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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor

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Acts as a drug target< (This gene does not contain this module)

Gene: KLF4

Summary for KLF4

Gene informationGene symbol

KLF4

Ensembl ID

ENSG00000136826

Entrez ID

9314

Gene nameKLF transcription factor 4
SynonymsEZF|GKLF
Gene typeprotein_coding
UniProtAcc

O43474


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Dataset with differentially expressed gene: KLF4

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE140440

DU145 and PC cell linesCell lineProstate cancerProstate cancerChemotherapydocetaxelNAMalignant cells1.346191.46e-03

GSE138267

CDXTumor tissueLung cancerSmall cell lung cancer (SCLC)ChemotherapyNANAMalignant cells0.4678820.00e+00

GSE169246_PacBlood

patientsPeripheral blood mononuclear cellsBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelpostMono/Macro-0.3715040.00e+00

GSE169246_PacBlood

patientsPeripheral blood mononuclear cellsBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelprecDCs0.3584819.07e-09

GSE169246_PacTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelpreMono/Macro0.6323382.35e-19

GSE197268_Axi-cel

patientsPeripheral blood mononuclear cellsAcute lymphoblastic leukemiaLarge B-cell acute lymphoblastic leukemia (B-ALL)Immunotherapyaxi-cel (CAR-T)postcDCs0.5402835.10e-07

GSE164551

patientsBone marrow aspirateMultiple myelomaRefractory multiple myeloma (MM)ImmunotherapyCAR-TNAMono/Macro-0.6787580.00e+00

GSE207422_Tor

patientsTumor tissueLung cancerEGFR/ALK mutation negative non-small cell lung cancer (NSCLC)Immunotherapytoripalimab + carboplatin + (docetaxel or pemetrexed or emcitabine)postMono/Macro0.851987.18e-21

GSE207422_Tor

patientsTumor tissueLung cancerEGFR/ALK mutation negative non-small cell lung cancer (NSCLC)Immunotherapytoripalimab + carboplatin + (docetaxel or pemetrexed or emcitabine)postMalignant cells0.6969266.25e-18

GSE139386

H3122 cell lineCell lineLung cancerEML4-ALK fusion-positive non-small cell lung cancer (NSCLC)Targeted therapyceritinibNAMalignant cells0.3806170.00e+00

GSE162117

patientsPeripheral blood mononuclear cellsAcute myeloid leukemiaTefractory acute myeloid leukemia (AML)Targeted therapyficlatuzumabpostcDCs-0.4624981.30e-35

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostMalignant cells-0.976730.00e+00

GSE131984_JQ1Pac

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + paclitaxelNAMalignant cells-0.279852.04e-07

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Expression of KLF4 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to KLF4

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.
Gene symbolMechanism

KLF4

Unusual Activation of Pro-survival Pathway
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MicroRNAs (miRNA) regulating KLF4

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
KLF4hsa-miR-7-5p98.6899NM_001314052
KLF4hsa-miR-656-3p98.645NM_001314052
KLF4hsa-miR-92b-3p98.6439NM_001314052
KLF4hsa-miR-32-5p98.6439NM_001314052
KLF4hsa-miR-92a-3p98.6439NM_001314052
KLF4hsa-miR-381-3p98.4283NM_001314052
KLF4hsa-miR-30098.4283NM_001314052
KLF4hsa-miR-25-3p98.3656NM_001314052
KLF4hsa-miR-363-3p98.3656NM_001314052
KLF4hsa-miR-367-3p98.3656NM_001314052
KLF4hsa-miR-430298.1707NM_001314052
KLF4hsa-miR-6505-5p97.457NM_001314052
KLF4hsa-miR-311996.059NM_001314052
KLF4hsa-miR-1229-3p95.5452NM_001314052
KLF4hsa-miR-6504-3p94.9749NM_001314052
KLF4hsa-miR-10399-5p94.9749NM_001314052
KLF4hsa-miR-135b-5p94.8471NM_001314052
KLF4hsa-miR-135a-5p94.8471NM_001314052
KLF4hsa-miR-370-5p94.0066NM_001314052
KLF4hsa-let-7b-3p93.8392NM_001314052
KLF4hsa-let-7f-1-3p93.8392NM_001314052
KLF4hsa-miR-98-3p93.8392NM_001314052
KLF4hsa-let-7a-3p93.8392NM_001314052
KLF4hsa-miR-59193.0654NM_001314052
KLF4hsa-miR-4680-3p92.6098NM_001314052
KLF4hsa-miR-126392.4817NM_001314052
KLF4hsa-miR-4666a-3p92.3494NM_001314052
KLF4hsa-miR-5582-3p92.1882NM_001314052
KLF4hsa-miR-5197-5p92.0242NM_001314052
KLF4hsa-miR-447191.9714NM_001314052
KLF4hsa-miR-103a-3p91.7984NM_001314052
KLF4hsa-miR-10791.7984NM_001314052
KLF4hsa-let-7c-3p91.7926NM_001314052
KLF4hsa-miR-524-5p91.6578NM_001314052
KLF4hsa-miR-520d-5p91.6578NM_001314052
KLF4hsa-miR-428891.1462NM_001314052
KLF4hsa-miR-4761-5p90.8146NM_001314052
KLF4hsa-miR-26b-3p90.7083NM_001314052
KLF4hsa-miR-450a-1-3p90.3755NM_001314052
KLF4hsa-miR-63289.9177NM_001314052
KLF4hsa-miR-5580-3p88.6634NM_001314052
KLF4hsa-miR-508-3p88.6173NM_001314052
KLF4hsa-miR-497-3p88.4734NM_001314052
KLF4hsa-miR-805988.3168NM_001314052
KLF4hsa-miR-153-5p88.071NM_001314052
KLF4hsa-miR-3140-5p87.9896NM_001314052
KLF4hsa-miR-431187.6395NM_001314052
KLF4hsa-miR-34687.632NM_001314052
KLF4hsa-miR-391087.5875NM_001314052
KLF4hsa-miR-449a86.377NM_001314052
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Motifs and transcription factors (TFs) regulating KLF4

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
KLF4transfac_pro__M02861GATA6 (inferredBy_Orthology).
KLF4metacluster_143.13ZBTB7A (directAnnotation).
KLF4hocomoco__XBP1_HUMAN.H11MO.0.DXBP1 (directAnnotation).
KLF4taipale_tf_pairs__ETV5_HES7_NNCACGTGNNNNCCGGAANN_CAPETV5; HES7 (directAnnotation).
KLF4transfac_public__M00189TFAP2A; TFAP2B; TFAP2C (directAnnotation).
KLF4kznf__ZNF548_Imbeault2017_OM_RCADEZNF548 (directAnnotation).
KLF4metacluster_196.3NR1H4; NR2F6; PRDM14; ZNF264; ZNF264 (directAnnotation). HNF4A; HNF4G; NR1D1; NR1D1; NR1D1; NR1D2; NR1D2; NR1D2; NR1H2; NR1H2; NR1H2; NR1H3; NR1H3; NR1H3; NR1I2; NR1I2; NR1I2; NR2C1; NR2C2; NR2F2; NR2F6; PPARA; PPARA; PPARA; PPARD; PPARD; PPARD; PPARG; PPARG; PPARG; RARA; RARA; RARA; RARB; RARB; RARB; RORA; RORA; RORA; RORB; RORB; RORB; RORC; RORC; RORC; RXRA; RXRB; RXRG; THRA; THRA; THRA; VDR; VDR; VDR (inferredBy_Orthology).
KLF4kznf__ZNF2_Imbeault2017_OM_RCADEZNF2 (directAnnotation).
KLF4taipale_tf_pairs__TFAP2C_HES7_NNCRCGYGNNNNNNSCCNNNGGS_CAP_reprHES7; TFAP2C (directAnnotation).
KLF4transfac_pro__M07329SP7 (directAnnotation).
KLF4metacluster_126.4ZNF12; ZNF12; ZNF44; ZNF563; ZNF93 (directAnnotation).
KLF4taipale_tf_pairs__ERF_FOXI1_RSCGGATGTTKWN_CAP_reprERF; FOXI1 (directAnnotation).
KLF4taipale_tf_pairs__TEAD4_ETV1_RSCGGAAATRCM_CAPETV1; TEAD4 (directAnnotation).
KLF4hdpi__TP73TP73 (directAnnotation).
KLF4taipale_tf_pairs__E2F1_ELK1_SGCGCNNNNNCGGAAGN_CAP_reprE2F1; ELK1 (directAnnotation).
KLF4metacluster_167.7IRF8 (inferredBy_Orthology).
KLF4metacluster_157.2ATF3; ATF3; ATF3; BACH1; BACH1; BACH1; BACH2; BACH2; BACH2; BACH2; BATF; BATF; BCL11A; FOS; FOS; FOS; FOS; FOS; FOS; FOSB; FOSL1; FOSL1; FOSL1; FOSL1; FOSL1; FOSL1; FOSL2; FOSL2; FOSL2; JDP2; JDP2; JDP2; JDP2; JDP2; JDP2; JDP2; JUN; JUN; JUN; JUN; JUN; JUNB; JUNB; JUNB; JUNB; JUNB; JUNB; JUND; JUND; JUND; JUND; JUND; JUND; JUND; JUND; JUND; MAF; MAFB; MAFF; MAFG; MAFK; NFE2; NFE2; NFE2; NFE2; NFE2; NFE2; NFE2L1; NFE2L1; NFE2L2; NFE2L3; ZNF3; ZSCAN5C (directAnnotation). FOSL1; JUN; JUN; JUN; JUNB; JUNB; JUND (inferredBy_Orthology).
KLF4transfac_pro__M05706ZNF20 (directAnnotation).
KLF4taipale_tf_pairs__GCM1_MAX_CACGTGNNNGCGGGY_CAPGCM1; MAX (directAnnotation).
KLF4taipale_tf_pairs__GCM1_MAX_NNCACGTGNNNGCGGGYN_CAP_reprGCM1; MAX (directAnnotation).
KLF4transfac_pro__M06573ZNF419 (directAnnotation).
KLF4hdpi__ZNF695ZNF695 (directAnnotation).
KLF4metacluster_103.2ZNF136; ZNF680 (directAnnotation).
KLF4metacluster_21.4HSF1; HSF1; HSF2 (directAnnotation). HSF1; HSF2; HSF4; HSF5; HSFX1; HSFX2; HSFX3; HSFX4; HSFY1; HSFY2 (inferredBy_Orthology).
KLF4transfac_pro__M06410ZNF497 (directAnnotation).
KLF4metacluster_134.1ZFP69 (directAnnotation).
KLF4hdpi__GTF3C2GTF3C2 (directAnnotation).
KLF4transfac_pro__M03806ZBTB7C (directAnnotation).
KLF4hdpi__NRLNRL (directAnnotation).
KLF4metacluster_126.7CTCF; ZFY; ZSCAN30 (directAnnotation).
KLF4jaspar__MA0185.1DEAF1 (inferredBy_Orthology).
KLF4transfac_pro__M05418ZNF521 (directAnnotation).
KLF4kznf__ZNF584_Imbeault2017_OM_RCADEZNF584 (directAnnotation).
KLF4metacluster_21.5HOXB2; HSF1; HSF1; HSF1; HSF1; HSF1; HSF1; HSF1; HSF1; HSF2; HSF2; HSF2; HSF2; HSF2; HSF2; HSF4; HSF4; HSF4 (directAnnotation). HSF1; HSF1; HSF1; HSF1; HSF1; HSF1; HSF1; HSF2; HSF2; HSF2; HSF2; HSF4; HSF4; HSF4; HSF4; HSF5; HSF5; HSF5; HSF5; HSFX1; HSFX1; HSFX1; HSFX1; HSFX2; HSFX2; HSFX2; HSFX2; HSFX3; HSFX3; HSFX3; HSFX3; HSFX4; HSFX4; HSFX4; HSFX4; HSFY1; HSFY1; HSFY1; HSFY1; HSFY2; HSFY2; HSFY2; HSFY2 (inferredBy_Orthology).
KLF4metacluster_22.29NFE2 (directAnnotation).
KLF4cisbp__M00341PAX6 (directAnnotation).
KLF4jaspar__MA1650.1ZBTB14 (directAnnotation).
KLF4taipale_tf_pairs__ERF_SREBF2_NNCACGTGACMGGAARNN_CAP_reprERF; SREBF2 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.
TFmotifExpressionCell typeDatasetTimepoint
KLF4transfac_pro__M07461upMalignant cells

GSE138267

NA
KLF4metacluster_195.2upMalignant cells

GSE140440

NA
KLF4transfac_pro__M07461upMalignant cells

GSE140440

NA
KLF4tfdimers__MD00391downMono/Macro

GSE164551

NA
KLF4metacluster_3.10downMono/Macro

GSE164551

NA
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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."