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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: HMGXB4

Summary for HMGXB4

Gene informationGene symbol

HMGXB4

Ensembl ID

ENSG00000100281

Entrez ID

10042

Gene nameHMG-box containing 4
SynonymsHMG2L1|P53N|THC211630
Gene typeprotein_coding
UniProtAcc

NA


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Dataset with differentially expressed gene: HMGXB4

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE186960

Panc1 cell lineCell linePancreatic cancerPancreatic ductal adenocarcinoma (PDAC)ChemotherapygemcitabineNAMalignant cells0.3299841.84e-19

GSE138267

CDXTumor tissueLung cancerSmall cell lung cancer (SCLC)ChemotherapyNANAMalignant cells0.3261860.00e+00

GSE189460

patientsBone marrow aspirateMultiple myelomaMultiple myeloma (MM)Targeted therapybortezomib + melphalan + prednisolonepreMalignant cells0.2902140.00e+00

GSE139386

H3122 cell lineCell lineLung cancerEML4-ALK fusion-positive non-small cell lung cancer (NSCLC)Targeted therapyceritinibNAMalignant cells-0.5700740.00e+00

GSE168668

LNCaP cell lineCell lineProstate cancerProstate cancerTargeted therapyenzalutamideNAMalignant cells-0.3133450.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostCD4+ T cells-0.3838080.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostMalignant cells-0.3908580.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostErythrocytes-0.2764150.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostNK cells-0.3379090.00e+00

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells-0.2980472.10e-23

GSE115251

Kelly cell lineCell lineNeuroblastomaNeuroblastomaTargeted therapyTAE684NAMalignant cells-0.3109380.00e+00

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Expression of HMGXB4 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to HMGXB4

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating HMGXB4

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
HMGXB4hsa-miR-190a-3p99.9805NM_001003681
HMGXB4hsa-miR-5011-5p99.9644NM_001003681
HMGXB4hsa-miR-392499.7028NM_001003681
HMGXB4hsa-miR-3059-5p99.5658NM_001003681
HMGXB4hsa-let-7a-3p99.5258NM_001003681
HMGXB4hsa-let-7f-1-3p99.5258NM_001003681
HMGXB4hsa-miR-98-3p99.5258NM_001003681
HMGXB4hsa-let-7b-3p99.5258NM_001003681
HMGXB4hsa-miR-1185-2-3p99.2744NM_001003681
HMGXB4hsa-miR-1185-1-3p99.2744NM_001003681
HMGXB4hsa-miR-4789-5p99.2106NM_001003681
HMGXB4hsa-let-7f-2-3p99.1941NM_001003681
HMGXB4hsa-miR-6715a-3p98.0322NM_001003681
HMGXB4hsa-miR-316397.1506NM_001003681
HMGXB4hsa-miR-3191-5p95.7651NM_001003681
HMGXB4hsa-miR-63495.5111NM_001003681
HMGXB4hsa-miR-371495.3192NM_001003681
HMGXB4hsa-miR-447695.1746NM_001003681
HMGXB4hsa-miR-4789-3p93.715NM_001003681
HMGXB4hsa-miR-6780a-3p93.2344NM_001003681
HMGXB4hsa-miR-7111-3p93.2344NM_001003681
HMGXB4hsa-miR-6881-3p92.6372NM_001003681
HMGXB4hsa-miR-548x-3p91.9905NM_001003681
HMGXB4hsa-miR-548aj-3p91.9905NM_001003681
HMGXB4hsa-miR-3177-5p91.5257NM_001003681
HMGXB4hsa-miR-624-5p91.0364NM_001003681
HMGXB4hsa-miR-428290.6823NM_001003681
HMGXB4hsa-miR-518c-5p90.3476NM_001003681
HMGXB4hsa-miR-6876-5p89.9606NM_001003681
HMGXB4hsa-miR-597-3p89.753NM_001003681
HMGXB4hsa-miR-548aq-3p88.8446NM_001003681
HMGXB4hsa-miR-548am-3p88.8446NM_001003681
HMGXB4hsa-miR-548j-3p88.8446NM_001003681
HMGXB4hsa-miR-548ah-3p88.8446NM_001003681
HMGXB4hsa-miR-548ae-3p88.8446NM_001003681
HMGXB4hsa-miR-950087.712NM_001003681
HMGXB4hsa-miR-10524-5p87.5272NM_001003681
HMGXB4hsa-let-7c-3p87.2106NM_001003681
HMGXB4hsa-miR-495-3p86.9325NM_001003681
HMGXB4hsa-miR-568886.9325NM_001003681
HMGXB4hsa-miR-29786.6428NM_001003681
HMGXB4hsa-miR-381-3p86.3324NM_001003681
HMGXB4hsa-miR-30086.3324NM_001003681
HMGXB4hsa-miR-670-3p85.6056NM_001003681
HMGXB4hsa-miR-7856-5p85.3054NM_001003681
HMGXB4hsa-miR-548e-5p85.1331NM_001003681
HMGXB4hsa-miR-4666a-3p84.9747NM_001003681
HMGXB4hsa-miR-453384.8751NM_001003681
HMGXB4hsa-miR-6511a-5p84.1255NM_001003681
HMGXB4hsa-miR-1910-3p84.1255NM_001003681
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Motifs and transcription factors (TFs) regulating HMGXB4

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
HMGXB4dbtfbs__GMEB1_K562_ENCSR928KOR_merged_N1GMEB1 (directAnnotation).
HMGXB4metacluster_182.10ZFX (directAnnotation).
HMGXB4swissregulon__mm__E2f7E2F7 (inferredBy_Orthology).
HMGXB4transfac_public__M00024E2F1 (directAnnotation).
HMGXB4transfac_pro__M07483CXXC1 (directAnnotation).
HMGXB4kznf__ZNF100_Imbeault2017_RP_RCADEZNF100 (directAnnotation).
HMGXB4kznf__ZNF548_Imbeault2017_RP_RCADEZNF548 (directAnnotation).
HMGXB4dbtfbs__ZBTB8A_HEK293_ENCSR481FEC_merged_N1ZBTB8A (directAnnotation).
HMGXB4dbtfbs__ZSCAN30_HEK293_ENCSR768VNZ_merged_N1ZSCAN30 (directAnnotation).
HMGXB4taipale_tf_pairs__ETV5_HES7_CCGGAANNNNNNCACGTG_CAPETV5; HES7 (directAnnotation).
HMGXB4transfac_pro__M01253CNOT3 (directAnnotation).
HMGXB4metacluster_144.5ZNF610; ZNF610; ZNF610 (directAnnotation).
HMGXB4taipale_tf_pairs__TFAP2C_E2F8_NNTCCCGCNNNCCNNNGGC_CAP_reprE2F8; TFAP2C (directAnnotation).
HMGXB4kznf__ZNF783_Imbeault2017_OM_MEMEZNF783 (directAnnotation).
HMGXB4kznf__ZNF383_Imbeault2017_OM_RCADEZNF383 (directAnnotation).
HMGXB4kznf__ZNF90_Imbeault2017_OM_RCADEZNF90 (directAnnotation).
HMGXB4kznf__ZNF311_Imbeault2017_OM_MEMEZNF311 (directAnnotation).
HMGXB4jaspar__MA0535.1SMAD9 (inferredBy_Orthology).
HMGXB4transfac_pro__M04817ZBTB33 (directAnnotation).
HMGXB4transfac_pro__M12697ZNF142 (directAnnotation).
HMGXB4tfdimers__MD00364WT1 (directAnnotation).
HMGXB4metacluster_23.9GLIS1; GLIS3; GLIS3; ZNF575 (directAnnotation). GLIS2; GLIS2; GLIS3; ZNF575; ZXDA; ZXDA; ZXDA; ZXDA; ZXDB; ZXDB; ZXDB; ZXDB; ZXDC; ZXDC; ZXDC; ZXDC (inferredBy_Orthology).
HMGXB4transfac_pro__M02786PLAGL1 (inferredBy_Orthology).
HMGXB4transfac_pro__M01973PLAG1 (directAnnotation).
HMGXB4metacluster_67.2ZNF501 (directAnnotation). ACAA1; E2F2; E2F2; E2F3; E2F3; FOXN4 (inferredBy_Orthology).
HMGXB4tfdimers__MD00483ZBTB14 (directAnnotation).
HMGXB4transfac_pro__M00803E2F1; E2F3; E2F4; TFDP1 (directAnnotation).
HMGXB4transfac_pro__M02861GATA6 (inferredBy_Orthology).
HMGXB4metacluster_143.13ZBTB7A (directAnnotation).
HMGXB4tfdimers__MD00552USF2; ZBTB14 (directAnnotation).
HMGXB4hocomoco__XBP1_HUMAN.H11MO.0.DXBP1 (directAnnotation).
HMGXB4transfac_pro__M07387ZBTB7A (directAnnotation).
HMGXB4taipale_tf_pairs__ETV5_HES7_NNCACGTGNNNNCCGGAANN_CAPETV5; HES7 (directAnnotation).
HMGXB4kznf__ZNF383_Imbeault2017_RP_RCADEZNF383 (directAnnotation).
HMGXB4metacluster_144.13HIC1; HIC1 (directAnnotation).
HMGXB4kznf__ZNF548_Imbeault2017_OM_RCADEZNF548 (directAnnotation).
HMGXB4hocomoco__ZFP57_MOUSE.H11MO.0.BZFP57 (inferredBy_Orthology).
HMGXB4kznf__ZNF2_Imbeault2017_OM_RCADEZNF2 (directAnnotation).
HMGXB4taipale_tf_pairs__TFAP2C_HES7_NNCRCGYGNNNNNNSCCNNNGGS_CAP_reprHES7; TFAP2C (directAnnotation).
HMGXB4transfac_pro__M07329SP7 (directAnnotation).
HMGXB4taipale_tf_pairs__ETV5_TCF3_RNCGGAAGNNNNNCASSTGN_CAP_reprETV5; TCF3 (directAnnotation).
HMGXB4taipale_cyt_meth__E2F2_NCGCGCGCGCM_eDBD_methE2F2 (directAnnotation).
HMGXB4metacluster_126.4ZNF12; ZNF12; ZNF44; ZNF563; ZNF93 (directAnnotation).
HMGXB4hdpi__ELF2ELF2 (directAnnotation).
HMGXB4taipale_tf_pairs__E2F3_HES7_NNNNGCGCSNNNNNCACGTGNN_CAPE2F3; HES7 (directAnnotation).
HMGXB4metacluster_170.2KLF1; KLF10; KLF10; KLF11; KLF11; KLF11; KLF12; KLF12; KLF14; KLF15; KLF17; KLF2; KLF5; KLF7; KLF7; KLF8; MAZ; MAZ; PATZ1; SP1; SP1; SP1; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP4; SP4; SP5; SP6; SP7; SP8; SP9; ZNF281 (directAnnotation). E2F1; E2F4; KLF10; KLF13; KLF14; KLF17; KLF2; KLF7; SP1; SP1; SP3; SP4; SP5; SP6; SP7 (inferredBy_Orthology).
HMGXB4hdpi__NRLNRL (directAnnotation).
HMGXB4metacluster_197.3E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F2; E2F2; E2F2; E2F2; E2F2; E2F3; E2F3; E2F3; E2F3; E2F3; E2F3; E2F3; E2F4; E2F4; E2F4; E2F4; E2F4; E2F4; E2F4; E2F4; E2F4; E2F4; E2F5; E2F5; E2F5; E2F5; E2F6; E2F7; E2F7; E2F7; RB1; TFDP1; TFDP1; TFDP1; TFDP1; TFDP1; TFDP1; TFDP1; TFDP2; TFDP2 (directAnnotation).
HMGXB4transfac_pro__M01837KLF11 (directAnnotation).
HMGXB4metacluster_195.2EGR2; KLF10; KLF10; KLF11; KLF11; KLF11; KLF13; KLF13; KLF13; KLF13; KLF13; KLF14; KLF14; KLF14; KLF14; KLF14; KLF15; KLF15; KLF16; KLF3; KLF8; KLF9; KLF9; KLF9; SP1; SP1; SP1; SP3; SP3; SP4; SP8; SP8; SP8; SP9; SP9 (directAnnotation). EGR1; KLF1; KLF12; KLF13; KLF14; KLF14; KLF14; KLF14; KLF14; KLF14; KLF16; KLF17; KLF17; KLF17; KLF17; KLF18; KLF18; KLF18; KLF18; KLF18; KLF18; KLF2; KLF2; KLF2; KLF3; KLF4; KLF5; KLF5; KLF5; KLF6; KLF7; KLF7; KLF8; KLF9; SP1; SP3; SP4; SP4; SP5; SP5; SP5; SP6; SP7; SP8; SP9 (inferredBy_Orthology).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."