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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor

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Acts as a drug target

Gene: HIF1A

Summary for HIF1A

Gene informationGene symbol

HIF1A

Ensembl ID

ENSG00000100644

Entrez ID

3091

Gene namehypoxia inducible factor 1 subunit alpha
SynonymsbHLHe78|HIF-1alpha|HIF1|MOP1|PASD8
Gene typeprotein_coding
UniProtAcc

Q16665


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Dataset with differentially expressed gene: HIF1A

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE186960

Panc1 cell lineCell linePancreatic cancerPancreatic ductal adenocarcinoma (PDAC)ChemotherapygemcitabineNAMalignant cells0.324951.92e-22

GSE138267

CDXTumor tissueLung cancerSmall cell lung cancer (SCLC)ChemotherapyNANAMalignant cells0.3079140.00e+00

GSE153697

patientsBone marrow aspirateAcute lymphoblastic leukemiaRelapsed B-cell acute lymphoblastic leukemia (B-ALL)Immunotherapyanti-CD19 CAR-TNAMalignant cells-0.3527.45e-11

GSE169246_PacAteTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)Immunotherapyatezolizumab + paclitaxelpreMono/Macro0.2721112.32e-10

GSE207422_Sin

patientsTumor tissueLung cancerEGFR/ALK mutation negative non-small cell lung cancer (NSCLC)Immunotherapysintilimab + carboplatin + (docetaxel or pemetrexed or emcitabine)postB cells0.3955061.14e-04

GSE207422_Sin

patientsTumor tissueLung cancerEGFR/ALK mutation negative non-small cell lung cancer (NSCLC)Immunotherapysintilimab + carboplatin + (docetaxel or pemetrexed or emcitabine)postNeutrophils0.3023054.46e-03

GSE207422_Sin

patientsTumor tissueLung cancerEGFR/ALK mutation negative non-small cell lung cancer (NSCLC)Immunotherapysintilimab + carboplatin + (docetaxel or pemetrexed or emcitabine)postCD8+ T cells0.2971166.10e-11

GSE207422_Sin

patientsTumor tissueLung cancerEGFR/ALK mutation negative non-small cell lung cancer (NSCLC)Immunotherapysintilimab + carboplatin + (docetaxel or pemetrexed or emcitabine)postMono/Macro1.23641.16e-27

GSE197268_Tisa-cel

patientsPeripheral blood mononuclear cellsAcute lymphoblastic leukemiaLarge B-cell acute lymphoblastic leukemia (B-ALL)Immunotherapytisa-cel (CAR-T)postMono/Macro-0.2655220.00e+00

GSE207422_Tor

patientsTumor tissueLung cancerEGFR/ALK mutation negative non-small cell lung cancer (NSCLC)Immunotherapytoripalimab + carboplatin + (docetaxel or pemetrexed or emcitabine)postMono/Macro0.640254.70e-13

GSE189460

patientsBone marrow aspirateMultiple myelomaMultiple myeloma (MM)Targeted therapybortezomib + melphalan + prednisolonepreMono/Macro-0.454670.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostMalignant cells-2.177310.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostNK cells-0.6187380.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostCD4+ T cells-0.5062390.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostCD8+ T cells-0.4393260.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpreMalignant cells-0.3355750.00e+00

GSE131984_Pal

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapypalbociclibNAMalignant cells0.5173832.73e-29

GSE108397

451Lu cell lineCell lineMelanomaMelanomaTargeted therapyPLX-4720NAMalignant cells-0.3218130.00e+00

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells-0.8997270.00e+00

GSE115251

Kelly cell lineCell lineNeuroblastomaNeuroblastomaTargeted therapyTAE684NAMalignant cells-0.2813490.00e+00

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Expression of HIF1A in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to HIF1A

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.
Gene symbolMechanism

HIF1A

Unusual Activation of Pro-survival Pathway
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MicroRNAs (miRNA) regulating HIF1A

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
HIF1Ahsa-miR-449599.5823NM_001243084
HIF1Ahsa-miR-365899.2498NM_181054
HIF1Ahsa-miR-3692-5p98.7248NM_181054
HIF1Ahsa-miR-127697.8279NM_001243084
HIF1Ahsa-miR-805597.3694NM_001243084
HIF1Ahsa-miR-548x-3p97.3429NM_181054
HIF1Ahsa-miR-548aj-3p97.3429NM_181054
HIF1Ahsa-miR-5692a96.8935NM_001243084
HIF1Ahsa-miR-548am-3p96.3201NM_181054
HIF1Ahsa-miR-548j-3p96.3201NM_181054
HIF1Ahsa-miR-548ae-3p96.3201NM_181054
HIF1Ahsa-miR-548aq-3p96.3201NM_181054
HIF1Ahsa-miR-548ah-3p96.3201NM_181054
HIF1Ahsa-miR-4778-3p96.2654NM_181054
HIF1Ahsa-miR-9851-5p96.0382NM_181054
HIF1Ahsa-miR-4735-3p95.6809NM_181054
HIF1Ahsa-miR-18a-5p95.6809NM_181054
HIF1Ahsa-miR-18b-5p95.6809NM_181054
HIF1Ahsa-miR-6815-3p93.745NM_001243084
HIF1Ahsa-miR-589-3p93.7193NM_181054
HIF1Ahsa-miR-493-5p93.5356NM_181054
HIF1Ahsa-miR-3613-3p93.5296NM_181054
HIF1Ahsa-miR-376c-3p93.4324NM_001243084
HIF1Ahsa-miR-570493.2874NM_001243084
HIF1Ahsa-miR-767-3p93.1879NM_181054
HIF1Ahsa-miR-580-3p93.0744NM_181054
HIF1Ahsa-miR-4639-5p93.0132NM_181054
HIF1Ahsa-miR-143-5p92.9863NM_001243084
HIF1Ahsa-miR-520h91.7977NM_181054
HIF1Ahsa-miR-520g-3p91.7977NM_181054
HIF1Ahsa-miR-549a-3p91.7424NM_001243084
HIF1Ahsa-miR-146a-3p91.2871NM_181054
HIF1Ahsa-miR-5591-3p91.1112NM_001243084
HIF1Ahsa-miR-431090.9272NM_181054
HIF1Ahsa-miR-313390.4865NM_001243084
HIF1Ahsa-miR-133a-5p89.9545NM_181054
HIF1Ahsa-miR-431289.8593NM_181054
HIF1Ahsa-miR-4659b-3p89.7875NM_001243084
HIF1Ahsa-miR-4659a-3p89.7875NM_001243084
HIF1Ahsa-miR-806688.9021NM_001243084
HIF1Ahsa-miR-428288.5308NM_001243084
HIF1Ahsa-miR-519c-3p88.4024NM_181054
HIF1Ahsa-miR-519b-3p88.4024NM_181054
HIF1Ahsa-miR-519a-3p88.4024NM_181054
HIF1Ahsa-miR-7152-3p88.2798NM_181054
HIF1Ahsa-miR-6828-3p88.1306NM_181054
HIF1Ahsa-miR-889-3p87.9236NM_001243084
HIF1Ahsa-miR-312887.7262NM_181054
HIF1Ahsa-miR-526b-3p87.4303NM_181054
HIF1Ahsa-miR-106a-5p87.4303NM_181054
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Motifs and transcription factors (TFs) regulating HIF1A

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
HIF1Ametacluster_23.9GLIS1; GLIS3; GLIS3; ZNF575 (directAnnotation). GLIS2; GLIS2; GLIS3; ZNF575; ZXDA; ZXDA; ZXDA; ZXDA; ZXDB; ZXDB; ZXDB; ZXDB; ZXDC; ZXDC; ZXDC; ZXDC (inferredBy_Orthology).
HIF1Ametacluster_67.2ZNF501 (directAnnotation). ACAA1; E2F2; E2F2; E2F3; E2F3; FOXN4 (inferredBy_Orthology).
HIF1Atfdimers__MD00483ZBTB14 (directAnnotation).
HIF1Ahocomoco__XBP1_HUMAN.H11MO.0.DXBP1 (directAnnotation).
HIF1Atransfac_pro__M07387ZBTB7A (directAnnotation).
HIF1Ataipale_tf_pairs__ETV5_HES7_NNCACGTGNNNNCCGGAANN_CAPETV5; HES7 (directAnnotation).
HIF1Ametacluster_144.13HIC1; HIC1 (directAnnotation).
HIF1Ametacluster_196.3NR1H4; NR2F6; PRDM14; ZNF264; ZNF264 (directAnnotation). HNF4A; HNF4G; NR1D1; NR1D1; NR1D1; NR1D2; NR1D2; NR1D2; NR1H2; NR1H2; NR1H2; NR1H3; NR1H3; NR1H3; NR1I2; NR1I2; NR1I2; NR2C1; NR2C2; NR2F2; NR2F6; PPARA; PPARA; PPARA; PPARD; PPARD; PPARD; PPARG; PPARG; PPARG; RARA; RARA; RARA; RARB; RARB; RARB; RORA; RORA; RORA; RORB; RORB; RORB; RORC; RORC; RORC; RXRA; RXRB; RXRG; THRA; THRA; THRA; VDR; VDR; VDR (inferredBy_Orthology).
HIF1Ahocomoco__ZFP57_MOUSE.H11MO.0.BZFP57 (inferredBy_Orthology).
HIF1Akznf__ZNF2_Imbeault2017_OM_RCADEZNF2 (directAnnotation).
HIF1Ataipale_tf_pairs__TFAP2C_HES7_NNCRCGYGNNNNNNSCCNNNGGS_CAP_reprHES7; TFAP2C (directAnnotation).
HIF1Ataipale_cyt_meth__E2F2_NCGCGCGCGCM_eDBD_methE2F2 (directAnnotation).
HIF1Ametacluster_126.4ZNF12; ZNF12; ZNF44; ZNF563; ZNF93 (directAnnotation).
HIF1Atransfac_pro__M01122ZNF219 (directAnnotation).
HIF1Aswissregulon__hs__GLIS2GLIS2 (directAnnotation).
HIF1Ametacluster_195.2EGR2; KLF10; KLF10; KLF11; KLF11; KLF11; KLF13; KLF13; KLF13; KLF13; KLF13; KLF14; KLF14; KLF14; KLF14; KLF14; KLF15; KLF15; KLF16; KLF3; KLF8; KLF9; KLF9; KLF9; SP1; SP1; SP1; SP3; SP3; SP4; SP8; SP8; SP8; SP9; SP9 (directAnnotation). EGR1; KLF1; KLF12; KLF13; KLF14; KLF14; KLF14; KLF14; KLF14; KLF14; KLF16; KLF17; KLF17; KLF17; KLF17; KLF18; KLF18; KLF18; KLF18; KLF18; KLF18; KLF2; KLF2; KLF2; KLF3; KLF4; KLF5; KLF5; KLF5; KLF6; KLF7; KLF7; KLF8; KLF9; SP1; SP3; SP4; SP4; SP5; SP5; SP5; SP6; SP7; SP8; SP9 (inferredBy_Orthology).
HIF1Atfdimers__MD00391KLF4 (directAnnotation).
HIF1Atfdimers__MD00441OVOL2; RELA (directAnnotation).
HIF1Ataipale_tf_pairs__E2F1_ELK1_SGCGCNNNNNNNNNNNCGGAAGN_CAP_reprE2F1; ELK1 (directAnnotation).
HIF1Ametacluster_24.5ZNF675; ZNF675 (directAnnotation).
HIF1Atransfac_pro__M05898ZSCAN4 (directAnnotation).
HIF1Atransfac_pro__M04948HNF4G (directAnnotation).
HIF1Ahocomoco__NKX61_HUMAN.H11MO.1.BNKX6-1 (directAnnotation).
HIF1Atransfac_pro__M05844ZNF628 (inferredBy_Orthology).
HIF1Atfdimers__MD00192CHURC1 (directAnnotation).
HIF1Ametacluster_141.2E2F2; E2F3 (directAnnotation).
HIF1Ataipale_cyt_meth__ELF3_NTGTGCGGATGCN_FL_reprELF3 (directAnnotation).
HIF1Atransfac_pro__M05473SALL4 (directAnnotation).
HIF1Atransfac_pro__M05722ZNF8 (directAnnotation).
HIF1Ataipale_tf_pairs__POU2F1_EOMES_ARGTGTNNNAATATKYNNNCRCNN_CAP_reprEOMES; POU2F1 (directAnnotation).
HIF1Ametacluster_58.12BATF; FOSL1; FOSL1 (directAnnotation).
HIF1Atransfac_pro__M07448ZBED1 (directAnnotation).
HIF1Ametacluster_172.6CHD2; E2F1 (directAnnotation).
HIF1Aswissregulon__hs__SOX9SOX9 (directAnnotation).
HIF1Ahdpi__RAB18RAB18 (directAnnotation).
HIF1Atfdimers__MD00007E2F1; IRF8 (directAnnotation).
HIF1Atransfac_pro__M06383ZNF629 (inferredBy_Orthology).
HIF1Ataipale_tf_pairs__ERF_MAX_RSCGGAANCACGTGN_CAP_reprERF; MAX (directAnnotation).
HIF1Ahdpi__TFAMTFAM (directAnnotation).
HIF1Ametacluster_62.3HSF5 (directAnnotation).
HIF1Atransfac_pro__M06586ZNF479 (directAnnotation).
HIF1Ametacluster_87.4ZNF667 (directAnnotation).
HIF1Atransfac_pro__M06556ZNF383 (directAnnotation).
HIF1Ataipale_tf_pairs__GCM1_FOXI1_NNGTMAATANGGGYR_CAPFOXI1; GCM1 (directAnnotation).
HIF1Ametacluster_57.3ARNT; ATF3; ATF3; ATF3; ATF3; BHLHE40; BHLHE40; BHLHE40; BHLHE41; BHLHE41; BHLHE41; MITF; MITF; MITF; MLX; MLXIPL; SREBF1; SREBF1; SREBF1; SREBF1; SREBF2; SREBF2; SREBF2; TFE3; TFEC; USF1; USF1; USF1; USF1; USF1; USF1; USF1; USF1; USF1; USF2; USF2; USF2; USF2; USF2; USF2; USF2; USF2; USF2; USF2; USF2; USF2; USF2; ZNF507 (directAnnotation). ARNTL; BHLHE40; BHLHE40; BHLHE41; HELT; HES1; HES2; HES3; HES5; HES6; HES7; HEY1; HEY2; HEYL; MLX; MLX; SREBF1; SREBF2; TFE3; USF1; USF1; USF2; USF2 (inferredBy_Orthology).
HIF1Atransfac_pro__M05995ZNF180 (directAnnotation).
HIF1Atransfac_pro__M06647ZNF665 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.
TFmotifExpressionCell typeDatasetTimepoint
HIF1Ajaspar__MA1106.1downMalignant cells

GSE115251

NA
HIF1Ajaspar__MA1106.1upMono/Macro

GSE207422_Sin

post
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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.
Target nameDrug nameDrug IDDrug type
HIF1A"2-Methoxyestradiol"

DB02342

small molecule
HIF1A"Carvedilol"

DB01136

small molecule
HIF1A"ENMD-1198"

DB05959

small molecule
HIF1A"FG-2216"

DB08687

small molecule
HIF1A"Hydralazine"

DB01275

small molecule
HIF1A"PX-478"

DB06082

small molecule
HIF1A"Vadadustat"

DB12255

small molecule
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1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."