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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target

Gene: VDAC1

Summary for VDAC1

Gene informationGene symbol

VDAC1

Ensembl ID

ENSG00000213585

Entrez ID

7416

Gene namevoltage dependent anion channel 1
SynonymsMGC111064|PORIN
Gene typeprotein_coding
UniProtAcc

P21796


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Dataset with differentially expressed gene: VDAC1

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE186960

Panc1 cell lineCell linePancreatic cancerPancreatic ductal adenocarcinoma (PDAC)ChemotherapygemcitabineNAMalignant cells-0.3566522.44e-30

GSE169246_PacBlood

patientsPeripheral blood mononuclear cellsBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelpostcDCs0.2594171.91e-04

GSE153697

patientsBone marrow aspirateAcute lymphoblastic leukemiaRelapsed B-cell acute lymphoblastic leukemia (B-ALL)Immunotherapyanti-CD19 CAR-TNAMalignant cells0.4535471.42e-32

GSE207422_Tor

patientsTumor tissueLung cancerEGFR/ALK mutation negative non-small cell lung cancer (NSCLC)Immunotherapytoripalimab + carboplatin + (docetaxel or pemetrexed or emcitabine)postMalignant cells-0.4775161.64e-26

GSE158457

PDX cellsCell lineAcute lymphoblastic leukemiaT-cell acute lymphoblastic leukemia (ALL)Targeted therapydasatinibNAMalignant cells-0.2709590.00e+00

GSE168668

LNCaP cell lineCell lineProstate cancerProstate cancerTargeted therapyenzalutamideNAMalignant cells-0.2741510.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostMalignant cells0.4870530.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpreMalignant cells-0.2927560.00e+00

GSE131984_JQ1

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1NAMalignant cells-0.6602930.00e+00

GSE131984_JQ1Pac

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + paclitaxelNAMalignant cells-0.6632330.00e+00

GSE131984_JQ1Pal

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + palbociclibNAMalignant cells-1.00950.00e+00

GSE104987

MCF7 cell lineCell lineBreast cancerER+ breast cancerTargeted therapyKDM5-C70NAMalignant cells-0.2627672.67e-10

GSE131984_Pal

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapypalbociclibNAMalignant cells-0.3719021.34e-27

GSE108397

451Lu cell lineCell lineMelanomaMelanomaTargeted therapyPLX-4720NAMalignant cells-0.6995750.00e+00

GSE161801_IMiD

patientsBone marrow aspirateMultiple myelomaRefractory multiple myeloma (MM)Targeted therapypomalidomide + dexamethasone OR lenalidomide + dexamethasonepostMalignant cells-0.2792490.00e+00

GSE115251

Kelly cell lineCell lineNeuroblastomaNeuroblastomaTargeted therapyTAE684NAMalignant cells-0.5102640.00e+00

GSE164897_VemCob

A375 cell lineCell lineMelanomaBRAFV600E-mutant melanomaTargeted therapyvemurafenib + combimetinibNAMalignant cells-0.7772380.00e+00

GSE164897_VemTra

A375 cell lineCell lineMelanomaB+E2:E57RAFV600E-mutant melanomaTargeted therapyvemurafenib + trametinibNAMalignant cells-0.5809830.00e+00

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Expression of VDAC1 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to VDAC1

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating VDAC1

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
VDAC1hsa-miR-3529-3p96.461NM_003374
VDAC1hsa-miR-183-5p95.8114NM_003374
VDAC1hsa-miR-16-2-3p94.1157NM_003374
VDAC1hsa-miR-195-3p94.1157NM_003374
VDAC1hsa-miR-1468-3p92.6071NM_003374
VDAC1hsa-miR-548av-3p92.2113NM_003374
VDAC1hsa-miR-324-5p91.881NM_003374
VDAC1hsa-miR-5003-5p90.9113NM_003374
VDAC1hsa-miR-129789.9831NM_003374
VDAC1hsa-miR-6895-5p89.4081NM_003374
VDAC1hsa-miR-7161-5p89.2609NM_003374
VDAC1hsa-miR-431089.0344NM_003374
VDAC1hsa-miR-26a-5p88.5426NM_003374
VDAC1hsa-miR-26b-5p88.5426NM_003374
VDAC1hsa-miR-10399-5p88.0435NM_003374
VDAC1hsa-miR-6504-3p88.0435NM_003374
VDAC1hsa-miR-427288.0298NM_003374
VDAC1hsa-miR-6864-5p87.347NM_003374
VDAC1hsa-miR-6755-3p86.9356NM_003374
VDAC1hsa-miR-7-5p86.4372NM_003374
VDAC1hsa-miR-320b86.3741NM_003374
VDAC1hsa-miR-320a-3p86.3741NM_003374
VDAC1hsa-miR-320c86.3741NM_003374
VDAC1hsa-miR-320d86.3741NM_003374
VDAC1hsa-miR-442986.3741NM_003374
VDAC1hsa-miR-548u86.16NM_003374
VDAC1hsa-miR-5197-5p85.8887NM_003374
VDAC1hsa-miR-7157-5p84.9878NM_003374
VDAC1hsa-miR-3120-3p84.7928NM_003374
VDAC1hsa-miR-660-5p84.6266NM_003374
VDAC1hsa-miR-4758-5p83.9818NM_003374
VDAC1hsa-miR-1238-5p83.9818NM_003374
VDAC1hsa-miR-446583.885NM_003374
VDAC1hsa-miR-4777-5p83.8042NM_003374
VDAC1hsa-miR-7156-3p83.7485NM_003374
VDAC1hsa-miR-6838-3p82.8092NM_003374
VDAC1hsa-miR-9-3p81.3065NM_003374
VDAC1hsa-miR-57780.7613NM_003374
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Motifs and transcription factors (TFs) regulating VDAC1

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
VDAC1metacluster_3.11SP1; SP1; SP2; SP3; SP3; SP4 (directAnnotation).
VDAC1tfdimers__MD00151CHURC1 (directAnnotation).
VDAC1metacluster_126.3LIN28B; LIN28B (directAnnotation).
VDAC1cisbp__M00968MTF2 (directAnnotation).
VDAC1transfac_pro__M12697ZNF142 (directAnnotation).
VDAC1transfac_pro__M01303SP1 (directAnnotation).
VDAC1kznf__ZFP57_Imbeault2017_RP_ChIP-seqZFP57 (directAnnotation).
VDAC1metacluster_3.14WT1; WT1 (directAnnotation).
VDAC1metacluster_144.5ZNF610; ZNF610; ZNF610 (directAnnotation).
VDAC1taipale_tf_pairs__ERF_FOXI1_TGTTKMCGGAWRN_CAP_reprERF; FOXI1 (directAnnotation).
VDAC1transfac_pro__M06894ZFP90 (inferredBy_Orthology).
VDAC1transfac_pro__M01182HINFP (directAnnotation).
VDAC1taipale_cyt_meth__SMAD5_YGTCTAGACA_eDBD_meth_reprSMAD5 (directAnnotation).
VDAC1metacluster_172.6CHD2; E2F1 (directAnnotation).
VDAC1metacluster_91.2SMAD3; SMAD5 (directAnnotation).
VDAC1taipale_tf_pairs__FOXJ3_ELF1_NNARAAAACCGAAWMN_CAPELF1; FOXJ3 (directAnnotation).
VDAC1taipale_tf_pairs__GCM1_HOXB13_NCCCGCANNMATAAA_CAP_reprGCM1; HOXB13 (directAnnotation).
VDAC1taipale_tf_pairs__ETV2_FOXI1_RSCGGATGTTKW_CAPETV2; FOXI1 (directAnnotation).
VDAC1taipale_tf_pairs__GCM1_ELK1_RTGCGGGCGGAAGTN_CAP_2ELK1; GCM1 (directAnnotation).
VDAC1metacluster_161.4LHX9 (directAnnotation).
VDAC1taipale_tf_pairs__ETV2_TEF_RSCGGAWNTTRCGYAAN_CAPETV2; TEF (directAnnotation).
VDAC1metacluster_161.3LHX9 (directAnnotation).
VDAC1kznf__ZBTB14_Schmitges2016_RCADEZBTB14 (directAnnotation).
VDAC1transfac_pro__M02089E2F3 (directAnnotation).
VDAC1taipale_cyt_meth__E2F2_NCGCGCGCGCM_eDBD_methE2F2 (directAnnotation).
VDAC1transfac_pro__M00803E2F1; E2F3; E2F4; TFDP1 (directAnnotation).
VDAC1transfac_pro__M04817ZBTB33 (directAnnotation).
VDAC1tfdimers__MD00483ZBTB14 (directAnnotation).
VDAC1cisbp__M07938E2F1 (directAnnotation).
VDAC1metacluster_15.2E2F1; E2F1; E2F1; E2F1; E2F1; E2F3; E2F4; E2F4; E2F4; E2F6; E2F6; E2F6; E2F6; E2F6; E2F6; E2F6; E2F7; TFDP1; TFDP2; ZNF566; ZNF566; ZNF574 (directAnnotation). E2F3; E2F3; E2F4 (inferredBy_Orthology).
VDAC1taipale_tf_pairs__E2F1_HES7_RRCRCGYGYNNNNSGCGCSN_CAP_reprE2F1; HES7 (directAnnotation).
VDAC1taipale_tf_pairs__GCM2_ELK1_NNRNGGGCGGAARTN_CAPELK1; GCM2 (directAnnotation).
VDAC1hdpi__MYEF2MYEF2 (directAnnotation).
VDAC1metacluster_131.6EGR2; EGR4 (directAnnotation). EGR2; EGR3 (inferredBy_Orthology).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.
Target nameDrug nameDrug IDDrug type
VDAC1"Aluminium monostearate"

DB01375

small molecule
VDAC1"Cannabidiol"

DB09061

small molecule
VDAC1"Medical Cannabis"

DB14009

biotech
VDAC1"Nabiximols"

DB14011

small molecule
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1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."