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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: UBE2D3

Summary for UBE2D3

Gene informationGene symbol

UBE2D3

Ensembl ID

ENSG00000109332

Entrez ID

7323

Gene nameubiquitin conjugating enzyme E2 D3
SynonymsUbcH5C
Gene typeprotein_coding
UniProtAcc

P61077


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Dataset with differentially expressed gene: UBE2D3

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE186960

Panc1 cell lineCell linePancreatic cancerPancreatic ductal adenocarcinoma (PDAC)ChemotherapygemcitabineNAMalignant cells-0.354751.15e-20

GSE163836

FCIBC02 cell lineCell lineBreast cancerInflammatory breast cancerChemotherapypaclitaxelNAMalignant cells-0.2744264.62e-40

GSE169246_PacBlood

patientsPeripheral blood mononuclear cellsBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelpostCD8+ T cells0.3274490.00e+00

GSE153697

patientsBone marrow aspirateAcute lymphoblastic leukemiaRelapsed B-cell acute lymphoblastic leukemia (B-ALL)Immunotherapyanti-CD19 CAR-TNAMalignant cells-0.2565294.73e-09

GSE169246_PacAteTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)Immunotherapyatezolizumab + paclitaxelpostCD8+ T cells0.2522655.32e-44

PMID34715028

patientsTumor tissueKidney cancerClear cell renal cell carcinoma (ccRCC)ImmunotherapynivolumabpostCD4+ T cells-0.3953153.06e-42

PMID34715028

patientsTumor tissueKidney cancerClear cell renal cell carcinoma (ccRCC)ImmunotherapynivolumabpostCD8+ T cells-0.2922340.00e+00

GSE189460

patientsBone marrow aspirateMultiple myelomaMultiple myeloma (MM)Targeted therapybortezomib + melphalan + prednisolonepreMalignant cells0.281220.00e+00

GSE161801_PI

patientsBone marrow aspirateMultiple myelomaRefractory multiple myeloma (MM)Targeted therapycarfilzomib + dexamethasonepreMalignant cells0.3153881.33e-11

GSE139386

H3122 cell lineCell lineLung cancerEML4-ALK fusion-positive non-small cell lung cancer (NSCLC)Targeted therapyceritinibNAMalignant cells-0.4125150.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostNK cells-0.4038210.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostMalignant cells-0.6179680.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostCD4+ T cells-0.4581620.00e+00

GSE111014

patientsPeripheral blood mononuclear cellsChronic lymphocytic leukemiaChronic lymphocytic leukemia (CLL)Targeted therapyibrutinibpostNK cells0.3329137.72e-14

GSE131984_JQ1

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1NAMalignant cells-0.4030880.00e+00

GSE131984_JQ1Pac

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + paclitaxelNAMalignant cells-0.3825931.06e-28

GSE131984_JQ1Pal

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + palbociclibNAMalignant cells-0.6334060.00e+00

GSE131984_Pal

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapypalbociclibNAMalignant cells-0.427162.08e-36

GSE108397

451Lu cell lineCell lineMelanomaMelanomaTargeted therapyPLX-4720NAMalignant cells-0.4196190.00e+00

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells-1.493750.00e+00

GSE164897_VemCob

A375 cell lineCell lineMelanomaBRAFV600E-mutant melanomaTargeted therapyvemurafenib + combimetinibNAMalignant cells-0.5938460.00e+00

GSE164897_VemTra

A375 cell lineCell lineMelanomaB+E2:E57RAFV600E-mutant melanomaTargeted therapyvemurafenib + trametinibNAMalignant cells-0.5227380.00e+00

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Expression of UBE2D3 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to UBE2D3

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating UBE2D3

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
UBE2D3hsa-miR-3613-3p99.8697NM_181886
UBE2D3hsa-miR-551b-5p99.4973NM_181886
UBE2D3hsa-miR-152-3p99.4174NM_181892
UBE2D3hsa-miR-148a-3p99.4174NM_181892
UBE2D3hsa-miR-148b-3p99.4174NM_181892
UBE2D3hsa-miR-491-3p98.7751NM_181886
UBE2D3hsa-miR-442297.6637NM_181892
UBE2D3hsa-miR-364697.422NM_181886
UBE2D3hsa-miR-316396.7881NM_181892
UBE2D3hsa-miR-469896.4638NM_181892
UBE2D3hsa-miR-451995.6171NM_181892
UBE2D3hsa-miR-472995.5281NM_181886
UBE2D3hsa-miR-33a-3p95.2119NM_181892
UBE2D3hsa-miR-524-5p94.7353NM_181892
UBE2D3hsa-miR-520d-5p94.7353NM_181892
UBE2D3hsa-miR-549a-3p94.4564NM_181886
UBE2D3hsa-miR-4701-5p94.3537NM_181886
UBE2D3hsa-miR-58894.3537NM_181886
UBE2D3hsa-miR-942-3p94.11NM_181892
UBE2D3hsa-miR-426293.9378NM_181892
UBE2D3hsa-miR-181d-5p93.9378NM_181892
UBE2D3hsa-miR-432893.0238NM_181886
UBE2D3hsa-miR-513c-3p92.6497NM_181886
UBE2D3hsa-miR-513a-3p92.6497NM_181886
UBE2D3hsa-miR-568892.4991NM_181886
UBE2D3hsa-miR-21-5p92.3881NM_181892
UBE2D3hsa-miR-495-3p92.3707NM_181886
UBE2D3hsa-miR-125791.8998NM_181886
UBE2D3hsa-miR-203a-3p91.6589NM_181892
UBE2D3hsa-miR-1213691.6027NM_181892
UBE2D3hsa-miR-181a-5p91.5523NM_181892
UBE2D3hsa-miR-181c-5p91.5523NM_181892
UBE2D3hsa-miR-181b-5p91.5523NM_181892
UBE2D3hsa-miR-570191.4639NM_181892
UBE2D3hsa-miR-590-5p91.4023NM_181892
UBE2D3hsa-miR-3606-3p91.1913NM_181886
UBE2D3hsa-miR-367-5p90.9204NM_181886
UBE2D3hsa-miR-3944-5p90.064NM_181886
UBE2D3hsa-miR-126489.9933NM_181892
UBE2D3hsa-miR-1212389.9912NM_181892
UBE2D3hsa-miR-58689.7006NM_181886
UBE2D3hsa-miR-6765-3p89.6483NM_181892
UBE2D3hsa-miR-6882-5p89.5512NM_181892
UBE2D3hsa-miR-227889.5101NM_181886
UBE2D3hsa-miR-6505-5p89.4851NM_181892
UBE2D3hsa-miR-1245b-3p89.4642NM_181886
UBE2D3hsa-miR-7159-5p89.3555NM_181886
UBE2D3hsa-miR-889-5p89.3181NM_181892
UBE2D3hsa-miR-548az-5p88.8618NM_181892
UBE2D3hsa-miR-548t-5p88.8618NM_181892
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Motifs and transcription factors (TFs) regulating UBE2D3

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
UBE2D3taipale_tf_pairs__ETV5_EVX1_RSCGGWAATKR_CAPETV5; EVX1 (directAnnotation).
UBE2D3taipale_tf_pairs__HOXB2_ELK1_TAATKRCCGGAAGNN_CAP_reprELK1; HOXB2 (directAnnotation).
UBE2D3taipale_tf_pairs__ELK1_HOXA3_RSCGGTAATKR_CAP_reprELK1; HOXA3 (directAnnotation).
UBE2D3taipale_tf_pairs__GCM1_ETV4_RTGCGGGCGGAAGTR_CAPETV4; GCM1 (directAnnotation).
UBE2D3taipale_tf_pairs__ELK1_EOMES_RSCGGAANNAGGYGYNA_CAP_reprELK1; EOMES (directAnnotation).
UBE2D3transfac_pro__M06331ZNF343 (directAnnotation).
UBE2D3metacluster_135.11NR2C2 (directAnnotation).
UBE2D3metacluster_151.1KAT7; PML; SMAD5; TAF1; ZFP37; ZGPAT; ZNF519; ZNF519; ZNF571; ZNF770; ZNF770; ZNF770; ZSCAN22; ZSCAN22 (directAnnotation).
UBE2D3jaspar__MA0185.1DEAF1 (inferredBy_Orthology).
UBE2D3metacluster_61.1DEAF1; DEAF1 (directAnnotation).
UBE2D3cisbp__M00788ZFY (inferredBy_Orthology).
UBE2D3hdpi__ZNF304ZNF304 (directAnnotation).
UBE2D3transfac_pro__M02844BCL6B (inferredBy_Orthology).
UBE2D3metacluster_125.2TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2D; TFAP2D; TFAP2D; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; ZNF611; ZNF611 (directAnnotation). TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E (inferredBy_Orthology).
UBE2D3metacluster_133.1ZNF304; ZNF304; ZSCAN22 (directAnnotation).
UBE2D3transfac_pro__M01199TRIM28 (directAnnotation).
UBE2D3kznf__ZNF682_Isakova2017_SMiLE-seqZNF682 (directAnnotation).
UBE2D3transfac_public__M00189TFAP2A; TFAP2B; TFAP2C (directAnnotation).
UBE2D3transfac_pro__M01219SP1 (directAnnotation). SP3 (inferredBy_Orthology).
UBE2D3transfac_pro__M03806ZBTB7C (directAnnotation).
UBE2D3transfac_pro__M00915TFAP2A; TFAP2B; TFAP2C (directAnnotation).
UBE2D3metacluster_33.8BRCA1; CHD2; CHD2; ETS1; NR3C1; ZBED1; ZBED1; ZBED1; ZBTB33; ZBTB33; ZBTB33; ZBTB33; ZBTB33; ZBTB33; ZBTB33 (directAnnotation). CHD2; ZBTB33 (inferredBy_Orthology).
UBE2D3metacluster_182.10ZFX (directAnnotation).
UBE2D3transfac_pro__M01090SMAD9 (inferredBy_Orthology).
UBE2D3flyfactorsurvey__Mad_FlyReg_FBgn0011648SMAD9 (inferredBy_Orthology).
UBE2D3transfac_pro__M00430E2F1 (directAnnotation).
UBE2D3metacluster_126.3LIN28B; LIN28B (directAnnotation).
UBE2D3transfac_pro__M04893TAF1 (directAnnotation).
UBE2D3homer__NANTGCSGCA_Zfp57ZFP57 (directAnnotation).
UBE2D3hdpi__HIP2UBE2K (directAnnotation).
UBE2D3kznf__ZFP57_Imbeault2017_RP_ChIP-seqZFP57 (directAnnotation).
UBE2D3hdpi__TIMELESSTIMELESS (directAnnotation).
UBE2D3metacluster_191.5SPDEF (inferredBy_Orthology).
UBE2D3transfac_pro__M00938E2F1 (directAnnotation).
UBE2D3transfac_pro__M01238DEAF1 (inferredBy_Orthology).
UBE2D3dbtfbs__ZNF407_representative_N1ZNF407 (directAnnotation).
UBE2D3hdpi__RARARARA (directAnnotation).
UBE2D3hdpi__ELF2ELF2 (directAnnotation).
UBE2D3taipale_tf_pairs__TFAP2C_DLX3_NSCCNNNRGGCANNNNNNTAATKR_CAP_reprDLX3; TFAP2C (directAnnotation).
UBE2D3jaspar__MA1583.1ZFP57 (directAnnotation).
UBE2D3transfac_pro__M02898SMAD3 (directAnnotation).
UBE2D3hdpi__HTATIP2HTATIP2 (directAnnotation).
UBE2D3transfac_pro__M04916TAF1 (directAnnotation).
UBE2D3transfac_pro__M07310SP5 (directAnnotation).
UBE2D3kznf__ZNF571_Imbeault2017_OM_RCADEZNF571 (directAnnotation).
UBE2D3jaspar__MA1721.1ZNF93 (directAnnotation).
UBE2D3dbtfbs__ZSCAN30_HEK293_ENCSR768VNZ_merged_N1ZSCAN30 (directAnnotation).
UBE2D3taipale_tf_pairs__ETV5_HES7_CCGGAANNNNNNCACGTG_CAPETV5; HES7 (directAnnotation).
UBE2D3metacluster_144.5ZNF610; ZNF610; ZNF610 (directAnnotation).
UBE2D3swissregulon__hs__CHD1CHD1 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."