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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target

Gene: RDX

Summary for RDX

Gene informationGene symbol

RDX

Ensembl ID

ENSG00000137710

Entrez ID

5962

Gene nameradixin
SynonymsDFNB24
Gene typeprotein_coding
UniProtAcc

NA


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Dataset with differentially expressed gene: RDX

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE140440

DU145 and PC cell linesCell lineProstate cancerProstate cancerChemotherapydocetaxelNAMalignant cells0.5846732.38e-06

GSE186960

Panc1 cell lineCell linePancreatic cancerPancreatic ductal adenocarcinoma (PDAC)ChemotherapygemcitabineNAMalignant cells-0.292323.60e-16

GSE207422_Tor

patientsTumor tissueLung cancerEGFR/ALK mutation negative non-small cell lung cancer (NSCLC)Immunotherapytoripalimab + carboplatin + (docetaxel or pemetrexed or emcitabine)postMalignant cells0.3224392.21e-15

GSE149214

PC9 cell lineCell lineLung cancerEGFR-mutated non-small cell lung cancer (NSCLC)Targeted therapyerlotinibNAMalignant cells0.3419331.28e-22

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostErythrocytes-0.361440.00e+00

GSE104987

MCF7 cell lineCell lineBreast cancerER+ breast cancerTargeted therapyKDM5-C70NAMalignant cells-0.6666830.00e+00

GSE108397

451Lu cell lineCell lineMelanomaMelanomaTargeted therapyPLX-4720NAMalignant cells-0.4230530.00e+00

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells-0.4292831.84e-32

GSE164897_Vem

A375 cell lineCell lineMelanomaBRAFV600E-mutant melanomaTargeted therapyvemurafenibNAMalignant cells-0.4127860.00e+00

GSE164897_VemCob

A375 cell lineCell lineMelanomaBRAFV600E-mutant melanomaTargeted therapyvemurafenib + combimetinibNAMalignant cells-0.7881590.00e+00

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Expression of RDX in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to RDX

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating RDX

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
RDXhsa-miR-848599.9298NM_002906
RDXhsa-miR-3613-3p99.0559NM_002906
RDXhsa-miR-545-3p98.5918NM_002906
RDXhsa-miR-501-5p96.7297NM_002906
RDXhsa-miR-500a-5p95.3453NM_002906
RDXhsa-miR-3529-3p94.9081NM_002906
RDXhsa-miR-128394.6656NM_002906
RDXhsa-miR-6809-5p93.7879NM_002906
RDXhsa-miR-6748-3p93.6149NM_001260492
RDXhsa-miR-127593.4861NM_001260492
RDXhsa-miR-2682-5p93.4426NM_002906
RDXhsa-miR-449c-5p93.4426NM_002906
RDXhsa-miR-34b-5p93.4426NM_002906
RDXhsa-miR-3614-5p93.3556NM_001260493
RDXhsa-miR-5197-5p92.3297NM_002906
RDXhsa-miR-7843-3p91.556NM_001260492
RDXhsa-miR-551b-5p90.8688NM_002906
RDXhsa-miR-6873-3p90.5034NM_002906
RDXhsa-miR-34690.4849NM_002906
RDXhsa-miR-430689.7884NM_001260492
RDXhsa-miR-57789.714NM_002906
RDXhsa-miR-4665-5p89.6731NM_001260492
RDXhsa-miR-676-5p89.6297NM_002906
RDXhsa-miR-548au-3p89.5418NM_002906
RDXhsa-let-7c-5p89.2261NM_002906
RDXhsa-let-7e-5p89.2261NM_002906
RDXhsa-miR-450089.2261NM_002906
RDXhsa-let-7a-5p89.2261NM_002906
RDXhsa-miR-98-5p89.2261NM_002906
RDXhsa-let-7b-5p89.2261NM_002906
RDXhsa-miR-676-3p89.0058NM_002906
RDXhsa-miR-4694-3p88.922NM_002906
RDXhsa-miR-122b-3p88.7089NM_002906
RDXhsa-miR-21-3p88.7089NM_002906
RDXhsa-miR-452588.5044NM_001260492
RDXhsa-miR-5010-5p88.5044NM_001260492
RDXhsa-miR-196a-5p88.1829NM_002906
RDXhsa-miR-196b-5p88.1829NM_002906
RDXhsa-miR-1277-5p87.8157NM_002906
RDXhsa-miR-7110-3p87.7102NM_002906
RDXhsa-miR-302e87.5936NM_002906
RDXhsa-miR-1236-3p87.4921NM_002906
RDXhsa-let-7i-5p87.4508NM_002906
RDXhsa-let-7f-5p87.4508NM_002906
RDXhsa-let-7g-5p87.4508NM_002906
RDXhsa-let-7c-3p86.4029NM_002906
RDXhsa-miR-103b86.3575NM_002906
RDXhsa-miR-4666a-3p86.3084NM_001260492
RDXhsa-miR-2355-3p86.2741NM_002906
RDXhsa-miR-876-3p85.6345NM_002906
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Motifs and transcription factors (TFs) regulating RDX

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
RDXjaspar__MA1548.1PLAGL2 (directAnnotation).
RDXmetacluster_22.36BACH2 (directAnnotation).
RDXmetacluster_22.17NFE2 (directAnnotation).
RDXmetacluster_22.19NFE2 (directAnnotation).
RDXtransfac_public__M00491PATZ1 (directAnnotation).
RDXmetacluster_135.11NR2C2 (directAnnotation).
RDXtfdimers__MD00038TFAP2C (directAnnotation).
RDXkznf__ZNF730_Imbeault2017_RP_RCADEZNF730 (directAnnotation).
RDXcisbp__M00968MTF2 (directAnnotation).
RDXmetacluster_160.20JUND; PRDM15 (directAnnotation).
RDXcisbp__M00341PAX6 (directAnnotation).
RDXmetacluster_198.3ZFP64 (directAnnotation).
RDXmetacluster_141.5NR3C1; THAP1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY2; YY2; ZNF597 (directAnnotation). YY1; YY1; YY1; YY2; ZFP42 (inferredBy_Orthology).
RDXmetacluster_151.1KAT7; PML; SMAD5; TAF1; ZFP37; ZGPAT; ZNF519; ZNF519; ZNF571; ZNF770; ZNF770; ZNF770; ZSCAN22; ZSCAN22 (directAnnotation).
RDXjaspar__MA0185.1DEAF1 (inferredBy_Orthology).
RDXmetacluster_61.1DEAF1; DEAF1 (directAnnotation).
RDXcisbp__M00788ZFY (inferredBy_Orthology).
RDXkznf__ZNF213_Schmitges2016_RCADEZNF213 (directAnnotation).
RDXmetacluster_175.1ZNF283 (directAnnotation).
RDXhdpi__ZNF304ZNF304 (directAnnotation).
RDXtransfac_pro__M02844BCL6B (inferredBy_Orthology).
RDXmetacluster_125.2TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2D; TFAP2D; TFAP2D; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; ZNF611; ZNF611 (directAnnotation). TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E (inferredBy_Orthology).
RDXtransfac_pro__M01199TRIM28 (directAnnotation).
RDXkznf__ZNF682_Isakova2017_SMiLE-seqZNF682 (directAnnotation).
RDXtransfac_public__M00189TFAP2A; TFAP2B; TFAP2C (directAnnotation).
RDXtransfac_pro__M03806ZBTB7C (directAnnotation).
RDXtransfac_pro__M00915TFAP2A; TFAP2B; TFAP2C (directAnnotation).
RDXhdpi__TP73TP73 (directAnnotation).
RDXswissregulon__hs__ETV6ETV6 (directAnnotation).
RDXmetacluster_138.2ELF1; ELF2; ELF4; ELK1; ELK1; ELK1; ELK1; ELK3; ELK4; ELK4; ELK4; ELK4; ELK4; ELK4; ELK4; ERF; ERG; ERG; ERG; ERG; ETS1; ETS1; ETS2; ETS2; ETV1; ETV1; ETV1; ETV2; ETV3; ETV4; ETV5; ETV5; FEV; FLI1; FLI1; GABPA; GABPA; KMT2B; SPDEF; SPDEF; SPDEF; ZBTB11; ZNF518A; ZNF580 (directAnnotation). ELF1; ELF2; ELF4; ELK1; ELK1; ELK3; ELK4; ERG; ETS1; ETS2; ETV1; ETV2; ETV3; ETV4; ETV5; FEV; FLI1; FLI1; GABPA; SPDEF; SPDEF (inferredBy_Orthology).
RDXtransfac_pro__M04826EP300 (directAnnotation).
RDXmetacluster_33.8BRCA1; CHD2; CHD2; ETS1; NR3C1; ZBED1; ZBED1; ZBED1; ZBTB33; ZBTB33; ZBTB33; ZBTB33; ZBTB33; ZBTB33; ZBTB33 (directAnnotation). CHD2; ZBTB33 (inferredBy_Orthology).
RDXmetacluster_141.6MZF1; TAF1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY2; YY2; ZFP42; ZFP42; ZFP42; ZFP42; ZFP42; ZFP42; ZNF597 (directAnnotation). TAF1; TAF1L (inferredBy_Orthology).
RDXtaipale_tf_pairs__E2F1_ELK1_SGCGCNNNNNCGGAAGN_CAP_reprE2F1; ELK1 (directAnnotation).
RDXtaipale_tf_pairs__FOXO1_ETV1_RCCGGAWGTKKN_CAPETV1; FOXO1 (directAnnotation).
RDXtransfac_pro__M01298MECP2 (directAnnotation).
RDXmetacluster_7.5PLAGL1; PLAGL1 (directAnnotation).
RDXtaipale_tf_pairs__MYBL1_EOMES_RSGTGNNNAACGK_CAP_reprEOMES; MYBL1 (directAnnotation).
RDXtransfac_pro__M00492STAT1 (directAnnotation).
RDXtaipale_tf_pairs__FOXO1_ETV4_RCCGGAWGTKKN_CAPETV4; FOXO1 (directAnnotation).
RDXhocomoco__TYY2_HUMAN.H11MO.0.DYY2 (directAnnotation).
RDXmetacluster_197.2E2F4; E2F7; E2F7; E2F7; E2F8; E2F8 (directAnnotation).
RDXmetacluster_45.6E2F1; E2F1; E2F1; E2F1; E2F1; E2F2; E2F2; E2F2; E2F3; E2F3; E2F3; E2F4; E2F4 (directAnnotation). E2F2; E2F3 (inferredBy_Orthology).
RDXjaspar__MA1460.1YY1 (inferredBy_Orthology).
RDXdbtfbs__GMEB1_K562_ENCSR928KOR_merged_N1GMEB1 (directAnnotation).
RDXmetacluster_101.3MYB (directAnnotation).
RDXswissregulon__mm__E2f7E2F7 (inferredBy_Orthology).
RDXtransfac_public__M00024E2F1 (directAnnotation).
RDXtransfac_pro__M02913SP140 (inferredBy_Orthology).
RDXtransfac_pro__M07483CXXC1 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.
Target nameDrug nameDrug IDDrug type
RDX"1D-myo-inositol 1,4,5-trisphosphate"

DB03401

small molecule
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1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."