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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: PHIP

Summary for PHIP

Gene informationGene symbol

PHIP

Ensembl ID

ENSG00000146247

Entrez ID

55023

Gene namepleckstrin homology domain interacting protein
SynonymsBRWD2|DCAF14|FLJ20705|ndrp|WDR11
Gene typeprotein_coding
UniProtAcc

Q8WWQ0


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Dataset with differentially expressed gene: PHIP

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE138267

CDXTumor tissueLung cancerSmall cell lung cancer (SCLC)ChemotherapyNANAMalignant cells0.4168740.00e+00

GSE164551

patientsBone marrow aspirateMultiple myelomaRefractory multiple myeloma (MM)ImmunotherapyCAR-TNAErythrocytes-0.2604142.74e-08

GSE164551

patientsBone marrow aspirateMultiple myelomaRefractory multiple myeloma (MM)ImmunotherapyCAR-TNAMono/Macro0.2883775.39e-03

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostCD8+ T cells-0.2513771.06e-16

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostErythrocytes-0.3565820.00e+00

GSE115251

Kelly cell lineCell lineNeuroblastomaNeuroblastomaTargeted therapyTAE684NAMalignant cells0.2505360.00e+00

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Expression of PHIP in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to PHIP

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating PHIP

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
PHIPhsa-miR-5011-5p100NM_017934
PHIPhsa-miR-190a-3p100NM_017934
PHIPhsa-miR-477599.9752NM_017934
PHIPhsa-miR-316399.9432NM_017934
PHIPhsa-miR-568099.885NM_017934
PHIPhsa-miR-590-3p99.8818NM_017934
PHIPhsa-miR-4789-3p99.7137NM_017934
PHIPhsa-miR-95-5p99.6988NM_017934
PHIPhsa-miR-203a-3p99.4708NM_017934
PHIPhsa-let-7c-3p99.4583NM_017934
PHIPhsa-miR-1277-5p99.4376NM_017934
PHIPhsa-miR-5692a99.4133NM_017934
PHIPhsa-miR-428299.2024NM_017934
PHIPhsa-miR-56899.0608NM_017934
PHIPhsa-miR-392498.928NM_017934
PHIPhsa-miR-4694-3p98.8661NM_017934
PHIPhsa-miR-513c-3p98.8605NM_017934
PHIPhsa-miR-513a-3p98.8605NM_017934
PHIPhsa-miR-1213698.7225NM_017934
PHIPhsa-miR-20a-3p98.6529NM_017934
PHIPhsa-miR-4482-3p98.6492NM_017934
PHIPhsa-miR-548c-3p98.5281NM_017934
PHIPhsa-miR-548az-5p98.5228NM_017934
PHIPhsa-miR-548t-5p98.5228NM_017934
PHIPhsa-miR-548ar-3p98.4413NM_017934
PHIPhsa-miR-3606-3p98.291NM_017934
PHIPhsa-miR-96-5p97.8536NM_017934
PHIPhsa-miR-548e-3p97.8122NM_017934
PHIPhsa-miR-548a-3p97.8122NM_017934
PHIPhsa-miR-548f-3p97.8122NM_017934
PHIPhsa-miR-548bc97.8122NM_017934
PHIPhsa-miR-579-3p97.7969NM_017934
PHIPhsa-miR-664b-3p97.7969NM_017934
PHIPhsa-miR-569697.6764NM_017934
PHIPhsa-miR-1213397.6507NM_017934
PHIPhsa-miR-1271-5p97.6507NM_017934
PHIPhsa-miR-6509-3p97.5947NM_017934
PHIPhsa-miR-548az-3p97.5569NM_017934
PHIPhsa-miR-7152-5p97.4036NM_017934
PHIPhsa-miR-664a-3p97.3336NM_017934
PHIPhsa-miR-60797.123NM_017934
PHIPhsa-miR-335-3p97.115NM_017934
PHIPhsa-miR-4703-5p96.9778NM_017934
PHIPhsa-miR-186-5p96.8328NM_017934
PHIPhsa-miR-520d-5p96.8294NM_017934
PHIPhsa-miR-524-5p96.8294NM_017934
PHIPhsa-miR-5582-3p96.6002NM_017934
PHIPhsa-miR-364695.974NM_017934
PHIPhsa-miR-368695.9414NM_017934
PHIPhsa-miR-3614-5p95.8755NM_017934
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Motifs and transcription factors (TFs) regulating PHIP

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
PHIPmetacluster_141.6MZF1; TAF1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY2; YY2; ZFP42; ZFP42; ZFP42; ZFP42; ZFP42; ZFP42; ZNF597 (directAnnotation). TAF1; TAF1L (inferredBy_Orthology).
PHIPtaipale_cyt_meth__ZNF385D_NCGTCGCGACGN_eDBD_methZNF385D (directAnnotation).
PHIPjaspar__MA0748.2YY2 (directAnnotation).
PHIPjaspar__MA1460.1YY1 (inferredBy_Orthology).
PHIPtransfac_pro__M00652NRF1 (directAnnotation).
PHIPmetacluster_55.3E2F6; EGR1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; ZBTB2; ZSCAN10 (directAnnotation). NFE2L1; NRF1; NRF1; NRF1 (inferredBy_Orthology).
PHIPhdpi__EBF1EBF1 (directAnnotation).
PHIPmetacluster_101.3MYB (directAnnotation).
PHIPhdpi__TP73TP73 (directAnnotation).
PHIPmetacluster_34.3EGR1; ETS1; SETDB1; SIX5; SIX5; ZNF143; ZNF76 (directAnnotation).
PHIPtransfac_pro__M04950EGR1 (directAnnotation).
PHIPmetacluster_33.8BRCA1; CHD2; CHD2; ETS1; NR3C1; ZBED1; ZBED1; ZBED1; ZBTB33; ZBTB33; ZBTB33; ZBTB33; ZBTB33; ZBTB33; ZBTB33 (directAnnotation). CHD2; ZBTB33 (inferredBy_Orthology).
PHIPmetacluster_45.6E2F1; E2F1; E2F1; E2F1; E2F1; E2F2; E2F2; E2F2; E2F3; E2F3; E2F3; E2F4; E2F4 (directAnnotation). E2F2; E2F3 (inferredBy_Orthology).
PHIPtaipale_tf_pairs__E2F3_EOMES_NNGYGNNNNGGCGCSNNNNCRCNN_CAP_reprE2F3; EOMES (directAnnotation).
PHIPmetacluster_138.2ELF1; ELF2; ELF4; ELK1; ELK1; ELK1; ELK1; ELK3; ELK4; ELK4; ELK4; ELK4; ELK4; ELK4; ELK4; ERF; ERG; ERG; ERG; ERG; ETS1; ETS1; ETS2; ETS2; ETV1; ETV1; ETV1; ETV2; ETV3; ETV4; ETV5; ETV5; FEV; FLI1; FLI1; GABPA; GABPA; KMT2B; SPDEF; SPDEF; SPDEF; ZBTB11; ZNF518A; ZNF580 (directAnnotation). ELF1; ELF2; ELF4; ELK1; ELK1; ELK3; ELK4; ERG; ETS1; ETS2; ETV1; ETV2; ETV3; ETV4; ETV5; FEV; FLI1; FLI1; GABPA; SPDEF; SPDEF (inferredBy_Orthology).
PHIPtaipale_tf_pairs__E2F1_ELK1_SGCGCNNNNNNNNNNCGGAAGN_CAP_reprE2F1; ELK1 (directAnnotation).
PHIPstark__RCGCMATTWYY1 (inferredBy_Orthology).
PHIPswissregulon__hs__GMEB2GMEB2 (directAnnotation).
PHIPhdpi__TIMELESSTIMELESS (directAnnotation).
PHIPtaipale_cyt_meth__ZNF385D_NCGTCGCGACGN_eDBD_reprZNF385D (directAnnotation).
PHIPtransfac_pro__M05893ZNF676 (directAnnotation).
PHIPtaipale_tf_pairs__E2F1_EOMES_RGGTGTNNNGGCGSNNTNNCRSNN_CAPE2F1; EOMES (directAnnotation).
PHIPtransfac_pro__M06340ZNF790 (directAnnotation).
PHIPhomer__NANTGCSGCA_Zfp57ZFP57 (directAnnotation).
PHIPmetacluster_198.7AHR; ZBTB14; ZBTB14; ZBTB14 (directAnnotation).
PHIPtaipale_tf_pairs__ETV2_SOX15_RSCGGAANNNNNNYWTTGT_CAP_reprETV2; SOX15 (directAnnotation).
PHIPswissregulon__mm__E2f7E2F7 (inferredBy_Orthology).
PHIPtaipale_tf_pairs__TFAP2C_E2F8_NNTCCCGCNNNCCNNNGGC_CAP_reprE2F8; TFAP2C (directAnnotation).
PHIPdbtfbs__ZBTB8A_HEK293_ENCSR481FEC_merged_N1ZBTB8A (directAnnotation).
PHIPmetacluster_135.10MBD2; MBD2; MECP2; MECP2 (directAnnotation).
PHIPkznf__ZNF846_Imbeault2017_RP_ChIP-seqZNF846 (directAnnotation).
PHIPtransfac_pro__M12686ZBTB10 (directAnnotation).
PHIPtaipale_cyt_meth__E2F2_NCGCGCGCGCM_eDBD_methE2F2 (directAnnotation).
PHIPmetacluster_143.14ZNF320 (directAnnotation).
PHIPkznf__ZNF383_Imbeault2017_RP_RCADEZNF383 (directAnnotation).
PHIPdbtfbs__ZBTB10_HEK293_ENCSR004PLU_merged_N1ZBTB10 (directAnnotation).
PHIPmetacluster_144.8ZNF30; ZNF30 (directAnnotation).
PHIPtaipale_cyt_meth__ZBTB37_NYACCGCRNNYACCGYR_eDBD_meth_reprZBTB37 (directAnnotation).
PHIPmetacluster_23.9GLIS1; GLIS3; GLIS3; ZNF575 (directAnnotation). GLIS2; GLIS2; GLIS3; ZNF575; ZXDA; ZXDA; ZXDA; ZXDA; ZXDB; ZXDB; ZXDB; ZXDB; ZXDC; ZXDC; ZXDC; ZXDC (inferredBy_Orthology).
PHIPmetacluster_61.1DEAF1; DEAF1 (directAnnotation).
PHIPkznf__ZNF548_Imbeault2017_RP_RCADEZNF548 (directAnnotation).
PHIPkznf__ZNF141_Imbeault2017_RP_RCADEZNF141 (directAnnotation).
PHIPtransfac_pro__M04617ZBTB7A (directAnnotation).
PHIPtransfac_pro__M01973PLAG1 (directAnnotation).
PHIPmetacluster_151.2ZNF23 (directAnnotation).
PHIPmetacluster_151.1KAT7; PML; SMAD5; TAF1; ZFP37; ZGPAT; ZNF519; ZNF519; ZNF571; ZNF770; ZNF770; ZNF770; ZSCAN22; ZSCAN22 (directAnnotation).
PHIPtaipale_tf_pairs__TFAP2C_HES7_NNCRCGYGNNNNNNSCCNNNGGS_CAP_reprHES7; TFAP2C (directAnnotation).
PHIPmetacluster_66.1MTF1; ZNF320; ZNF320; ZNF320; ZNF782 (directAnnotation).
PHIPcisbp__M01864EGR1 (inferredBy_Orthology).
PHIPtfdimers__MD00391KLF4 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."