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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: NDFIP1

Summary for NDFIP1

Gene informationGene symbol

NDFIP1

Ensembl ID

ENSG00000131507

Entrez ID

80762

Gene nameNedd4 family interacting protein 1
SynonymsMGC10924|N4WBP5
Gene typeprotein_coding
UniProtAcc

Q9BT67


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Dataset with differentially expressed gene: NDFIP1

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE169246_PacBlood

patientsPeripheral blood mononuclear cellsBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelpreCD4+ T cells0.4235030.00e+00

GSE164551

patientsBone marrow aspirateMultiple myelomaRefractory multiple myeloma (MM)ImmunotherapyCAR-TNAErythrocytes-0.2878213.47e-12

GSE164551

patientsBone marrow aspirateMultiple myelomaRefractory multiple myeloma (MM)ImmunotherapyCAR-TNACD4+ T cells-0.3049751.07e-02

PMID34715028

patientsTumor tissueKidney cancerClear cell renal cell carcinoma (ccRCC)ImmunotherapynivolumabpostCD4+ T cells0.486031.55e-38

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostErythrocytes0.3382561.82e-20

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpreMalignant cells-0.2833210.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpreErythrocytes0.348286.91e-12

GSE131984_JQ1

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1NAMalignant cells-0.2992114.56e-13

GSE131984_JQ1Pac

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + paclitaxelNAMalignant cells-0.4188521.79e-15

GSE131984_JQ1Pal

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + palbociclibNAMalignant cells-0.3593321.74e-15

GSE131984_Pal

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapypalbociclibNAMalignant cells-0.2626463.86e-05

GSE108397

451Lu cell lineCell lineMelanomaMelanomaTargeted therapyPLX-4720NAMalignant cells-0.2632275.18e-44

GSE115251

Kelly cell lineCell lineNeuroblastomaNeuroblastomaTargeted therapyTAE684NAMalignant cells-0.3313020.00e+00

GSE164897_VemCob

A375 cell lineCell lineMelanomaBRAFV600E-mutant melanomaTargeted therapyvemurafenib + combimetinibNAMalignant cells-0.3496050.00e+00

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Expression of NDFIP1 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to NDFIP1

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating NDFIP1

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
NDFIP1hsa-miR-443894.3418NM_030571
NDFIP1hsa-miR-101-3p94.0889NM_030571
NDFIP1hsa-miR-153-5p91.5958NM_030571
NDFIP1hsa-miR-580-5p91.3087NM_030571
NDFIP1hsa-miR-338-5p90.8578NM_030571
NDFIP1hsa-miR-1277-3p90.539NM_030571
NDFIP1hsa-miR-2276-3p90.4544NM_030571
NDFIP1hsa-miR-366590.2508NM_030571
NDFIP1hsa-miR-7110-5p89.973NM_030571
NDFIP1hsa-miR-6842-5p89.973NM_030571
NDFIP1hsa-miR-196a-3p89.0237NM_030571
NDFIP1hsa-miR-130588.55NM_030571
NDFIP1hsa-miR-520g-3p88.5123NM_030571
NDFIP1hsa-miR-520h88.5123NM_030571
NDFIP1hsa-miR-200a-5p87.9304NM_030571
NDFIP1hsa-miR-200b-5p87.9304NM_030571
NDFIP1hsa-miR-480187.4514NM_030571
NDFIP1hsa-miR-124687.1358NM_030571
NDFIP1hsa-miR-4731-3p87.1266NM_030571
NDFIP1hsa-miR-808586.7772NM_030571
NDFIP1hsa-miR-6731-5p86.7772NM_030571
NDFIP1hsa-miR-548e-5p86.1161NM_030571
NDFIP1hsa-miR-6894-5p85.7122NM_030571
NDFIP1hsa-miR-391085.3896NM_030571
NDFIP1hsa-miR-139-5p85.2164NM_030571
NDFIP1hsa-miR-3074-5p84.6604NM_030571
NDFIP1hsa-miR-4777-5p84.5035NM_030571
NDFIP1hsa-miR-205-3p83.9862NM_030571
NDFIP1hsa-miR-6752-5p83.909NM_030571
NDFIP1hsa-miR-526b-5p83.1971NM_030571
NDFIP1hsa-miR-6510-3p82.1678NM_030571
NDFIP1hsa-miR-582-5p81.9126NM_030571
NDFIP1hsa-miR-5197-5p81.5039NM_030571
NDFIP1hsa-miR-6728-3p81.3273NM_030571
NDFIP1hsa-miR-431381.0345NM_030571
NDFIP1hsa-miR-499b-3p81.0279NM_030571
NDFIP1hsa-miR-499a-3p81.0279NM_030571
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Motifs and transcription factors (TFs) regulating NDFIP1

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
NDFIP1cisbp__M00341PAX6 (directAnnotation).
NDFIP1taipale_tf_pairs__TFAP2C_E2F8_NNTCCCGCNNNCCNNNGGC_CAP_reprE2F8; TFAP2C (directAnnotation).
NDFIP1transfac_pro__M01199TRIM28 (directAnnotation).
NDFIP1taipale_tf_pairs__GCM1_ETV1_RTRNNGGCGGAAGTN_CAPETV1; GCM1 (directAnnotation).
NDFIP1tfdimers__MD00441OVOL2; RELA (directAnnotation).
NDFIP1metacluster_163.1KLF1; KLF1; KLF1; KLF1; KLF1; KLF1; KLF1; KLF10; KLF10; KLF12; KLF12; KLF12; KLF13; KLF16; KLF17; KLF2; KLF3; KLF3; KLF3; KLF3; KLF4; KLF4; KLF4; KLF4; KLF4; KLF5; KLF5; KLF5; KLF5; KLF6; KLF6; KLF6; KLF7; KLF9; KLF9; SALL4; SP1; ZNF148; ZNF148; ZNF526 (directAnnotation). EGR4; KLF1; KLF1; KLF12; KLF12; KLF12; KLF13; KLF14; KLF14; KLF14; KLF14; KLF14; KLF14; KLF16; KLF17; KLF17; KLF17; KLF17; KLF17; KLF18; KLF18; KLF18; KLF18; KLF18; KLF18; KLF2; KLF2; KLF3; KLF4; KLF4; KLF4; KLF4; KLF4; KLF4; KLF5; KLF5; KLF5; KLF6; KLF7; KLF7; KLF8; KLF8; KLF9; SP4; SP5; SP5; SP6; SP7; SP8; SP9; ZNF526 (inferredBy_Orthology).
NDFIP1metacluster_133.1ZNF304; ZNF304; ZSCAN22 (directAnnotation).
NDFIP1metacluster_126.3LIN28B; LIN28B (directAnnotation).
NDFIP1cisbp__M00968MTF2 (directAnnotation).
NDFIP1transfac_pro__M12697ZNF142 (directAnnotation).
NDFIP1taipale_tf_pairs__E2F1_ELK1_SGCGCNNNNNNNNNNNCGGAAGN_CAP_reprE2F1; ELK1 (directAnnotation).
NDFIP1kznf__ZNF213_Schmitges2016_RCADEZNF213 (directAnnotation).
NDFIP1kznf__ZFP57_Imbeault2017_RP_ChIP-seqZFP57 (directAnnotation).
NDFIP1metacluster_160.20JUND; PRDM15 (directAnnotation).
NDFIP1metacluster_24.5ZNF675; ZNF675 (directAnnotation).
NDFIP1transfac_public__M00491PATZ1 (directAnnotation).
NDFIP1metacluster_144.5ZNF610; ZNF610; ZNF610 (directAnnotation).
NDFIP1taipale_tf_pairs__GCM2_HES7_RTRNKGGTNNNGCACGYGNN_CAP_reprGCM2; HES7 (directAnnotation).
NDFIP1taipale_tf_pairs__E2F3_TBX21_NGGTGTGNNNGGCGCSN_CAP_reprE2F3; TBX21 (directAnnotation).
NDFIP1taipale_tf_pairs__GCM1_FIGLA_CASSTGNNNNNNNNNNTGCGGG_CAP_reprFIGLA; GCM1 (directAnnotation).
NDFIP1taipale_tf_pairs__ETV5_TCF3_RNCGGAAGNNNNNCASSTGN_CAP_reprETV5; TCF3 (directAnnotation).
NDFIP1transfac_pro__M01298MECP2 (directAnnotation).
NDFIP1transfac_pro__M00492STAT1 (directAnnotation).
NDFIP1taipale_tf_pairs__E2F1_ELK1_SGCGCNNNNNCGGAAGN_CAP_reprE2F1; ELK1 (directAnnotation).
NDFIP1taipale_tf_pairs__ETV5_EVX1_RSCGGWAATKR_CAPETV5; EVX1 (directAnnotation).
NDFIP1dbtfbs__GMEB1_K562_ENCSR928KOR_merged_N1GMEB1 (directAnnotation).
NDFIP1metacluster_161.4LHX9 (directAnnotation).
NDFIP1taipale_tf_pairs__ETV2_TEF_RSCGGAWNTTRCGYAAN_CAPETV2; TEF (directAnnotation).
NDFIP1metacluster_161.3LHX9 (directAnnotation).
NDFIP1flyfactorsurvey__Mad_FlyReg_FBgn0011648SMAD9 (inferredBy_Orthology).
NDFIP1transfac_pro__M07310SP5 (directAnnotation).
NDFIP1cisbp__M07938E2F1 (directAnnotation).
NDFIP1transfac_pro__M02933ZBTB14 (inferredBy_Orthology).
NDFIP1transfac_pro__M04817ZBTB33 (directAnnotation).
NDFIP1metacluster_67.2ZNF501 (directAnnotation). ACAA1; E2F2; E2F2; E2F3; E2F3; FOXN4 (inferredBy_Orthology).
NDFIP1tfdimers__MD00483ZBTB14 (directAnnotation).
NDFIP1transfac_pro__M02089E2F3 (directAnnotation).
NDFIP1transfac_pro__M07317CTBP1 (directAnnotation).
NDFIP1transfac_pro__M00716ZBTB14 (directAnnotation).
NDFIP1transfac_pro__M03806ZBTB7C (directAnnotation).
NDFIP1transfac_pro__M01090SMAD9 (inferredBy_Orthology).
NDFIP1transfac_pro__M04893TAF1 (directAnnotation).
NDFIP1jaspar__MA0535.1SMAD9 (inferredBy_Orthology).
NDFIP1transfac_pro__M00803E2F1; E2F3; E2F4; TFDP1 (directAnnotation).
NDFIP1transfac_pro__M04916TAF1 (directAnnotation).
NDFIP1kznf__ZNF548_Imbeault2017_RP_RCADEZNF548 (directAnnotation).
NDFIP1idmmpmm__MadSMAD9 (inferredBy_Orthology).
NDFIP1hdpi__RARARARA (directAnnotation).
NDFIP1hdpi__HIP2UBE2K (directAnnotation).
NDFIP1transfac_pro__M01240GTF2IRD1 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."