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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target

Gene: LDHA

Summary for LDHA

Gene informationGene symbol

LDHA

Ensembl ID

ENSG00000288299

Entrez ID

3939

Gene namelactate dehydrogenase A
SynonymsNA
Gene typeprotein_coding
UniProtAcc

NA


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Dataset with differentially expressed gene: LDHA

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE140440

DU145 and PC cell linesCell lineProstate cancerProstate cancerChemotherapydocetaxelNAMalignant cells-0.4484562.48e-02

GSE186960

Panc1 cell lineCell linePancreatic cancerPancreatic ductal adenocarcinoma (PDAC)ChemotherapygemcitabineNAMalignant cells0.3475315.04e-32

GSE138267

CDXTumor tissueLung cancerSmall cell lung cancer (SCLC)ChemotherapyNANAMalignant cells0.6556920.00e+00

GSE163836

FCIBC02 cell lineCell lineBreast cancerInflammatory breast cancerChemotherapypaclitaxelNAMalignant cells-0.8822980.00e+00

GSE169246_PacBlood

patientsPeripheral blood mononuclear cellsBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelpostCD8+ T cells0.3857610.00e+00

GSE169246_PacBlood

patientsPeripheral blood mononuclear cellsBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelpostcDCs0.4345463.97e-09

GSE169246_PacBlood

patientsPeripheral blood mononuclear cellsBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelpostProgenitors0.5315975.22e-03

GSE169246_PacTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelpostMono/Macro0.5372121.78e-26

GSE169246_PacTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelpostcDCs0.5455241.39e-09

GSE169246_PacTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelpostNK cells0.7717170.00e+00

GSE169246_PacTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelprePlasma cells0.3485591.46e-31

GSE169246_PacTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelpreB cells-0.2796228.36e-08

GSE169246_PacTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelpreMono/Macro0.5688021.23e-20

GSE153697

patientsBone marrow aspirateAcute lymphoblastic leukemiaRelapsed B-cell acute lymphoblastic leukemia (B-ALL)Immunotherapyanti-CD19 CAR-TNAMalignant cells0.274562.27e-12

GSE169246_PacAteBlood

patientsPeripheral blood mononuclear cellsBreast cancerAdvanced triple-negative breast cancer (TNBC)Immunotherapyatezolizumab + paclitaxelprecDCs0.3263888.47e-06

GSE169246_PacAteTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)Immunotherapyatezolizumab + paclitaxelpostCD8+ T cells0.2987132.64e-31

GSE169246_PacAteTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)Immunotherapyatezolizumab + paclitaxelpostCD4+ T cells0.3526290.00e+00

GSE169246_PacAteTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)Immunotherapyatezolizumab + paclitaxelpreNK cells-0.6612470.00e+00

GSE169246_PacAteTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)Immunotherapyatezolizumab + paclitaxelpreMono/Macro0.4413828.69e-07

GSE164551

patientsBone marrow aspirateMultiple myelomaRefractory multiple myeloma (MM)ImmunotherapyCAR-TNACD8+ T cells-0.7828555.76e-09

GSE164551

patientsBone marrow aspirateMultiple myelomaRefractory multiple myeloma (MM)ImmunotherapyCAR-TNANK cells-0.6948431.78e-02

PMID34715028

patientsTumor tissueKidney cancerClear cell renal cell carcinoma (ccRCC)ImmunotherapynivolumabpostCD8+ T cells-0.6089740.00e+00

PMID34715028

patientsTumor tissueKidney cancerClear cell renal cell carcinoma (ccRCC)ImmunotherapynivolumabpostCD4+ T cells-0.9234380.00e+00

GSE150930

patientsPeripheral blood mononuclear cellsChronic lymphocytic leukemiaMucosa-assisted lymphoid tissue (MALT) lymphomaImmunotherapyrituximab + cyclophosphamide + fludarabineNAMalignant cells-0.3799874.62e-15

GSE207422_Sin

patientsTumor tissueLung cancerEGFR/ALK mutation negative non-small cell lung cancer (NSCLC)Immunotherapysintilimab + carboplatin + (docetaxel or pemetrexed or emcitabine)postB cells0.3736292.82e-03

GSE207422_Sin

patientsTumor tissueLung cancerEGFR/ALK mutation negative non-small cell lung cancer (NSCLC)Immunotherapysintilimab + carboplatin + (docetaxel or pemetrexed or emcitabine)postMono/Macro0.5366174.58e-09

GSE207422_Sin

patientsTumor tissueLung cancerEGFR/ALK mutation negative non-small cell lung cancer (NSCLC)Immunotherapysintilimab + carboplatin + (docetaxel or pemetrexed or emcitabine)postCD8+ T cells0.9067770.00e+00

GSE207422_Sin

patientsTumor tissueLung cancerEGFR/ALK mutation negative non-small cell lung cancer (NSCLC)Immunotherapysintilimab + carboplatin + (docetaxel or pemetrexed or emcitabine)postMalignant cells1.413632.41e-12

GSE207422_Sin

patientsTumor tissueLung cancerEGFR/ALK mutation negative non-small cell lung cancer (NSCLC)Immunotherapysintilimab + carboplatin + (docetaxel or pemetrexed or emcitabine)postCD4+ T cells0.6072587.44e-31

GSE197268_Tisa-cel

patientsPeripheral blood mononuclear cellsAcute lymphoblastic leukemiaLarge B-cell acute lymphoblastic leukemia (B-ALL)Immunotherapytisa-cel (CAR-T)preNK cells-0.25427.14e-12

GSE207422_Tor

patientsTumor tissueLung cancerEGFR/ALK mutation negative non-small cell lung cancer (NSCLC)Immunotherapytoripalimab + carboplatin + (docetaxel or pemetrexed or emcitabine)postCD4+ T cells-0.3438976.07e-09

GSE207422_Tor

patientsTumor tissueLung cancerEGFR/ALK mutation negative non-small cell lung cancer (NSCLC)Immunotherapytoripalimab + carboplatin + (docetaxel or pemetrexed or emcitabine)postMalignant cells-0.9661270.00e+00

GSE161801_PI

patientsBone marrow aspirateMultiple myelomaRefractory multiple myeloma (MM)Targeted therapycarfilzomib + dexamethasonepostCD8+ T cells-0.2698863.22e-40

GSE161801_PI

patientsBone marrow aspirateMultiple myelomaRefractory multiple myeloma (MM)Targeted therapycarfilzomib + dexamethasonepreCD8+ T cells0.3132994.71e-40

GSE161801_PI

patientsBone marrow aspirateMultiple myelomaRefractory multiple myeloma (MM)Targeted therapycarfilzomib + dexamethasonepreMalignant cells-0.3614453.97e-26

GSE139386

H3122 cell lineCell lineLung cancerEML4-ALK fusion-positive non-small cell lung cancer (NSCLC)Targeted therapyceritinibNAMalignant cells-0.7836750.00e+00

GSE161195

patientsBone marrow aspirateMultiple myelomaRefractory multiple myeloma (MM)Targeted therapyDARA-KRD (daratumumab + carfilzomib + lenalidomide + dexamethasone)postMalignant cells0.5046670.00e+00

GSE161195

patientsBone marrow aspirateMultiple myelomaRefractory multiple myeloma (MM)Targeted therapyDARA-KRD (daratumumab + carfilzomib + lenalidomide + dexamethasone)preMalignant cells0.4033340.00e+00

GSE158457

PDX cellsCell lineAcute lymphoblastic leukemiaT-cell acute lymphoblastic leukemia (ALL)Targeted therapydasatinibNAMalignant cells-1.297750.00e+00

GSE149214

PC9 cell lineCell lineLung cancerEGFR-mutated non-small cell lung cancer (NSCLC)Targeted therapyerlotinibNAMalignant cells-0.264391.13e-04

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostMalignant cells0.7160120.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpreMalignant cells-0.3516070.00e+00

GSE131984_JQ1

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1NAMalignant cells-0.2667781.57e-21

GSE131984_JQ1Pac

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + paclitaxelNAMalignant cells-0.3204328.67e-19

GSE131984_JQ1Pal

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + palbociclibNAMalignant cells-0.6455320.00e+00

GSE131984_Pal

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapypalbociclibNAMalignant cells-0.4351763.59e-31

GSE108397

451Lu cell lineCell lineMelanomaMelanomaTargeted therapyPLX-4720NAMalignant cells-0.4091470.00e+00

GSE161801_IMiD

patientsBone marrow aspirateMultiple myelomaRefractory multiple myeloma (MM)Targeted therapypomalidomide + dexamethasone OR lenalidomide + dexamethasonepostCD4+ T cells-0.3547551.02e-03

GSE161801_IMiD

patientsBone marrow aspirateMultiple myelomaRefractory multiple myeloma (MM)Targeted therapypomalidomide + dexamethasone OR lenalidomide + dexamethasonepostMalignant cells-0.3243250.00e+00

GSE161801_IMiD

patientsBone marrow aspirateMultiple myelomaRefractory multiple myeloma (MM)Targeted therapypomalidomide + dexamethasone OR lenalidomide + dexamethasonepreNK cells-0.2534946.16e-14

GSE161801_IMiD

patientsBone marrow aspirateMultiple myelomaRefractory multiple myeloma (MM)Targeted therapypomalidomide + dexamethasone OR lenalidomide + dexamethasonepreCD8+ T cells-0.2614683.81e-37

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells-0.3590772.71e-20

GSE115251

Kelly cell lineCell lineNeuroblastomaNeuroblastomaTargeted therapyTAE684NAMalignant cells-0.3166950.00e+00

GSE164897_Vem

A375 cell lineCell lineMelanomaBRAFV600E-mutant melanomaTargeted therapyvemurafenibNAMalignant cells0.302820.00e+00

GSE164897_VemCob

A375 cell lineCell lineMelanomaBRAFV600E-mutant melanomaTargeted therapyvemurafenib + combimetinibNAMalignant cells0.7027910.00e+00

GSE164897_VemTra

A375 cell lineCell lineMelanomaB+E2:E57RAFV600E-mutant melanomaTargeted therapyvemurafenib + trametinibNAMalignant cells-0.6705580.00e+00

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Expression of LDHA in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to LDHA

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.
Gene symbolMechanism

LDHA

Unusual Activation of Pro-survival Pathway
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MicroRNAs (miRNA) regulating LDHA

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
LDHAhsa-miR-120895.5603NM_001165416
LDHAhsa-miR-480192.1861NM_001165415
LDHAhsa-miR-6751-5p90.8411NM_001165415
LDHAhsa-miR-4731-3p90.3968NM_001165415
LDHAhsa-miR-642b-5p87.0958NM_001165415
LDHAhsa-miR-4778-3p86.6396NM_001165416
LDHAhsa-miR-34a-5p86.3673NM_001165416
LDHAhsa-miR-449a86.3673NM_001165416
LDHAhsa-miR-6803-5p85.4096NM_001165415
LDHAhsa-miR-33b-5p85.2226NM_001165415
LDHAhsa-miR-33a-5p85.2226NM_001165415
LDHAhsa-miR-6760-3p85.2039NM_001165416
LDHAhsa-miR-608383.4249NM_001165415
LDHAhsa-miR-449b-5p82.6412NM_001165416
LDHAhsa-miR-34c-5p82.6412NM_001165416
LDHAhsa-miR-431781.2058NM_001165415
LDHAhsa-miR-6736-3p80.6535NM_001165416
LDHAhsa-miR-466080.2698NM_001165416
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Motifs and transcription factors (TFs) regulating LDHA

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
LDHAtaipale_tf_pairs__ETV2_DLX3_RSCGGAANNNNNNNTAATKR_CAP_reprDLX3; ETV2 (directAnnotation).
LDHAtransfac_pro__M06362ZNF730 (directAnnotation).
LDHAmetacluster_152.2TWIST1 (directAnnotation).
LDHAmetacluster_22.20MAFG (directAnnotation).
LDHAmetacluster_22.17NFE2 (directAnnotation).
LDHAtransfac_pro__M06537CTCFL (directAnnotation).
LDHAhdpi__TEAD1TEAD1 (directAnnotation).
LDHAtransfac_pro__M06764ZNF112 (directAnnotation).
LDHAmetacluster_22.33MAFK (inferredBy_Orthology).
LDHAkznf__ZNF716_Imbeault2017_RP_RCADEZNF716 (directAnnotation).
LDHAtaipale_cyt_meth__KLF3_NRCCGCAGCCCN_FL_meth_reprKLF3 (directAnnotation).
LDHAtransfac_pro__M06251ZSCAN2 (inferredBy_Orthology).
LDHAtransfac_pro__M07448ZBED1 (directAnnotation).
LDHAtransfac_pro__M05886ZNF619 (directAnnotation).
LDHAtransfac_pro__M05702ZNF20 (directAnnotation).
LDHAtaipale_tf_pairs__HOXB2_ETV4_ACCGGAAATGAN_CAPETV4; HOXB2 (directAnnotation).
LDHAtaipale__ELK1_full_NACTTCCGSCGGAARMN_reprELK1 (directAnnotation).
LDHAhomer__NCCACGTG_c-MycMYC (directAnnotation).
LDHAtaipale_tf_pairs__GCM1_ETV1_RTRNNGGCGGAAGTN_CAPETV1; GCM1 (directAnnotation).
LDHAhdpi__ELF2ELF2 (directAnnotation).
LDHAmetacluster_81.7CREB1 (directAnnotation).
LDHAtaipale_cyt_meth__ZNF385D_NCGTCGCGACGN_eDBD_methZNF385D (directAnnotation).
LDHAtransfac_pro__M05844ZNF628 (inferredBy_Orthology).
LDHAmetacluster_160.2FEZF1; FEZF2 (directAnnotation).
LDHAtransfac_pro__M05939ZNF471 (directAnnotation).
LDHAmetacluster_102.2ZBED1 (directAnnotation).
LDHAtransfac_pro__M01182HINFP (directAnnotation).
LDHAtransfac_pro__M06991MAFF (directAnnotation).
LDHAtaipale_tf_pairs__GCM1_HOXB13_NCCCGCANNMATAAA_CAP_reprGCM1; HOXB13 (directAnnotation).
LDHAhocomoco__E2F8_HUMAN.H11MO.0.DE2F8 (directAnnotation).
LDHAhomer__TACGTGCV_HIF-1aHIF1A (directAnnotation).
LDHAtransfac_pro__M05919ZIM3 (directAnnotation).
LDHAtaipale_cyt_meth__ZBTB2_NTTTMCGGTWAN_eDBDZBTB2 (directAnnotation).
LDHAkznf__CTCF_Transfac.7_TransfacCTCF (directAnnotation).
LDHAmetacluster_144.9SP2 (directAnnotation).
LDHAtransfac_pro__M06237ZNF846 (directAnnotation).
LDHAtransfac_pro__M06464ZNF679 (directAnnotation).
LDHAmetacluster_22.34BACH2 (directAnnotation).
LDHAtaipale_tf_pairs__TEAD4_CLOCK_GGWATGNNNNNNNCACGTGN_CAP_reprCLOCK; TEAD4 (directAnnotation).
LDHAtaipale_tf_pairs__HOXB2_ELF1_SMGGAAGTMRTTA_CAPELF1; HOXB2 (directAnnotation).
LDHAmetacluster_15.4SMAD6 (directAnnotation). SMAD6 (inferredBy_Orthology).
LDHAtransfac_pro__M05711ZNF37A (directAnnotation).
LDHAtransfac_pro__M06313ZNF678 (directAnnotation).
LDHAtaipale_tf_pairs__FLI1_FOXI1_GAAAACCGAAAN_CAP_reprFLI1; FOXI1 (directAnnotation).
LDHAmetacluster_22.16BACH2 (directAnnotation).
LDHAtransfac_pro__M05916ZNF407 (directAnnotation).
LDHAtaipale_tf_pairs__MYBL1_TBX21_AGGTGTGNCSGTTR_CAP_reprMYBL1; TBX21 (directAnnotation).
LDHAkznf__ZNF45_Imbeault2017_OM_RCADEZNF45 (directAnnotation).
LDHAtransfac_pro__M06234ZNF91 (directAnnotation).
LDHAtransfac_pro__M06849ZNF528 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.
Target nameDrug nameDrug IDDrug type
LDHA"Artenimol"

DB11638

small molecule
LDHA"Copper"

DB09130

small molecule
LDHA"Etheno-NAD"

DB02483

small molecule
LDHA"NADH"

DB00157

small molecule
LDHA"Nicotinamide"

DB02701

small molecule
LDHA"Oxamic Acid"

DB03940

small molecule
LDHA"Stiripentol"

DB09118

small molecule
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1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."