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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: FAM3C

Summary for FAM3C

Gene informationGene symbol

FAM3C

Ensembl ID

ENSG00000196937

Entrez ID

10447

Gene nameFAM3 metabolism regulating signaling molecule C
SynonymsGS3876|ILEI
Gene typeprotein_coding
UniProtAcc

Q92520


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Dataset with differentially expressed gene: FAM3C

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE140440

DU145 and PC cell linesCell lineProstate cancerProstate cancerChemotherapydocetaxelNAMalignant cells0.6480392.04e-02

GSE169246_PacAteTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)Immunotherapyatezolizumab + paclitaxelpostB cells-0.4301954.76e-13

GSE139386

H3122 cell lineCell lineLung cancerEML4-ALK fusion-positive non-small cell lung cancer (NSCLC)Targeted therapyceritinibNAMalignant cells0.4821290.00e+00

GSE131984_JQ1

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1NAMalignant cells-0.3345967.49e-22

GSE131984_JQ1Pac

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + paclitaxelNAMalignant cells-0.4735594.23e-26

GSE131984_Pal

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapypalbociclibNAMalignant cells-0.2841593.44e-09

GSE108397

451Lu cell lineCell lineMelanomaMelanomaTargeted therapyPLX-4720NAMalignant cells-0.6515910.00e+00

GSE164897_VemCob

A375 cell lineCell lineMelanomaBRAFV600E-mutant melanomaTargeted therapyvemurafenib + combimetinibNAMalignant cells-0.78020.00e+00

GSE164897_VemTra

A375 cell lineCell lineMelanomaB+E2:E57RAFV600E-mutant melanomaTargeted therapyvemurafenib + trametinibNAMalignant cells-0.5741590.00e+00

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Expression of FAM3C in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to FAM3C

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating FAM3C

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
FAM3Chsa-miR-299-5p98.086NM_001040020
FAM3Chsa-miR-477597.6488NM_001040020
FAM3Chsa-miR-4699-3p97.3909NM_001040020
FAM3Chsa-let-7f-1-3p96.6089NM_001040020
FAM3Chsa-let-7a-3p96.6089NM_001040020
FAM3Chsa-miR-98-3p96.6089NM_001040020
FAM3Chsa-let-7b-3p96.6089NM_001040020
FAM3Chsa-miR-18a-5p95.9934NM_001040020
FAM3Chsa-miR-18b-5p95.9934NM_001040020
FAM3Chsa-miR-524-5p95.9257NM_001040020
FAM3Chsa-miR-520d-5p95.9257NM_001040020
FAM3Chsa-miR-302f95.2412NM_001040020
FAM3Chsa-miR-5692a95.0919NM_001040020
FAM3Chsa-miR-7154-5p94.2676NM_001040020
FAM3Chsa-miR-4735-3p94.2433NM_001040020
FAM3Chsa-miR-427693.048NM_001040020
FAM3Chsa-miR-605-5p92.64NM_001040020
FAM3Chsa-miR-4703-5p92.3466NM_001040020
FAM3Chsa-miR-366891.8882NM_001040020
FAM3Chsa-miR-46691.3803NM_001040020
FAM3Chsa-miR-4766-3p91.0728NM_001040020
FAM3Chsa-miR-365891.0715NM_001040020
FAM3Chsa-miR-3140-3p90.9857NM_001040020
FAM3Chsa-miR-426290.3796NM_001040020
FAM3Chsa-miR-21-5p90.0032NM_001040020
FAM3Chsa-miR-181d-5p89.6336NM_001040020
FAM3Chsa-miR-181b-5p89.6336NM_001040020
FAM3Chsa-miR-181c-5p89.6336NM_001040020
FAM3Chsa-miR-181a-5p89.6336NM_001040020
FAM3Chsa-miR-498-3p89.5378NM_001040020
FAM3Chsa-miR-3942-5p89.0164NM_001040020
FAM3Chsa-miR-3613-3p88.4756NM_001040020
FAM3Chsa-miR-428988.4067NM_001040020
FAM3Chsa-miR-394188.1118NM_001040020
FAM3Chsa-miR-218-5p87.0889NM_001040020
FAM3Chsa-miR-590-5p86.6521NM_001040020
FAM3Chsa-miR-95-5p85.5423NM_001040020
FAM3Chsa-miR-451185.4518NM_001040020
FAM3Chsa-miR-5196-5p85.2265NM_001040020
FAM3Chsa-miR-4747-5p85.2265NM_001040020
FAM3Chsa-miR-548ar-3p85.198NM_001040020
FAM3Chsa-miR-500a-5p84.498NM_001040020
FAM3Chsa-miR-430883.8221NM_001040020
FAM3Chsa-miR-548az-3p83.3647NM_001040020
FAM3Chsa-miR-548a-3p83.3647NM_001040020
FAM3Chsa-miR-548bc83.3647NM_001040020
FAM3Chsa-miR-548f-3p83.3647NM_001040020
FAM3Chsa-miR-548e-3p83.3647NM_001040020
FAM3Chsa-miR-892a81.5649NM_001040020
FAM3Chsa-miR-806381.3814NM_001040020
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Motifs and transcription factors (TFs) regulating FAM3C

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
FAM3Cmetacluster_191.3EHF; ELF1; ELF1; ELF1; ELF4; ELK1; ELK3; ELK3; ELK4; ELK4; ERF; ETS1; ETS2; ETV3; ETV4; ETV5; FEV; FEV; FLI1; FLI1; GABPA; GABPA; GABPA; GABPA; GABPA; GABPA; SPDEF; ZNF200 (directAnnotation). ELK1; ELK1; ELK3; ELK3; ELK4; ELK4; ETV1; ETV1; ETV4; ETV4; ETV4; ETV5; GABPA; GABPA (inferredBy_Orthology).
FAM3Cmetacluster_166.4BCLAF1; EHF; ELF1; ELF1; ELF1; ELF1; ELF1; ELF1; ELF2; ELF2; ELF4; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK3; ELK3; ELK3; ELK3; ELK4; ERG; ERG; ERG; ERG; ETS1; ETS1; ETS1; ETS1; ETS1; ETV1; ETV1; ETV1; ETV1; ETV2; ETV3; ETV4; ETV4; ETV4; ETV4; ETV4; ETV5; ETV7; FEV; FEV; FLI1; FLI1; FLI1; FLI1; GABPA; GABPA; GABPA; GABPA; GABPA; GABPA; GABPB1; GATAD1; PHF20; ZBTB25; ZBTB40 (directAnnotation). EHF; ELF1; ELF1; ELF3; ELF5; ELK3; ELK4; ERG; ETS1; ETV1; ETV2; ETV4; FLI1; GABPA; GABPA (inferredBy_Orthology).
FAM3Ctaipale_tf_pairs__FOXO1_ELK3_RCCGGAWGTKKW_CAPELK3; FOXO1 (directAnnotation).
FAM3Cmetacluster_138.2ELF1; ELF2; ELF4; ELK1; ELK1; ELK1; ELK1; ELK3; ELK4; ELK4; ELK4; ELK4; ELK4; ELK4; ELK4; ERF; ERG; ERG; ERG; ERG; ETS1; ETS1; ETS2; ETS2; ETV1; ETV1; ETV1; ETV2; ETV3; ETV4; ETV5; ETV5; FEV; FLI1; FLI1; GABPA; GABPA; KMT2B; SPDEF; SPDEF; SPDEF; ZBTB11; ZNF518A; ZNF580 (directAnnotation). ELF1; ELF2; ELF4; ELK1; ELK1; ELK3; ELK4; ERG; ETS1; ETS2; ETV1; ETV2; ETV3; ETV4; ETV5; FEV; FLI1; FLI1; GABPA; SPDEF; SPDEF (inferredBy_Orthology).
FAM3Ccisbp__M02645ETS1 (directAnnotation).
FAM3Ctaipale_tf_pairs__ETV2_RFX5_NNNTTCCGSNNNNGCAACNN_CAP_reprETV2; RFX5 (directAnnotation).
FAM3Ctaipale_tf_pairs__ELK1_EOMES_RSCGGAANNAGGYGYNA_CAP_reprELK1; EOMES (directAnnotation).
FAM3Ctaipale_tf_pairs__ERF_FOXI1_TGTTKMCGGAWRN_CAP_reprERF; FOXI1 (directAnnotation).
FAM3Chdpi__ELF2ELF2 (directAnnotation).
FAM3Cswissregulon__hs__ELK1ELK1 (directAnnotation).
FAM3Cmetacluster_183.4ETS1 (inferredBy_Orthology).
FAM3Ctaipale_tf_pairs__FOXO1_ELK1_TGTTGCCGGANNN_CAPELK1; FOXO1 (directAnnotation).
FAM3Cmetacluster_34.3EGR1; ETS1; SETDB1; SIX5; SIX5; ZNF143; ZNF76 (directAnnotation).
FAM3Ctaipale_tf_pairs__E2F1_ELK1_SGCGCNNNNNCGGAAGN_CAP_reprE2F1; ELK1 (directAnnotation).
FAM3Ctaipale_tf_pairs__ETV5_EOMES_TNRCACCGGAWN_CAPEOMES; ETV5 (directAnnotation).
FAM3Ctransfac_pro__M04862NRF1 (directAnnotation).
FAM3Cmetacluster_81.7CREB1 (directAnnotation).
FAM3Ctransfac_pro__M01298MECP2 (directAnnotation).
FAM3Cmetacluster_35.5ELF1; ELF2; ELF3; ELF3; ELK1; ELK4; ERF; ERG; ETS1; ETS1; ETS2; ETV7; ETV7; FLI1; FLI1 (directAnnotation).
FAM3Cmetacluster_174.6NFYA; NFYB; NFYB; NFYC (directAnnotation).
FAM3Ctaipale_tf_pairs__GCM1_ELF1_NRCCCRNNCGGAAGNN_CAP_reprELF1; GCM1 (directAnnotation).
FAM3Cmetacluster_55.3E2F6; EGR1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; ZBTB2; ZSCAN10 (directAnnotation). NFE2L1; NRF1; NRF1; NRF1 (inferredBy_Orthology).
FAM3Cjaspar__MA0502.2NFYB (directAnnotation).
FAM3Ctaipale_tf_pairs__ETV2_HES7_RSCGGAANNNNNNNCACGTGNN_CAP_reprETV2; HES7 (directAnnotation).
FAM3Cswissregulon__hs__ETV6ETV6 (directAnnotation).
FAM3Ctaipale_tf_pairs__ETV5_EVX1_RSCGGWAATKR_CAPETV5; EVX1 (directAnnotation).
FAM3Cdbtfbs__GMEB1_K562_ENCSR928KOR_merged_N1GMEB1 (directAnnotation).
FAM3Cdbtfbs__ZNF407_representative_N1ZNF407 (directAnnotation).
FAM3Ctransfac_pro__M12697ZNF142 (directAnnotation).
FAM3Ccisbp__M00341PAX6 (directAnnotation).
FAM3Ckznf__ZNF383_Imbeault2017_OM_RCADEZNF383 (directAnnotation).
FAM3Ckznf__ZNF730_Imbeault2017_RP_RCADEZNF730 (directAnnotation).
FAM3Cmetacluster_141.5NR3C1; THAP1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY2; YY2; ZNF597 (directAnnotation). YY1; YY1; YY1; YY2; ZFP42 (inferredBy_Orthology).
FAM3Ccisbp__M07938E2F1 (directAnnotation).
FAM3Ckznf__ZNF141_Imbeault2017_RP_RCADEZNF141 (directAnnotation).
FAM3Cmetacluster_144.8ZNF30; ZNF30 (directAnnotation).
FAM3Cjaspar__MA1122.1TFDP1 (directAnnotation).
FAM3Cmetacluster_3.11SP1; SP1; SP2; SP3; SP3; SP4 (directAnnotation).
FAM3Ctransfac_pro__M01175ZBTB7B (directAnnotation).
FAM3Cmetacluster_3.14WT1; WT1 (directAnnotation).
FAM3Ctaipale_tf_pairs__E2F1_ELK1_SGCGCNNNNNNNNNNCGGAAGN_CAP_reprE2F1; ELK1 (directAnnotation).
FAM3Ctransfac_pro__M01253CNOT3 (directAnnotation).
FAM3Ctransfac_pro__M02090E2F4 (directAnnotation).
FAM3Ckznf__ZNF90_Imbeault2017_OM_RCADEZNF90 (directAnnotation).
FAM3Cdbtfbs__ZBTB8A_HEK293_ENCSR481FEC_merged_N1ZBTB8A (directAnnotation).
FAM3Ctransfac_pro__M01303SP1 (directAnnotation).
FAM3Ckznf__ZNF846_Imbeault2017_RP_ChIP-seqZNF846 (directAnnotation).
FAM3Cmetacluster_163.2ZNF682 (directAnnotation).
FAM3Cmetacluster_7.5PLAGL1; PLAGL1 (directAnnotation).
FAM3Ckznf__ZNF548_Imbeault2017_OM_RCADEZNF548 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."