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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: ABLIM1

Summary for ABLIM1

Gene informationGene symbol

ABLIM1

Ensembl ID

ENSG00000099204

Entrez ID

3983

Gene nameactin binding LIM protein 1
SynonymsABLIM|LIMAB1|limatin
Gene typeprotein_coding
UniProtAcc

O14639


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Dataset with differentially expressed gene: ABLIM1

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE186960

Panc1 cell lineCell linePancreatic cancerPancreatic ductal adenocarcinoma (PDAC)ChemotherapygemcitabineNAMalignant cells-0.4659620.00e+00

GSE169246_PacBlood

patientsPeripheral blood mononuclear cellsBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelpreCD4+ T cells0.3218440.00e+00

GSE207422_Sin

patientsTumor tissueLung cancerEGFR/ALK mutation negative non-small cell lung cancer (NSCLC)Immunotherapysintilimab + carboplatin + (docetaxel or pemetrexed or emcitabine)postB cells-0.2811212.79e-03

GSE139386

H3122 cell lineCell lineLung cancerEML4-ALK fusion-positive non-small cell lung cancer (NSCLC)Targeted therapyceritinibNAMalignant cells-0.3994980.00e+00

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells0.2509799.22e-03

GSE115251

Kelly cell lineCell lineNeuroblastomaNeuroblastomaTargeted therapyTAE684NAMalignant cells-0.4562440.00e+00

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Expression of ABLIM1 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to ABLIM1

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating ABLIM1

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
ABLIM1hsa-miR-848599.9987NM_001003407
ABLIM1hsa-miR-6885-3p99.2069NM_001322893
ABLIM1hsa-miR-4659b-3p98.6018NM_001322893
ABLIM1hsa-miR-4659a-3p98.6018NM_001322893
ABLIM1hsa-miR-6776-5p98.544NM_001003407
ABLIM1hsa-miR-4753-3p98.4824NM_001322893
ABLIM1hsa-miR-3678-3p98.4614NM_001322893
ABLIM1hsa-miR-313898.412NM_001003407
ABLIM1hsa-miR-130a-5p97.4126NM_001322893
ABLIM1hsa-miR-7161-5p96.1615NM_001003407
ABLIM1hsa-miR-548u96.1615NM_001003407
ABLIM1hsa-miR-6809-3p95.2441NM_001322893
ABLIM1hsa-miR-2467-3p94.0487NM_001322893
ABLIM1hsa-miR-612491.0132NM_001003407
ABLIM1hsa-miR-397790.3376NM_001322893
ABLIM1hsa-miR-442290.0883NM_001003407
ABLIM1hsa-miR-6868-3p89.5967NM_001322893
ABLIM1hsa-miR-590-3p88.8119NM_001322893
ABLIM1hsa-miR-477587.8353NM_001322893
ABLIM1hsa-miR-548g-5p85.7613NM_001003407
ABLIM1hsa-miR-548x-5p85.7613NM_001003407
ABLIM1hsa-miR-548f-5p85.7613NM_001003407
ABLIM1hsa-miR-548aj-5p85.7613NM_001003407
ABLIM1hsa-miR-548aw85.598NM_001003407
ABLIM1hsa-miR-130b-5p84.119NM_001322893
ABLIM1hsa-miR-397283.7668NM_001003407
ABLIM1hsa-miR-120283.6706NM_001003407
ABLIM1hsa-miR-514b-5p83.36NM_001322893
ABLIM1hsa-miR-513c-5p83.36NM_001322893
ABLIM1hsa-miR-453182.6372NM_001322893
ABLIM1hsa-miR-450a-1-3p82.3391NM_001322893
ABLIM1hsa-miR-548e-5p80.9626NM_001003407
ABLIM1hsa-miR-313380.9086NM_001003407
ABLIM1hsa-miR-432880.6808NM_001322893
ABLIM1hsa-miR-1213180.2319NM_001322893
ABLIM1hsa-miR-129-1-3p80.1198NM_001003407
ABLIM1hsa-miR-129-2-3p80.1198NM_001003407
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Motifs and transcription factors (TFs) regulating ABLIM1

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
ABLIM1taipale_tf_pairs__E2F1_ELK1_SGCGCNNNNNNNNNNCGGAAGN_CAP_reprE2F1; ELK1 (directAnnotation).
ABLIM1hdpi__HIP2UBE2K (directAnnotation).
ABLIM1transfac_pro__M01240GTF2IRD1 (directAnnotation).
ABLIM1hdpi__ZNF304ZNF304 (directAnnotation).
ABLIM1dbtfbs__ZBTB8A_HEK293_ENCSR481FEC_merged_N1ZBTB8A (directAnnotation).
ABLIM1cisbp__M08228PAX5 (directAnnotation).
ABLIM1transfac_pro__M01088DEAF1 (inferredBy_Orthology).
ABLIM1transfac_pro__M00938E2F1 (directAnnotation).
ABLIM1kznf__ZNF100_Imbeault2017_RP_RCADEZNF100 (directAnnotation).
ABLIM1metacluster_24.1HIC1; HIC1; ZNF816; ZNF816; ZNF816; ZXDC (directAnnotation).
ABLIM1transfac_pro__M00800TFAP2A; TFAP2B; TFAP2C (directAnnotation).
ABLIM1kznf__ZNF267_Imbeault2017_RP_RCADEZNF267 (directAnnotation).
ABLIM1metacluster_15.1E2F4; E2F4; E2F4; E2F4; E2F7; ZFP69B (directAnnotation). E2F4 (inferredBy_Orthology).
ABLIM1cisbp__M00788ZFY (inferredBy_Orthology).
ABLIM1metacluster_24.3DIDO1; HINFP; ILF3; ZBTB21; ZFX; ZFX; ZNF283; ZNF37A; ZNF501; ZNF614 (directAnnotation). ZFY; ZFY (inferredBy_Orthology).
ABLIM1taipale_tf_pairs__GCM1_SPDEF_RTGNKGGCGGAWG_CAP_reprGCM1; SPDEF (directAnnotation).
ABLIM1metacluster_126.7CTCF; ZFY; ZSCAN30 (directAnnotation).
ABLIM1transfac_pro__M02090E2F4 (directAnnotation).
ABLIM1transfac_pro__M03846SMAD5 (directAnnotation).
ABLIM1metacluster_45.4E2F2 (directAnnotation).
ABLIM1transfac_pro__M00915TFAP2A; TFAP2B; TFAP2C (directAnnotation).
ABLIM1taipale_tf_pairs__TFAP2C_HES7_NNCRCGYGNNNNNNSCCNNNGGS_CAP_reprHES7; TFAP2C (directAnnotation).
ABLIM1metacluster_175.1ZNF283 (directAnnotation).
ABLIM1metacluster_197.3E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F2; E2F2; E2F2; E2F2; E2F2; E2F3; E2F3; E2F3; E2F3; E2F3; E2F3; E2F3; E2F4; E2F4; E2F4; E2F4; E2F4; E2F4; E2F4; E2F4; E2F4; E2F4; E2F5; E2F5; E2F5; E2F5; E2F6; E2F7; E2F7; E2F7; RB1; TFDP1; TFDP1; TFDP1; TFDP1; TFDP1; TFDP1; TFDP1; TFDP2; TFDP2 (directAnnotation).
ABLIM1metacluster_7.13ZFX (directAnnotation).
ABLIM1hdpi__FEZF2FEZF2 (directAnnotation).
ABLIM1cisbp__M00343PAX6 (directAnnotation).
ABLIM1transfac_public__M00189TFAP2A; TFAP2B; TFAP2C (directAnnotation).
ABLIM1taipale_tf_pairs__ETV5_HES7_CCGGAANNNNNNCACGTG_CAPETV5; HES7 (directAnnotation).
ABLIM1taipale_tf_pairs__TFAP2C_HES7_NNCRCGYGNNNNNNNSCCNNNGGS_CAP_reprHES7; TFAP2C (directAnnotation).
ABLIM1metacluster_125.2TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2D; TFAP2D; TFAP2D; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; ZNF611; ZNF611 (directAnnotation). TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E (inferredBy_Orthology).
ABLIM1transfac_pro__M01199TRIM28 (directAnnotation).
ABLIM1transfac_pro__M12694ZFP14 (directAnnotation).
ABLIM1metacluster_135.10MBD2; MBD2; MECP2; MECP2 (directAnnotation).
ABLIM1metacluster_144.5ZNF610; ZNF610; ZNF610 (directAnnotation).
ABLIM1metacluster_115.1NEUROD1; PHF1; ZBTB20; ZNF17; ZNF296; ZNF350; ZNF486; ZNF574; ZNF589; ZNF891 (directAnnotation). IRF4; IRF6; PRDM5 (inferredBy_Orthology).
ABLIM1metacluster_141.5NR3C1; THAP1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY2; YY2; ZNF597 (directAnnotation). YY1; YY1; YY1; YY2; ZFP42 (inferredBy_Orthology).
ABLIM1kznf__ZNF267_Imbeault2017_OM_RCADEZNF267 (directAnnotation).
ABLIM1cisbp__M00341PAX6 (directAnnotation).
ABLIM1kznf__ZNF90_Imbeault2017_OM_RCADEZNF90 (directAnnotation).
ABLIM1swissregulon__hs__CHD1CHD1 (directAnnotation).
ABLIM1swissregulon__hs__KLF6KLF6 (directAnnotation).
ABLIM1transfac_pro__M02898SMAD3 (directAnnotation).
ABLIM1metacluster_61.1DEAF1; DEAF1 (directAnnotation).
ABLIM1transfac_pro__M07387ZBTB7A (directAnnotation).
ABLIM1kznf__ZNF2_Imbeault2017_RP_ChIP-seqZNF2 (directAnnotation).
ABLIM1cisbp__M00775ZBTB1 (inferredBy_Orthology).
ABLIM1metacluster_144.3ZNF704; ZNF704 (directAnnotation).
ABLIM1transfac_pro__M09837ZNF449 (directAnnotation).
ABLIM1transfac_pro__M00430E2F1 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."