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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: DENND1B

Summary for DENND1B

Gene informationGene symbol

DENND1B

Ensembl ID

ENSG00000213047

Entrez ID

163486

Gene nameDENN domain containing 1B
SynonymsC1orf218|FAM31B|FLJ20054|MGC27044
Gene typeprotein_coding
UniProtAcc

Q6P3S1


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Dataset with differentially expressed gene: DENND1B

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE189460

patientsBone marrow aspirateMultiple myelomaMultiple myeloma (MM)Targeted therapybortezomib + melphalan + prednisolonepreMalignant cells0.3924930.00e+00

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Expression of DENND1B in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to DENND1B

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating DENND1B

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
DENND1Bhsa-miR-548l89.4526NM_001195215
DENND1Bhsa-miR-323a-3p89.3993NM_001195216
DENND1Bhsa-miR-548au-3p88.9654NM_001195215
DENND1Bhsa-miR-4524b-3p88.7573NM_001300858
DENND1Bhsa-miR-4649-3p88.5891NM_001195215
DENND1Bhsa-miR-4524b-5p88.5563NM_001195215
DENND1Bhsa-miR-4524a-5p88.5563NM_001195215
DENND1Bhsa-miR-314888.4698NM_001195215
DENND1Bhsa-miR-9983-3p88.4503NM_001195215
DENND1Bhsa-miR-374c-5p88.1989NM_001195216
DENND1Bhsa-miR-4762-3p88.1856NM_001195215
DENND1Bhsa-miR-548v88.0175NM_001195215
DENND1Bhsa-miR-372-5p87.9913NM_001195215
DENND1Bhsa-miR-366287.9289NM_001195216
DENND1Bhsa-miR-6888-3p87.6898NM_001195215
DENND1Bhsa-miR-568887.6809NM_001195216
DENND1Bhsa-miR-34b-5p87.4936NM_001195215
DENND1Bhsa-miR-4789-5p87.4853NM_001195215
DENND1Bhsa-miR-369-3p87.3846NM_001195216
DENND1Bhsa-miR-548ao-5p87.2801NM_001195215
DENND1Bhsa-miR-548ax87.2801NM_001195215
DENND1Bhsa-miR-469887.2118NM_001195215
DENND1Bhsa-miR-182787.0596NM_001195215
DENND1Bhsa-miR-64987.042NM_001195216
DENND1Bhsa-miR-6885-3p87.0363NM_001195216
DENND1Bhsa-miR-101-3p86.7844NM_001195216
DENND1Bhsa-miR-367186.7124NM_001195215
DENND1Bhsa-let-7b-3p86.5338NM_001195215
DENND1Bhsa-let-7a-3p86.5338NM_001195215
DENND1Bhsa-miR-98-3p86.5338NM_001195215
DENND1Bhsa-let-7f-1-3p86.5338NM_001195215
DENND1Bhsa-miR-120686.2633NM_001195216
DENND1Bhsa-miR-450985.9664NM_001195216
DENND1Bhsa-miR-449c-5p85.7496NM_001195215
DENND1Bhsa-miR-2682-5p85.6374NM_001195215
DENND1Bhsa-miR-3140-5p85.4368NM_001195216
DENND1Bhsa-miR-3194-3p85.1645NM_001300858
DENND1Bhsa-miR-205285.1204NM_001195215
DENND1Bhsa-miR-10784.9837NM_001195215
DENND1Bhsa-miR-103a-3p84.9837NM_001195215
DENND1Bhsa-miR-23b-3p84.9508NM_001195215
DENND1Bhsa-miR-23a-3p84.9508NM_001195215
DENND1Bhsa-miR-23c84.9508NM_001195215
DENND1Bhsa-miR-120884.9451NM_001195216
DENND1Bhsa-miR-190a-3p84.9101NM_001195216
DENND1Bhsa-miR-498-3p84.8035NM_001195215
DENND1Bhsa-miR-7158-3p84.7539NM_001195215
DENND1Bhsa-miR-4684-3p84.6785NM_001195215
DENND1Bhsa-miR-1250-3p84.6554NM_001195215
DENND1Bhsa-miR-340-5p84.5787NM_001195215
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Motifs and transcription factors (TFs) regulating DENND1B

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
DENND1Btransfac_pro__M02089E2F3 (directAnnotation).
DENND1Btransfac_pro__M02898SMAD3 (directAnnotation).
DENND1Bmetacluster_15.2E2F1; E2F1; E2F1; E2F1; E2F1; E2F3; E2F4; E2F4; E2F4; E2F6; E2F6; E2F6; E2F6; E2F6; E2F6; E2F6; E2F7; TFDP1; TFDP2; ZNF566; ZNF566; ZNF574 (directAnnotation). E2F3; E2F3; E2F4 (inferredBy_Orthology).
DENND1Bmetacluster_15.1E2F4; E2F4; E2F4; E2F4; E2F7; ZFP69B (directAnnotation). E2F4 (inferredBy_Orthology).
DENND1Bmetacluster_170.2KLF1; KLF10; KLF10; KLF11; KLF11; KLF11; KLF12; KLF12; KLF14; KLF15; KLF17; KLF2; KLF5; KLF7; KLF7; KLF8; MAZ; MAZ; PATZ1; SP1; SP1; SP1; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP4; SP4; SP5; SP6; SP7; SP8; SP9; ZNF281 (directAnnotation). E2F1; E2F4; KLF10; KLF13; KLF14; KLF17; KLF2; KLF7; SP1; SP1; SP3; SP4; SP5; SP6; SP7 (inferredBy_Orthology).
DENND1Btransfac_pro__M00803E2F1; E2F3; E2F4; TFDP1 (directAnnotation).
DENND1Bhdpi__HIP2UBE2K (directAnnotation).
DENND1Bhdpi__NRLNRL (directAnnotation).
DENND1Btransfac_pro__M00430E2F1 (directAnnotation).
DENND1Bhomer__GGCGGGAARN_E2F6E2F6 (directAnnotation).
DENND1Bhomer__NANTGCSGCA_Zfp57ZFP57 (directAnnotation).
DENND1Btransfac_pro__M07329SP7 (directAnnotation).
DENND1Bmetacluster_197.3E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F2; E2F2; E2F2; E2F2; E2F2; E2F3; E2F3; E2F3; E2F3; E2F3; E2F3; E2F3; E2F4; E2F4; E2F4; E2F4; E2F4; E2F4; E2F4; E2F4; E2F4; E2F4; E2F5; E2F5; E2F5; E2F5; E2F6; E2F7; E2F7; E2F7; RB1; TFDP1; TFDP1; TFDP1; TFDP1; TFDP1; TFDP1; TFDP1; TFDP2; TFDP2 (directAnnotation).
DENND1Btransfac_pro__M07397ZNF148 (directAnnotation).
DENND1Btransfac_pro__M01219SP1 (directAnnotation). SP3 (inferredBy_Orthology).
DENND1Bmetacluster_3.11SP1; SP1; SP2; SP3; SP3; SP4 (directAnnotation).
DENND1Bcisbp__M07938E2F1 (directAnnotation).
DENND1Bmetacluster_15.3E2F1; E2F6; E2F8; E2F8; TFDP1 (directAnnotation). E2F3 (inferredBy_Orthology).
DENND1Bhocomoco__EGR4_HUMAN.H11MO.0.DEGR4 (directAnnotation).
DENND1Bmetacluster_3.7SP1; SP1; SP1; SP1; SP1; SP1; SP1; SP1; SP2; SP2; SP2; SP2; SP3; SP3; SP3; SP4; SP4; SP4; SP4; SP4; SP4; SP5 (directAnnotation).
DENND1Btransfac_pro__M07436WT1 (directAnnotation).
DENND1Bmetacluster_3.14WT1; WT1 (directAnnotation).
DENND1Btransfac_pro__M01090SMAD9 (inferredBy_Orthology).
DENND1Btransfac_pro__M01837KLF11 (directAnnotation).
DENND1Btransfac_pro__M02844BCL6B (inferredBy_Orthology).
DENND1Btransfac_pro__M07310SP5 (directAnnotation).
DENND1Btaipale_cyt_meth__ZNF281_NCCCCTCCCCCN_eDBD_methZNF281 (directAnnotation).
DENND1Bmetacluster_7.5PLAGL1; PLAGL1 (directAnnotation).
DENND1Bmetacluster_195.2EGR2; KLF10; KLF10; KLF11; KLF11; KLF11; KLF13; KLF13; KLF13; KLF13; KLF13; KLF14; KLF14; KLF14; KLF14; KLF14; KLF15; KLF15; KLF16; KLF3; KLF8; KLF9; KLF9; KLF9; SP1; SP1; SP1; SP3; SP3; SP4; SP8; SP8; SP8; SP9; SP9 (directAnnotation). EGR1; KLF1; KLF12; KLF13; KLF14; KLF14; KLF14; KLF14; KLF14; KLF14; KLF16; KLF17; KLF17; KLF17; KLF17; KLF18; KLF18; KLF18; KLF18; KLF18; KLF18; KLF2; KLF2; KLF2; KLF3; KLF4; KLF5; KLF5; KLF5; KLF6; KLF7; KLF7; KLF8; KLF9; SP1; SP3; SP4; SP4; SP5; SP5; SP5; SP6; SP7; SP8; SP9 (inferredBy_Orthology).
DENND1Btransfac_pro__M04817ZBTB33 (directAnnotation).
DENND1Bjaspar__MA0748.2YY2 (directAnnotation).
DENND1Bswissregulon__hs__KLF6KLF6 (directAnnotation).
DENND1Bkznf__ZNF777_Imbeault2017_RP_ChIP-seqZNF777 (directAnnotation).
DENND1Bmetacluster_7.13ZFX (directAnnotation).
DENND1Bmetacluster_3.5KLF14; KLF15; KLF15; KLF16 (directAnnotation).
DENND1Btransfac_pro__M00716ZBTB14 (directAnnotation).
DENND1Bmetacluster_67.2ZNF501 (directAnnotation). ACAA1; E2F2; E2F2; E2F3; E2F3; FOXN4 (inferredBy_Orthology).
DENND1Bjaspar__MA1122.1TFDP1 (directAnnotation).
DENND1Bmetacluster_3.4SP1; SP2; SP2; SP3 (directAnnotation).
DENND1Bcisbp__M00968MTF2 (directAnnotation).
DENND1Bmetacluster_163.2ZNF682 (directAnnotation).
DENND1Bmetacluster_133.1ZNF304; ZNF304; ZSCAN22 (directAnnotation).
DENND1Btransfac_pro__M04916TAF1 (directAnnotation).
DENND1Bmetacluster_170.1ZNF460; ZNF460; ZNF468; ZNF468 (directAnnotation).
DENND1Btransfac_pro__M00938E2F1 (directAnnotation).
DENND1Btaipale_cyt_meth__ZNF460_NRMCGCCCCCCGN_eDBD_methZNF460 (directAnnotation).
DENND1Btransfac_pro__M02090E2F4 (directAnnotation).
DENND1Bkznf__ZNF571_Imbeault2017_OM_RCADEZNF571 (directAnnotation).
DENND1Bhocomoco__PROX1_HUMAN.H11MO.0.DPROX1 (directAnnotation).
DENND1Bswissregulon__hs__CHD1CHD1 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."