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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: CREBRF

Summary for CREBRF

Gene informationGene symbol

CREBRF

Ensembl ID

ENSG00000164463

Entrez ID

153222

Gene nameCREB3 regulatory factor
SynonymsC5orf41|LRF
Gene typeprotein_coding
UniProtAcc

Q8IUR6


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Dataset with differentially expressed gene: CREBRF

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE140440

DU145 and PC cell linesCell lineProstate cancerProstate cancerChemotherapydocetaxelNAMalignant cells1.825576.04e-04

GSE169246_PacTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelpreB cells0.3200591.57e-15

GSE153697

patientsBone marrow aspirateAcute lymphoblastic leukemiaRelapsed B-cell acute lymphoblastic leukemia (B-ALL)Immunotherapyanti-CD19 CAR-TNAMalignant cells-0.4655531.59e-25

GSE164551

patientsBone marrow aspirateMultiple myelomaRefractory multiple myeloma (MM)ImmunotherapyCAR-TNAMono/Macro0.3953522.12e-12

GSE189460

patientsBone marrow aspirateMultiple myelomaMultiple myeloma (MM)Targeted therapybortezomib + melphalan + prednisolonepreMalignant cells0.4548470.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostCD8+ T cells-0.2579921.55e-18

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostMalignant cells-0.4766570.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostNK cells-0.2544954.20e-19

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells-0.6040638.78e-31

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Expression of CREBRF in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to CREBRF

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating CREBRF

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
CREBRFhsa-miR-11181-5p93.65NM_153607
CREBRFhsa-miR-942-5p93.5948NM_153607
CREBRFhsa-miR-5579-3p93.4557NM_153607
CREBRFhsa-miR-1273h-3p93.4007NM_153607
CREBRFhsa-miR-3190-3p93.156NM_153607
CREBRFhsa-miR-545-3p93.1004NM_153607
CREBRFhsa-miR-93893.0773NM_153607
CREBRFhsa-miR-314892.9514NM_153607
CREBRFhsa-miR-891a-3p92.9323NM_153607
CREBRFhsa-miR-548e-5p92.8843NM_153607
CREBRFhsa-miR-381-3p92.8531NM_153607
CREBRFhsa-miR-612492.7435NM_153607
CREBRFhsa-miR-526a-5p92.6195NM_153607
CREBRFhsa-miR-522-5p92.6195NM_153607
CREBRFhsa-miR-518d-5p92.6195NM_153607
CREBRFhsa-miR-523-5p92.6195NM_153607
CREBRFhsa-miR-518f-5p92.6195NM_153607
CREBRFhsa-miR-518e-5p92.6195NM_153607
CREBRFhsa-miR-519a-5p92.6195NM_153607
CREBRFhsa-miR-519b-5p92.6195NM_153607
CREBRFhsa-miR-520c-5p92.6195NM_153607
CREBRFhsa-miR-519c-5p92.6195NM_153607
CREBRFhsa-miR-4777-5p92.5551NM_153607
CREBRFhsa-miR-391192.5104NM_153607
CREBRFhsa-miR-1212392.4588NM_001168394
CREBRFhsa-miR-4666a-3p92.3552NM_153607
CREBRFhsa-miR-516b-3p91.9276NM_153607
CREBRFhsa-miR-7162-5p91.9276NM_153607
CREBRFhsa-miR-516a-3p91.9276NM_153607
CREBRFhsa-miR-6501-3p91.8476NM_153607
CREBRFhsa-miR-548at-5p91.8445NM_153607
CREBRFhsa-miR-445291.7389NM_153607
CREBRFhsa-miR-569791.7056NM_153607
CREBRFhsa-miR-101-3p91.6984NM_153607
CREBRFhsa-miR-5002-5p91.5307NM_153607
CREBRFhsa-miR-477591.5064NM_153607
CREBRFhsa-miR-320290.9693NM_153607
CREBRFhsa-miR-29790.9431NM_153607
CREBRFhsa-miR-6886-3p90.8888NM_153607
CREBRFhsa-miR-340-5p90.8484NM_153607
CREBRFhsa-miR-6771-3p90.453NM_153607
CREBRFhsa-miR-3121-3p90.06NM_001168394
CREBRFhsa-miR-130589.938NM_153607
CREBRFhsa-miR-144-3p89.9284NM_153607
CREBRFhsa-miR-486-5p89.8326NM_153607
CREBRFhsa-miR-3194-3p89.7196NM_153607
CREBRFhsa-miR-54389.6142NM_153607
CREBRFhsa-miR-477189.522NM_153607
CREBRFhsa-miR-431189.1264NM_153607
CREBRFhsa-miR-548av-3p89.081NM_153607
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Motifs and transcription factors (TFs) regulating CREBRF

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
CREBRFkznf__ZNF594_Schmitges2016_RCADEZNF594 (directAnnotation).
CREBRFmetacluster_195.2EGR2; KLF10; KLF10; KLF11; KLF11; KLF11; KLF13; KLF13; KLF13; KLF13; KLF13; KLF14; KLF14; KLF14; KLF14; KLF14; KLF15; KLF15; KLF16; KLF3; KLF8; KLF9; KLF9; KLF9; SP1; SP1; SP1; SP3; SP3; SP4; SP8; SP8; SP8; SP9; SP9 (directAnnotation). EGR1; KLF1; KLF12; KLF13; KLF14; KLF14; KLF14; KLF14; KLF14; KLF14; KLF16; KLF17; KLF17; KLF17; KLF17; KLF18; KLF18; KLF18; KLF18; KLF18; KLF18; KLF2; KLF2; KLF2; KLF3; KLF4; KLF5; KLF5; KLF5; KLF6; KLF7; KLF7; KLF8; KLF9; SP1; SP3; SP4; SP4; SP5; SP5; SP5; SP6; SP7; SP8; SP9 (inferredBy_Orthology).
CREBRFhocomoco__KLF13_HUMAN.H11MO.0.DKLF13 (directAnnotation).
CREBRFtransfac_pro__M04617ZBTB7A (directAnnotation).
CREBRFmetacluster_3.5KLF14; KLF15; KLF15; KLF16 (directAnnotation).
CREBRFkznf__ZNF529_Imbeault2017_RP_ChIP-seqZNF529 (directAnnotation).
CREBRFtaipale_cyt_meth__ZNF460_NRMCGCCCCCCGN_eDBD_methZNF460 (directAnnotation).
CREBRFtaipale_cyt_meth__E2F2_NCGCGCGCGCM_eDBD_methE2F2 (directAnnotation).
CREBRFtransfac_pro__M07387ZBTB7A (directAnnotation).
CREBRFtransfac_pro__M07436WT1 (directAnnotation).
CREBRFtransfac_pro__M07461KLF1; KLF10; KLF11; KLF12; KLF13; KLF15; KLF16; KLF17; KLF2; KLF3; KLF4; KLF5; KLF6; KLF7; KLF8; KLF9 (directAnnotation).
CREBRFtransfac_pro__M00716ZBTB14 (directAnnotation).
CREBRFswissregulon__hs__CHD1CHD1 (directAnnotation).
CREBRFhdpi__HIP2UBE2K (directAnnotation).
CREBRFtaipale_tf_pairs__GCM1_SPDEF_RTGNKGGCGGAWG_CAP_reprGCM1; SPDEF (directAnnotation).
CREBRFmetacluster_170.2KLF1; KLF10; KLF10; KLF11; KLF11; KLF11; KLF12; KLF12; KLF14; KLF15; KLF17; KLF2; KLF5; KLF7; KLF7; KLF8; MAZ; MAZ; PATZ1; SP1; SP1; SP1; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP4; SP4; SP5; SP6; SP7; SP8; SP9; ZNF281 (directAnnotation). E2F1; E2F4; KLF10; KLF13; KLF14; KLF17; KLF2; KLF7; SP1; SP1; SP3; SP4; SP5; SP6; SP7 (inferredBy_Orthology).
CREBRFtransfac_pro__M04893TAF1 (directAnnotation).
CREBRFtransfac_pro__M03876ZBTB33 (directAnnotation).
CREBRFmetacluster_15.2E2F1; E2F1; E2F1; E2F1; E2F1; E2F3; E2F4; E2F4; E2F4; E2F6; E2F6; E2F6; E2F6; E2F6; E2F6; E2F6; E2F7; TFDP1; TFDP2; ZNF566; ZNF566; ZNF574 (directAnnotation). E2F3; E2F3; E2F4 (inferredBy_Orthology).
CREBRFmetacluster_133.1ZNF304; ZNF304; ZSCAN22 (directAnnotation).
CREBRFkznf__ZNF441_Imbeault2017_RP_RCADEZNF441 (directAnnotation).
CREBRFtransfac_pro__M01219SP1 (directAnnotation). SP3 (inferredBy_Orthology).
CREBRFmetacluster_3.7SP1; SP1; SP1; SP1; SP1; SP1; SP1; SP1; SP2; SP2; SP2; SP2; SP3; SP3; SP3; SP4; SP4; SP4; SP4; SP4; SP4; SP5 (directAnnotation).
CREBRFmetacluster_3.10KLF2; KLF4 (directAnnotation).
CREBRFmetacluster_163.1KLF1; KLF1; KLF1; KLF1; KLF1; KLF1; KLF1; KLF10; KLF10; KLF12; KLF12; KLF12; KLF13; KLF16; KLF17; KLF2; KLF3; KLF3; KLF3; KLF3; KLF4; KLF4; KLF4; KLF4; KLF4; KLF5; KLF5; KLF5; KLF5; KLF6; KLF6; KLF6; KLF7; KLF9; KLF9; SALL4; SP1; ZNF148; ZNF148; ZNF526 (directAnnotation). EGR4; KLF1; KLF1; KLF12; KLF12; KLF12; KLF13; KLF14; KLF14; KLF14; KLF14; KLF14; KLF14; KLF16; KLF17; KLF17; KLF17; KLF17; KLF17; KLF18; KLF18; KLF18; KLF18; KLF18; KLF18; KLF2; KLF2; KLF3; KLF4; KLF4; KLF4; KLF4; KLF4; KLF4; KLF5; KLF5; KLF5; KLF6; KLF7; KLF7; KLF8; KLF8; KLF9; SP4; SP5; SP5; SP6; SP7; SP8; SP9; ZNF526 (inferredBy_Orthology).
CREBRFtransfac_pro__M01783SP2 (directAnnotation).
CREBRFmetacluster_155.23BCL11B; ZNF711; ZNF711 (directAnnotation). ZFY (inferredBy_Orthology).
CREBRFcisbp__M00341PAX6 (directAnnotation).
CREBRFkznf__ZNF730_Imbeault2017_RP_RCADEZNF730 (directAnnotation).
CREBRFmetacluster_111.3ATF1; ATF3; CREB1; CREB1; CREB1; CREB1; CREB1; CREM; CREM; CREM; CREM; E4F1; E4F1 (directAnnotation). CREB1; CREB1; CREM; JDP2 (inferredBy_Orthology).
CREBRFtransfac_pro__M01253CNOT3 (directAnnotation).
CREBRFhomer__TWVGGTCCGC_HINFPHINFP (directAnnotation).
CREBRFmetacluster_7.13ZFX (directAnnotation).
CREBRFcisbp__M00968MTF2 (directAnnotation).
CREBRFtransfac_pro__M04817ZBTB33 (directAnnotation).
CREBRFtransfac_pro__M00803E2F1; E2F3; E2F4; TFDP1 (directAnnotation).
CREBRFtransfac_pro__M02089E2F3 (directAnnotation).
CREBRFjaspar__MA0748.2YY2 (directAnnotation).
CREBRFdbtfbs__ZBTB8A_HEK293_ENCSR481FEC_merged_N1ZBTB8A (directAnnotation).
CREBRFkznf__ZNF548_Imbeault2017_RP_RCADEZNF548 (directAnnotation).
CREBRFtaipale_tf_pairs__TFAP2C_E2F8_NNTCCCGCNNNCCNNNGGC_CAP_reprE2F8; TFAP2C (directAnnotation).
CREBRFmetacluster_135.10MBD2; MBD2; MECP2; MECP2 (directAnnotation).
CREBRFkznf__ZNF846_Imbeault2017_RP_ChIP-seqZNF846 (directAnnotation).
CREBRFtransfac_pro__M12686ZBTB10 (directAnnotation).
CREBRFkznf__ZNF383_Imbeault2017_RP_RCADEZNF383 (directAnnotation).
CREBRFdbtfbs__ZBTB10_HEK293_ENCSR004PLU_merged_N1ZBTB10 (directAnnotation).
CREBRFmetacluster_144.8ZNF30; ZNF30 (directAnnotation).
CREBRFmetacluster_23.9GLIS1; GLIS3; GLIS3; ZNF575 (directAnnotation). GLIS2; GLIS2; GLIS3; ZNF575; ZXDA; ZXDA; ZXDA; ZXDA; ZXDB; ZXDB; ZXDB; ZXDB; ZXDC; ZXDC; ZXDC; ZXDC (inferredBy_Orthology).
CREBRFmetacluster_61.1DEAF1; DEAF1 (directAnnotation).
CREBRFkznf__ZNF141_Imbeault2017_RP_RCADEZNF141 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."