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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: SYT1

Summary for SYT1

Gene informationGene symbol

SYT1

Ensembl ID

ENSG00000067715

Entrez ID

6857

Gene namesynaptotagmin 1
SynonymsP65|SVP65|SYT
Gene typeprotein_coding
UniProtAcc

P21579


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Dataset with differentially expressed gene: SYT1

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE140440

DU145 and PC cell linesCell lineProstate cancerProstate cancerChemotherapydocetaxelNAMalignant cells1.692218.97e-05

GSE186960

Panc1 cell lineCell linePancreatic cancerPancreatic ductal adenocarcinoma (PDAC)ChemotherapygemcitabineNAMalignant cells0.7529620.00e+00

GSE138267

CDXTumor tissueLung cancerSmall cell lung cancer (SCLC)ChemotherapyNANAMalignant cells-0.3604690.00e+00

GSE153697

patientsBone marrow aspirateAcute lymphoblastic leukemiaRelapsed B-cell acute lymphoblastic leukemia (B-ALL)Immunotherapyanti-CD19 CAR-TNAPhysiology B cells-0.354389.16e-05

GSE115251

Kelly cell lineCell lineNeuroblastomaNeuroblastomaTargeted therapyTAE684NAMalignant cells0.940810.00e+00

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Expression of SYT1 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to SYT1

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating SYT1

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
SYT1hsa-miR-128-3p88.5535NM_001135805
SYT1hsa-miR-216a-3p88.5535NM_001135805
SYT1hsa-miR-480188.2216NM_001135805
SYT1hsa-miR-6515-5p88.2116NM_001135805
SYT1hsa-miR-520b-5p88.0721NM_001135805
SYT1hsa-miR-519a-2-5p88.0721NM_001135805
SYT1hsa-miR-515-3p87.904NM_001135805
SYT1hsa-miR-519e-3p87.904NM_001135805
SYT1hsa-miR-33b-3p87.904NM_001135805
SYT1hsa-miR-426487.892NM_005639
SYT1hsa-miR-6715b-3p87.4165NM_005639
SYT1hsa-miR-3681-3p87.3832NM_001135805
SYT1hsa-miR-4742-5p86.4476NM_001135805
SYT1hsa-miR-196a-1-3p86.3817NM_001135805
SYT1hsa-miR-875-3p86.2994NM_005639
SYT1hsa-miR-808086.0381NM_001135805
SYT1hsa-miR-449686.0228NM_005639
SYT1hsa-miR-5692c85.8618NM_005639
SYT1hsa-miR-5692b85.8618NM_005639
SYT1hsa-miR-382-5p85.4567NM_001135805
SYT1hsa-miR-181a-2-3p85.1235NM_001135805
SYT1hsa-miR-328-3p85.04NM_001135805
SYT1hsa-miR-4690-5p84.8948NM_001135805
SYT1hsa-miR-4786-3p84.8815NM_001135805
SYT1hsa-miR-548x-3p84.3659NM_001135805
SYT1hsa-miR-548aj-3p84.3659NM_001135805
SYT1hsa-miR-3145-3p84.2267NM_005639
SYT1hsa-miR-4731-3p84.0277NM_001135805
SYT1hsa-miR-4999-3p83.9749NM_001135805
SYT1hsa-miR-446083.8629NM_005639
SYT1hsa-miR-133b83.5353NM_001135805
SYT1hsa-miR-133a-3p83.5353NM_001135805
SYT1hsa-miR-4753-3p83.4515NM_001135805
SYT1hsa-miR-1277-5p82.8612NM_001135805
SYT1hsa-miR-4677-5p82.8212NM_001135805
SYT1hsa-miR-4774-5p82.6303NM_005639
SYT1hsa-miR-6811-3p82.2637NM_005639
SYT1hsa-miR-467881.9162NM_001135805
SYT1hsa-miR-570081.6541NM_005639
SYT1hsa-miR-4684-3p81.2921NM_005639
SYT1hsa-miR-397781.2515NM_001135805
SYT1hsa-miR-9-5p81.2411NM_001135805
SYT1hsa-miR-58680.8414NM_001135805
SYT1hsa-miR-548aq-3p80.4927NM_001135805
SYT1hsa-miR-548j-3p80.4927NM_001135805
SYT1hsa-miR-548ae-3p80.4927NM_001135805
SYT1hsa-miR-548am-3p80.4927NM_001135805
SYT1hsa-miR-548ah-3p80.4927NM_001135805
SYT1hsa-miR-5011-3p80.4509NM_001135805
SYT1hsa-miR-6514-3p80.393NM_005639
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Motifs and transcription factors (TFs) regulating SYT1

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
SYT1taipale_tf_pairs__E2F1_HES7_RRCRCGYGYNNNNSGCGCSN_CAP_reprE2F1; HES7 (directAnnotation).
SYT1kznf__ZNF25_Imbeault2017_OM_MEMEZNF25 (directAnnotation).
SYT1taipale_tf_pairs__ETV5_HES7_NNCACGTGNNNNCCGGAANN_CAPETV5; HES7 (directAnnotation).
SYT1metacluster_191.3EHF; ELF1; ELF1; ELF1; ELF4; ELK1; ELK3; ELK3; ELK4; ELK4; ERF; ETS1; ETS2; ETV3; ETV4; ETV5; FEV; FEV; FLI1; FLI1; GABPA; GABPA; GABPA; GABPA; GABPA; GABPA; SPDEF; ZNF200 (directAnnotation). ELK1; ELK1; ELK3; ELK3; ELK4; ELK4; ETV1; ETV1; ETV4; ETV4; ETV4; ETV5; GABPA; GABPA (inferredBy_Orthology).
SYT1taipale_tf_pairs__HOXB2_ETV4_ACCGGAAATGAN_CAPETV4; HOXB2 (directAnnotation).
SYT1kznf__ZFP57_Imbeault2017_RP_ChIP-seqZFP57 (directAnnotation).
SYT1kznf__ZNF777_Imbeault2017_RP_ChIP-seqZNF777 (directAnnotation).
SYT1metacluster_195.2EGR2; KLF10; KLF10; KLF11; KLF11; KLF11; KLF13; KLF13; KLF13; KLF13; KLF13; KLF14; KLF14; KLF14; KLF14; KLF14; KLF15; KLF15; KLF16; KLF3; KLF8; KLF9; KLF9; KLF9; SP1; SP1; SP1; SP3; SP3; SP4; SP8; SP8; SP8; SP9; SP9 (directAnnotation). EGR1; KLF1; KLF12; KLF13; KLF14; KLF14; KLF14; KLF14; KLF14; KLF14; KLF16; KLF17; KLF17; KLF17; KLF17; KLF18; KLF18; KLF18; KLF18; KLF18; KLF18; KLF2; KLF2; KLF2; KLF3; KLF4; KLF5; KLF5; KLF5; KLF6; KLF7; KLF7; KLF8; KLF9; SP1; SP3; SP4; SP4; SP5; SP5; SP5; SP6; SP7; SP8; SP9 (inferredBy_Orthology).
SYT1metacluster_67.2ZNF501 (directAnnotation). ACAA1; E2F2; E2F2; E2F3; E2F3; FOXN4 (inferredBy_Orthology).
SYT1metacluster_3.14WT1; WT1 (directAnnotation).
SYT1cisbp__M07938E2F1 (directAnnotation).
SYT1taipale_tf_pairs__ETS2_RCCGGAAGTG_HTETS2 (directAnnotation).
SYT1transfac_pro__M05481ZNF202 (directAnnotation).
SYT1taipale_tf_pairs__MYBL1_ELF1_NMCCGGAACCGTTR_CAP_reprELF1; MYBL1 (directAnnotation).
SYT1transfac_pro__M05522ZNF341 (directAnnotation).
SYT1transfac_pro__M05298OVOL3 (directAnnotation).
SYT1metacluster_33.5MTF1 (inferredBy_Orthology).
SYT1taipale_tf_pairs__FOXO1_ETV4_RCCGGAWGTKKN_CAPETV4; FOXO1 (directAnnotation).
SYT1taipale_tf_pairs__ELF2_NATGCGGAAGTR_HTELF2 (directAnnotation).
SYT1metacluster_168.1ZSCAN16 (directAnnotation).
SYT1tfdimers__MD00295EBF1; STAT6 (directAnnotation).
SYT1kznf__ZNF594_Schmitges2016_RCADEZNF594 (directAnnotation).
SYT1transfac_pro__M04617ZBTB7A (directAnnotation).
SYT1metacluster_3.5KLF14; KLF15; KLF15; KLF16 (directAnnotation).
SYT1kznf__ZNF529_Imbeault2017_RP_ChIP-seqZNF529 (directAnnotation).
SYT1taipale_cyt_meth__ZNF460_NRMCGCCCCCCGN_eDBD_methZNF460 (directAnnotation).
SYT1taipale_cyt_meth__E2F2_NCGCGCGCGCM_eDBD_methE2F2 (directAnnotation).
SYT1transfac_pro__M07387ZBTB7A (directAnnotation).
SYT1transfac_pro__M07436WT1 (directAnnotation).
SYT1transfac_pro__M07461KLF1; KLF10; KLF11; KLF12; KLF13; KLF15; KLF16; KLF17; KLF2; KLF3; KLF4; KLF5; KLF6; KLF7; KLF8; KLF9 (directAnnotation).
SYT1transfac_pro__M00716ZBTB14 (directAnnotation).
SYT1swissregulon__hs__CHD1CHD1 (directAnnotation).
SYT1hdpi__HIP2UBE2K (directAnnotation).
SYT1taipale_tf_pairs__GCM1_SPDEF_RTGNKGGCGGAWG_CAP_reprGCM1; SPDEF (directAnnotation).
SYT1metacluster_170.2KLF1; KLF10; KLF10; KLF11; KLF11; KLF11; KLF12; KLF12; KLF14; KLF15; KLF17; KLF2; KLF5; KLF7; KLF7; KLF8; MAZ; MAZ; PATZ1; SP1; SP1; SP1; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP4; SP4; SP5; SP6; SP7; SP8; SP9; ZNF281 (directAnnotation). E2F1; E2F4; KLF10; KLF13; KLF14; KLF17; KLF2; KLF7; SP1; SP1; SP3; SP4; SP5; SP6; SP7 (inferredBy_Orthology).
SYT1transfac_pro__M04893TAF1 (directAnnotation).
SYT1transfac_pro__M03876ZBTB33 (directAnnotation).
SYT1metacluster_15.2E2F1; E2F1; E2F1; E2F1; E2F1; E2F3; E2F4; E2F4; E2F4; E2F6; E2F6; E2F6; E2F6; E2F6; E2F6; E2F6; E2F7; TFDP1; TFDP2; ZNF566; ZNF566; ZNF574 (directAnnotation). E2F3; E2F3; E2F4 (inferredBy_Orthology).
SYT1metacluster_133.1ZNF304; ZNF304; ZSCAN22 (directAnnotation).
SYT1kznf__ZNF441_Imbeault2017_RP_RCADEZNF441 (directAnnotation).
SYT1transfac_pro__M01219SP1 (directAnnotation). SP3 (inferredBy_Orthology).
SYT1metacluster_3.7SP1; SP1; SP1; SP1; SP1; SP1; SP1; SP1; SP2; SP2; SP2; SP2; SP3; SP3; SP3; SP4; SP4; SP4; SP4; SP4; SP4; SP5 (directAnnotation).
SYT1tfdimers__MD00292HLTF; POU5F1 (directAnnotation).
SYT1hdpi__PURGPURG (directAnnotation).
SYT1transfac_pro__M06827ZBTB11 (directAnnotation).
SYT1transfac_pro__M06692PRDM10 (directAnnotation).
SYT1transfac_pro__M06952BATF (directAnnotation).
SYT1metacluster_131.3ZNF436 (inferredBy_Orthology).
SYT1transfac_pro__M06959ZNF425 (directAnnotation).
SYT1transfac_pro__M06353ZNF782 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."