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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: SLC4A4

Summary for SLC4A4

Gene informationGene symbol

SLC4A4

Ensembl ID

ENSG00000080493

Entrez ID

8671

Gene namesolute carrier family 4 member 4
SynonymshhNMC|HNBC1|NBC1|NBC2|pNBC|SLC4A5
Gene typeprotein_coding
UniProtAcc

Q9Y6R1


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Dataset with differentially expressed gene: SLC4A4

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE168668

LNCaP cell lineCell lineProstate cancerProstate cancerTargeted therapyenzalutamideNAMalignant cells-0.672520.00e+00

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells-0.6168220.00e+00

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Expression of SLC4A4 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to SLC4A4

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.
Gene symbolMechanism

SLC4A4

Irregularity in Drug Uptake and Drug Efflux
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MicroRNAs (miRNA) regulating SLC4A4

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
SLC4A4hsa-miR-6779-3p90.0941NM_001098484
SLC4A4hsa-miR-4735-5p89.6993NM_003759
SLC4A4hsa-miR-651-5p89.6848NM_001134742
SLC4A4hsa-miR-370-3p89.1743NM_001098484
SLC4A4hsa-miR-6893-3p89.1743NM_001098484
SLC4A4hsa-miR-335-3p88.9747NM_001098484
SLC4A4hsa-miR-7161-5p88.8714NM_001134742
SLC4A4hsa-miR-26a-2-3p88.8157NM_003759
SLC4A4hsa-miR-26a-1-3p88.8157NM_003759
SLC4A4hsa-miR-426888.6452NM_001098484
SLC4A4hsa-miR-58788.2634NM_001098484
SLC4A4hsa-miR-26a-5p87.6408NM_003759
SLC4A4hsa-miR-26b-5p87.6408NM_003759
SLC4A4hsa-miR-548u87.5734NM_001134742
SLC4A4hsa-miR-312387.2162NM_001134742
SLC4A4hsa-miR-3065-5p87.0667NM_001134742
SLC4A4hsa-miR-431987.0275NM_001098484
SLC4A4hsa-miR-446586.9022NM_003759
SLC4A4hsa-miR-15b-5p86.832NM_001098484
SLC4A4hsa-miR-16-5p86.832NM_001098484
SLC4A4hsa-miR-195-5p86.832NM_001098484
SLC4A4hsa-miR-15a-5p86.832NM_001098484
SLC4A4hsa-miR-1277-5p85.983NM_001134742
SLC4A4hsa-miR-376b-3p85.8602NM_001098484
SLC4A4hsa-miR-376a-3p85.8602NM_001098484
SLC4A4hsa-miR-570085.0375NM_001134742
SLC4A4hsa-miR-311884.8841NM_003759
SLC4A4hsa-miR-134-5p84.8841NM_003759
SLC4A4hsa-miR-1304-5p84.7425NM_001098484
SLC4A4hsa-miR-120584.5762NM_001098484
SLC4A4hsa-miR-10394-5p84.5762NM_001098484
SLC4A4hsa-miR-477384.3966NM_001134742
SLC4A4hsa-miR-29b-2-5p84.2884NM_001098484
SLC4A4hsa-miR-383-3p84.1457NM_001098484
SLC4A4hsa-miR-511-5p84.0358NM_003759
SLC4A4hsa-miR-44883.6536NM_001098484
SLC4A4hsa-miR-217-5p83.0182NM_001098484
SLC4A4hsa-miR-582-5p82.8197NM_001098484
SLC4A4hsa-miR-6730-5p82.623NM_001134742
SLC4A4hsa-miR-6739-3p82.363NM_001098484
SLC4A4hsa-miR-4666a-3p82.3097NM_001134742
SLC4A4hsa-miR-497-5p82.2945NM_001098484
SLC4A4hsa-miR-424-5p82.2945NM_001098484
SLC4A4hsa-miR-6838-5p82.2945NM_001098484
SLC4A4hsa-miR-150-5p81.9531NM_001098484
SLC4A4hsa-miR-6822-3p81.8502NM_001134742
SLC4A4hsa-miR-5002-5p81.8455NM_001098484
SLC4A4hsa-miR-10523-5p81.6409NM_003759
SLC4A4hsa-miR-33a-3p81.4503NM_001134742
SLC4A4hsa-miR-6867-5p81.3241NM_001134742
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Motifs and transcription factors (TFs) regulating SLC4A4

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
SLC4A4metacluster_135.11NR2C2 (directAnnotation).
SLC4A4metacluster_135.10MBD2; MBD2; MECP2; MECP2 (directAnnotation).
SLC4A4tfdimers__MD00038TFAP2C (directAnnotation).
SLC4A4metacluster_144.3ZNF704; ZNF704 (directAnnotation).
SLC4A4metacluster_7.13ZFX (directAnnotation).
SLC4A4kznf__ZNF730_Imbeault2017_RP_RCADEZNF730 (directAnnotation).
SLC4A4cisbp__M00968MTF2 (directAnnotation).
SLC4A4metacluster_155.23BCL11B; ZNF711; ZNF711 (directAnnotation). ZFY (inferredBy_Orthology).
SLC4A4metacluster_160.20JUND; PRDM15 (directAnnotation).
SLC4A4cisbp__M00341PAX6 (directAnnotation).
SLC4A4metacluster_198.3ZFP64 (directAnnotation).
SLC4A4metacluster_141.5NR3C1; THAP1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY2; YY2; ZNF597 (directAnnotation). YY1; YY1; YY1; YY2; ZFP42 (inferredBy_Orthology).
SLC4A4metacluster_151.1KAT7; PML; SMAD5; TAF1; ZFP37; ZGPAT; ZNF519; ZNF519; ZNF571; ZNF770; ZNF770; ZNF770; ZSCAN22; ZSCAN22 (directAnnotation).
SLC4A4jaspar__MA0185.1DEAF1 (inferredBy_Orthology).
SLC4A4metacluster_61.1DEAF1; DEAF1 (directAnnotation).
SLC4A4cisbp__M00788ZFY (inferredBy_Orthology).
SLC4A4kznf__ZNF213_Schmitges2016_RCADEZNF213 (directAnnotation).
SLC4A4metacluster_175.1ZNF283 (directAnnotation).
SLC4A4hdpi__ZNF304ZNF304 (directAnnotation).
SLC4A4transfac_pro__M02844BCL6B (inferredBy_Orthology).
SLC4A4metacluster_125.2TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2D; TFAP2D; TFAP2D; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; ZNF611; ZNF611 (directAnnotation). TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E (inferredBy_Orthology).
SLC4A4metacluster_133.1ZNF304; ZNF304; ZSCAN22 (directAnnotation).
SLC4A4transfac_pro__M01199TRIM28 (directAnnotation).
SLC4A4kznf__ZNF682_Isakova2017_SMiLE-seqZNF682 (directAnnotation).
SLC4A4metacluster_151.2ZNF23 (directAnnotation).
SLC4A4transfac_public__M00189TFAP2A; TFAP2B; TFAP2C (directAnnotation).
SLC4A4transfac_pro__M01219SP1 (directAnnotation). SP3 (inferredBy_Orthology).
SLC4A4transfac_pro__M03806ZBTB7C (directAnnotation).
SLC4A4transfac_pro__M00915TFAP2A; TFAP2B; TFAP2C (directAnnotation).
SLC4A4kznf__ZBTB14_Schmitges2016_RCADEZBTB14 (directAnnotation).
SLC4A4taipale_tf_pairs__E2F3_HES7_NNNNGCGCSNNNNNCACGTGNN_CAPE2F3; HES7 (directAnnotation).
SLC4A4transfac_pro__M02089E2F3 (directAnnotation).
SLC4A4taipale_cyt_meth__E2F2_NCGCGCGCGCM_eDBD_methE2F2 (directAnnotation).
SLC4A4transfac_pro__M00803E2F1; E2F3; E2F4; TFDP1 (directAnnotation).
SLC4A4transfac_pro__M04817ZBTB33 (directAnnotation).
SLC4A4metacluster_143.13ZBTB7A (directAnnotation).
SLC4A4transfac_pro__M02861GATA6 (inferredBy_Orthology).
SLC4A4tfdimers__MD00483ZBTB14 (directAnnotation).
SLC4A4cisbp__M07938E2F1 (directAnnotation).
SLC4A4jaspar__MA0535.1SMAD9 (inferredBy_Orthology).
SLC4A4metacluster_15.1E2F4; E2F4; E2F4; E2F4; E2F7; ZFP69B (directAnnotation). E2F4 (inferredBy_Orthology).
SLC4A4metacluster_15.2E2F1; E2F1; E2F1; E2F1; E2F1; E2F3; E2F4; E2F4; E2F4; E2F6; E2F6; E2F6; E2F6; E2F6; E2F6; E2F6; E2F7; TFDP1; TFDP2; ZNF566; ZNF566; ZNF574 (directAnnotation). E2F3; E2F3; E2F4 (inferredBy_Orthology).
SLC4A4taipale_tf_pairs__E2F1_HES7_RRCRCGYGYNNNNSGCGCSN_CAP_reprE2F1; HES7 (directAnnotation).
SLC4A4jaspar__MA1122.1TFDP1 (directAnnotation).
SLC4A4taipale_tf_pairs__ETV5_HES7_NNCACGTGNNNNCCGGAANN_CAPETV5; HES7 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."