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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: SLC44A1

Summary for SLC44A1

Gene informationGene symbol

SLC44A1

Ensembl ID

ENSG00000070214

Entrez ID

23446

Gene namesolute carrier family 44 member 1
SynonymsCD92|CDW92|CHTL1|CTL1
Gene typeprotein_coding
UniProtAcc

Q8WWI5


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Dataset with differentially expressed gene: SLC44A1

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpreMalignant cells-0.830010.00e+00

GSE131984_JQ1

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1NAMalignant cells0.2503171.45e-11

GSE131984_JQ1Pal

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + palbociclibNAMalignant cells0.4601624.59e-32

GSE108397

451Lu cell lineCell lineMelanomaMelanomaTargeted therapyPLX-4720NAMalignant cells-0.3784280.00e+00

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Expression of SLC44A1 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to SLC44A1

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating SLC44A1

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
SLC44A1hsa-miR-58787.3861NM_080546
SLC44A1hsa-miR-392987.0903NM_001286730
SLC44A1hsa-miR-146a-3p86.9899NM_080546
SLC44A1hsa-miR-28-3p86.9456NM_001286730
SLC44A1hsa-miR-4653-5p86.6718NM_080546
SLC44A1hsa-miR-392186.6718NM_080546
SLC44A1hsa-miR-5197-5p86.4546NM_001286730
SLC44A1hsa-miR-313386.3198NM_080546
SLC44A1hsa-miR-4789-3p86.2703NM_080546
SLC44A1hsa-miR-64786.1532NM_080546
SLC44A1hsa-miR-3942-3p85.8609NM_080546
SLC44A1hsa-miR-428285.6586NM_001286730
SLC44A1hsa-miR-4666a-5p85.2701NM_080546
SLC44A1hsa-miR-432984.9047NM_001286730
SLC44A1hsa-miR-329-3p84.645NM_080546
SLC44A1hsa-miR-362-3p84.645NM_080546
SLC44A1hsa-miR-208b-5p84.5641NM_001286730
SLC44A1hsa-miR-208a-5p84.5641NM_001286730
SLC44A1hsa-miR-391984.4698NM_001286730
SLC44A1hsa-miR-4789-5p84.1113NM_080546
SLC44A1hsa-miR-539-5p83.9613NM_001286730
SLC44A1hsa-miR-364683.8663NM_080546
SLC44A1hsa-miR-6815-3p83.8317NM_080546
SLC44A1hsa-miR-1236-3p83.4582NM_001286730
SLC44A1hsa-miR-569183.3165NM_080546
SLC44A1hsa-miR-6805-3p83.3165NM_080546
SLC44A1hsa-miR-3160-5p83.0156NM_080546
SLC44A1hsa-miR-548c-3p82.772NM_080546
SLC44A1hsa-miR-544b82.3882NM_080546
SLC44A1hsa-miR-7853-5p82.2717NM_080546
SLC44A1hsa-miR-105-5p82.2717NM_080546
SLC44A1hsa-miR-561-3p82.1359NM_080546
SLC44A1hsa-miR-3613-3p82.0779NM_080546
SLC44A1hsa-miR-431281.8836NM_080546
SLC44A1hsa-miR-425181.4422NM_001286730
SLC44A1hsa-miR-7850-5p81.139NM_080546
SLC44A1hsa-miR-60780.5296NM_080546
SLC44A1hsa-miR-6742-5p80.4901NM_001286730
SLC44A1hsa-miR-568880.4662NM_080546
SLC44A1hsa-miR-337-3p80.3662NM_001286730
SLC44A1hsa-miR-589-3p80.2326NM_001286730
SLC44A1hsa-miR-548h-3p80.2224NM_001286730
SLC44A1hsa-miR-548ac80.2224NM_001286730
SLC44A1hsa-miR-548z80.2224NM_001286730
SLC44A1hsa-miR-548d-3p80.2224NM_001286730
SLC44A1hsa-miR-548bb-3p80.2224NM_001286730
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Motifs and transcription factors (TFs) regulating SLC44A1

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
SLC44A1metacluster_7.13ZFX (directAnnotation).
SLC44A1cisbp__M01863ZNF711 (inferredBy_Orthology).
SLC44A1metacluster_151.2ZNF23 (directAnnotation).
SLC44A1metacluster_170.2KLF1; KLF10; KLF10; KLF11; KLF11; KLF11; KLF12; KLF12; KLF14; KLF15; KLF17; KLF2; KLF5; KLF7; KLF7; KLF8; MAZ; MAZ; PATZ1; SP1; SP1; SP1; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP4; SP4; SP5; SP6; SP7; SP8; SP9; ZNF281 (directAnnotation). E2F1; E2F4; KLF10; KLF13; KLF14; KLF17; KLF2; KLF7; SP1; SP1; SP3; SP4; SP5; SP6; SP7 (inferredBy_Orthology).
SLC44A1transfac_pro__M05479ZNF580 (directAnnotation).
SLC44A1metacluster_155.23BCL11B; ZNF711; ZNF711 (directAnnotation). ZFY (inferredBy_Orthology).
SLC44A1kznf__ZNF783_Imbeault2017_OM_MEMEZNF783 (directAnnotation).
SLC44A1metacluster_144.3ZNF704; ZNF704 (directAnnotation).
SLC44A1hdpi__ETV4ETV4 (directAnnotation).
SLC44A1jaspar__MA0748.2YY2 (directAnnotation).
SLC44A1homer__TWVGGTCCGC_HINFPHINFP (directAnnotation).
SLC44A1metacluster_135.10MBD2; MBD2; MECP2; MECP2 (directAnnotation).
SLC44A1jaspar__MA0079.5SP1 (directAnnotation).
SLC44A1taipale_tf_pairs__GCM1_ETV1_RTRNNGGCGGAAGTN_CAPETV1; GCM1 (directAnnotation).
SLC44A1metacluster_144.8ZNF30; ZNF30 (directAnnotation).
SLC44A1metacluster_141.5NR3C1; THAP1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY2; YY2; ZNF597 (directAnnotation). YY1; YY1; YY1; YY2; ZFP42 (inferredBy_Orthology).
SLC44A1transfac_pro__M01122ZNF219 (directAnnotation).
SLC44A1taipale_cyt_meth__ZNF460_NRMCGCCCCCCGN_eDBD_methZNF460 (directAnnotation).
SLC44A1taipale_tf_pairs__GCM1_SPDEF_RTGNKGGCGGAWG_CAP_reprGCM1; SPDEF (directAnnotation).
SLC44A1dbtfbs__ZNF407_representative_N1ZNF407 (directAnnotation).
SLC44A1kznf__ZNF571_Imbeault2017_OM_RCADEZNF571 (directAnnotation).
SLC44A1taipale_tf_pairs__GCM1_ELF1_GTGCGGGCGGAAGTN_CAP_reprELF1; GCM1 (directAnnotation).
SLC44A1taipale_tf_pairs__E2F1_ELK1_SGCGCNNNNNNNNNNCGGAAGN_CAP_reprE2F1; ELK1 (directAnnotation).
SLC44A1kznf__ZNF100_Imbeault2017_RP_RCADEZNF100 (directAnnotation).
SLC44A1metacluster_151.1KAT7; PML; SMAD5; TAF1; ZFP37; ZGPAT; ZNF519; ZNF519; ZNF571; ZNF770; ZNF770; ZNF770; ZSCAN22; ZSCAN22 (directAnnotation).
SLC44A1homer__GGGGGGGG_MazMAZ (directAnnotation).
SLC44A1kznf__ZNF730_Imbeault2017_RP_RCADEZNF730 (directAnnotation).
SLC44A1taipale_tf_pairs__GCM1_ERG_RTRYGGGCGGAARKN_CAPERG; GCM1 (directAnnotation).
SLC44A1transfac_pro__M01219SP1 (directAnnotation). SP3 (inferredBy_Orthology).
SLC44A1metacluster_84.2RARA (directAnnotation).
SLC44A1metacluster_23.9GLIS1; GLIS3; GLIS3; ZNF575 (directAnnotation). GLIS2; GLIS2; GLIS3; ZNF575; ZXDA; ZXDA; ZXDA; ZXDA; ZXDB; ZXDB; ZXDB; ZXDB; ZXDC; ZXDC; ZXDC; ZXDC (inferredBy_Orthology).
SLC44A1transfac_pro__M01253CNOT3 (directAnnotation).
SLC44A1dbtfbs__ZSCAN30_HEK293_ENCSR768VNZ_merged_N1ZSCAN30 (directAnnotation).
SLC44A1metacluster_3.10KLF2; KLF4 (directAnnotation).
SLC44A1jaspar__MA1721.1ZNF93 (directAnnotation).
SLC44A1metacluster_195.2EGR2; KLF10; KLF10; KLF11; KLF11; KLF11; KLF13; KLF13; KLF13; KLF13; KLF13; KLF14; KLF14; KLF14; KLF14; KLF14; KLF15; KLF15; KLF16; KLF3; KLF8; KLF9; KLF9; KLF9; SP1; SP1; SP1; SP3; SP3; SP4; SP8; SP8; SP8; SP9; SP9 (directAnnotation). EGR1; KLF1; KLF12; KLF13; KLF14; KLF14; KLF14; KLF14; KLF14; KLF14; KLF16; KLF17; KLF17; KLF17; KLF17; KLF18; KLF18; KLF18; KLF18; KLF18; KLF18; KLF2; KLF2; KLF2; KLF3; KLF4; KLF5; KLF5; KLF5; KLF6; KLF7; KLF7; KLF8; KLF9; SP1; SP3; SP4; SP4; SP5; SP5; SP5; SP6; SP7; SP8; SP9 (inferredBy_Orthology).
SLC44A1swissregulon__hs__CHD1CHD1 (directAnnotation).
SLC44A1homer__AAGGKGRCGCAGGCA_ZNF165ZNF165 (directAnnotation).
SLC44A1taipale_tf_pairs__ETV5_HES7_NNCACGTGNNNNCCGGAANN_CAPETV5; HES7 (directAnnotation).
SLC44A1kznf__ZNF311_Imbeault2017_OM_MEMEZNF311 (directAnnotation).
SLC44A1jaspar__MA1122.1TFDP1 (directAnnotation).
SLC44A1cisbp__M00341PAX6 (directAnnotation).
SLC44A1taipale_tf_pairs__TFAP2C_E2F8_NNTCCCGCNNNCCNNNGGC_CAP_reprE2F8; TFAP2C (directAnnotation).
SLC44A1taipale_tf_pairs__GCM1_SPDEF_RTGNKGGCGGAWGNNNNNTCCGGNN_CAPGCM1; SPDEF (directAnnotation).
SLC44A1transfac_pro__M01199TRIM28 (directAnnotation).
SLC44A1metacluster_3.11SP1; SP1; SP2; SP3; SP3; SP4 (directAnnotation).
SLC44A1metacluster_35.2EGR1; ELF1; ELF1; ELF1; ELF2; ELF2; ELF3; ELF4; ELF4; ELK1; ELK3; ELK4; ERG; ETS1; ETS1; ETS2; ETV1; ETV1; ETV5; ETV5; ETV6; FLI1; FLI1; GABPA; GABPA; GABPA; GABPB1; GABPB1; GABPB1; ZBTB7A (directAnnotation). ELF2; ELF2; ERG; ERG; ETS2; FLI1; GABPA; IKZF3; SPIC (inferredBy_Orthology).
SLC44A1tfdimers__MD00151CHURC1 (directAnnotation).
SLC44A1tfdimers__MD00391KLF4 (directAnnotation).
SLC44A1metacluster_163.1KLF1; KLF1; KLF1; KLF1; KLF1; KLF1; KLF1; KLF10; KLF10; KLF12; KLF12; KLF12; KLF13; KLF16; KLF17; KLF2; KLF3; KLF3; KLF3; KLF3; KLF4; KLF4; KLF4; KLF4; KLF4; KLF5; KLF5; KLF5; KLF5; KLF6; KLF6; KLF6; KLF7; KLF9; KLF9; SALL4; SP1; ZNF148; ZNF148; ZNF526 (directAnnotation). EGR4; KLF1; KLF1; KLF12; KLF12; KLF12; KLF13; KLF14; KLF14; KLF14; KLF14; KLF14; KLF14; KLF16; KLF17; KLF17; KLF17; KLF17; KLF17; KLF18; KLF18; KLF18; KLF18; KLF18; KLF18; KLF2; KLF2; KLF3; KLF4; KLF4; KLF4; KLF4; KLF4; KLF4; KLF5; KLF5; KLF5; KLF6; KLF7; KLF7; KLF8; KLF8; KLF9; SP4; SP5; SP5; SP6; SP7; SP8; SP9; ZNF526 (inferredBy_Orthology).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."