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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target

Gene: RPS6KA3

Summary for RPS6KA3

Gene informationGene symbol

RPS6KA3

Ensembl ID

ENSG00000177189

Entrez ID

6197

Gene nameribosomal protein S6 kinase A3
SynonymsCLS|HU-3|MRX19|RSK2
Gene typeprotein_coding
UniProtAcc

P51812


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Dataset with differentially expressed gene: RPS6KA3

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE131984_JQ1Pac

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + paclitaxelNAMalignant cells-0.2865572.18e-10

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells-0.2936447.54e-14

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Expression of RPS6KA3 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to RPS6KA3

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.
Gene symbolMechanism

RPS6KA3

Unusual Activation of Pro-survival Pathway
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MicroRNAs (miRNA) regulating RPS6KA3

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
RPS6KA3hsa-miR-892c-3p86.6809NM_004586
RPS6KA3hsa-miR-4676-3p86.6809NM_004586
RPS6KA3hsa-miR-452-5p86.6809NM_004586
RPS6KA3hsa-miR-4477b86.1947NM_004586
RPS6KA3hsa-miR-6504-3p86.0303NM_004586
RPS6KA3hsa-miR-302e85.9807NM_004586
RPS6KA3hsa-miR-6824-5p85.4693NM_004586
RPS6KA3hsa-miR-46685.2793NM_004586
RPS6KA3hsa-miR-1468-3p85.2791NM_004586
RPS6KA3hsa-miR-548l85.0606NM_004586
RPS6KA3hsa-miR-548ac85.0402NM_004586
RPS6KA3hsa-miR-548bb-3p85.0402NM_004586
RPS6KA3hsa-miR-548z85.0402NM_004586
RPS6KA3hsa-miR-548h-3p85.0402NM_004586
RPS6KA3hsa-miR-548d-3p85.0402NM_004586
RPS6KA3hsa-miR-42984.7727NM_004586
RPS6KA3hsa-miR-200c-3p84.7727NM_004586
RPS6KA3hsa-miR-200b-3p84.7727NM_004586
RPS6KA3hsa-miR-204-5p84.5914NM_004586
RPS6KA3hsa-miR-211-5p84.5914NM_004586
RPS6KA3hsa-miR-520d-5p84.4664NM_004586
RPS6KA3hsa-miR-524-5p84.4664NM_004586
RPS6KA3hsa-miR-4804-3p84.2956NM_004586
RPS6KA3hsa-miR-4762-3p84.042NM_004586
RPS6KA3hsa-miR-7844-5p83.9297NM_004586
RPS6KA3hsa-miR-541-5p83.8181NM_004586
RPS6KA3hsa-miR-548t-5p83.6418NM_004586
RPS6KA3hsa-miR-548az-5p83.6418NM_004586
RPS6KA3hsa-miR-4684-5p83.4165NM_004586
RPS6KA3hsa-miR-63583.1604NM_004586
RPS6KA3hsa-miR-6774-5p83.1604NM_004586
RPS6KA3hsa-miR-6868-3p83.033NM_004586
RPS6KA3hsa-miR-3190-5p82.6437NM_004586
RPS6KA3hsa-miR-302b-3p82.2517NM_004586
RPS6KA3hsa-miR-302a-3p82.2517NM_004586
RPS6KA3hsa-miR-302c-3p82.2517NM_004586
RPS6KA3hsa-miR-302d-3p82.2517NM_004586
RPS6KA3hsa-miR-4667-3p82.0617NM_004586
RPS6KA3hsa-miR-57781.8673NM_004586
RPS6KA3hsa-miR-410-3p81.7429NM_004586
RPS6KA3hsa-miR-520a-3p81.6694NM_004586
RPS6KA3hsa-miR-373-3p81.6694NM_004586
RPS6KA3hsa-miR-520e-3p81.6694NM_004586
RPS6KA3hsa-miR-520d-3p81.6694NM_004586
RPS6KA3hsa-miR-520b-3p81.6694NM_004586
RPS6KA3hsa-miR-520c-3p81.6694NM_004586
RPS6KA3hsa-miR-372-3p81.6694NM_004586
RPS6KA3hsa-miR-205-5p81.2384NM_004586
RPS6KA3hsa-miR-4724-3p81.1804NM_004586
RPS6KA3hsa-miR-6758-5p80.8629NM_004586
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Motifs and transcription factors (TFs) regulating RPS6KA3

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
RPS6KA3metacluster_135.11NR2C2 (directAnnotation).
RPS6KA3metacluster_135.10MBD2; MBD2; MECP2; MECP2 (directAnnotation).
RPS6KA3metacluster_144.3ZNF704; ZNF704 (directAnnotation).
RPS6KA3metacluster_7.13ZFX (directAnnotation).
RPS6KA3kznf__ZNF730_Imbeault2017_RP_RCADEZNF730 (directAnnotation).
RPS6KA3cisbp__M00968MTF2 (directAnnotation).
RPS6KA3metacluster_155.23BCL11B; ZNF711; ZNF711 (directAnnotation). ZFY (inferredBy_Orthology).
RPS6KA3metacluster_160.20JUND; PRDM15 (directAnnotation).
RPS6KA3cisbp__M00341PAX6 (directAnnotation).
RPS6KA3metacluster_198.3ZFP64 (directAnnotation).
RPS6KA3metacluster_141.5NR3C1; THAP1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY2; YY2; ZNF597 (directAnnotation). YY1; YY1; YY1; YY2; ZFP42 (inferredBy_Orthology).
RPS6KA3metacluster_151.1KAT7; PML; SMAD5; TAF1; ZFP37; ZGPAT; ZNF519; ZNF519; ZNF571; ZNF770; ZNF770; ZNF770; ZSCAN22; ZSCAN22 (directAnnotation).
RPS6KA3jaspar__MA0185.1DEAF1 (inferredBy_Orthology).
RPS6KA3metacluster_61.1DEAF1; DEAF1 (directAnnotation).
RPS6KA3cisbp__M00788ZFY (inferredBy_Orthology).
RPS6KA3kznf__ZNF213_Schmitges2016_RCADEZNF213 (directAnnotation).
RPS6KA3metacluster_175.1ZNF283 (directAnnotation).
RPS6KA3hdpi__ZNF304ZNF304 (directAnnotation).
RPS6KA3transfac_pro__M02844BCL6B (inferredBy_Orthology).
RPS6KA3metacluster_125.2TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2D; TFAP2D; TFAP2D; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; ZNF611; ZNF611 (directAnnotation). TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E (inferredBy_Orthology).
RPS6KA3metacluster_133.1ZNF304; ZNF304; ZSCAN22 (directAnnotation).
RPS6KA3transfac_pro__M01199TRIM28 (directAnnotation).
RPS6KA3kznf__ZNF682_Isakova2017_SMiLE-seqZNF682 (directAnnotation).
RPS6KA3metacluster_151.2ZNF23 (directAnnotation).
RPS6KA3transfac_public__M00189TFAP2A; TFAP2B; TFAP2C (directAnnotation).
RPS6KA3transfac_pro__M01219SP1 (directAnnotation). SP3 (inferredBy_Orthology).
RPS6KA3transfac_pro__M03806ZBTB7C (directAnnotation).
RPS6KA3transfac_pro__M00915TFAP2A; TFAP2B; TFAP2C (directAnnotation).
RPS6KA3taipale_tf_pairs__ETS2_RCCGGAAGTG_HTETS2 (directAnnotation).
RPS6KA3metacluster_191.3EHF; ELF1; ELF1; ELF1; ELF4; ELK1; ELK3; ELK3; ELK4; ELK4; ERF; ETS1; ETS2; ETV3; ETV4; ETV5; FEV; FEV; FLI1; FLI1; GABPA; GABPA; GABPA; GABPA; GABPA; GABPA; SPDEF; ZNF200 (directAnnotation). ELK1; ELK1; ELK3; ELK3; ELK4; ELK4; ETV1; ETV1; ETV4; ETV4; ETV4; ETV5; GABPA; GABPA (inferredBy_Orthology).
RPS6KA3metacluster_166.4BCLAF1; EHF; ELF1; ELF1; ELF1; ELF1; ELF1; ELF1; ELF2; ELF2; ELF4; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK3; ELK3; ELK3; ELK3; ELK4; ERG; ERG; ERG; ERG; ETS1; ETS1; ETS1; ETS1; ETS1; ETV1; ETV1; ETV1; ETV1; ETV2; ETV3; ETV4; ETV4; ETV4; ETV4; ETV4; ETV5; ETV7; FEV; FEV; FLI1; FLI1; FLI1; FLI1; GABPA; GABPA; GABPA; GABPA; GABPA; GABPA; GABPB1; GATAD1; PHF20; ZBTB25; ZBTB40 (directAnnotation). EHF; ELF1; ELF1; ELF3; ELF5; ELK3; ELK4; ERG; ETS1; ETV1; ETV2; ETV4; FLI1; GABPA; GABPA (inferredBy_Orthology).
RPS6KA3taipale_tf_pairs__FOXO1_ELK3_RCCGGAWGTKKW_CAPELK3; FOXO1 (directAnnotation).
RPS6KA3taipale_tf_pairs__ETV5_HOXA2_RSCGGWAATKR_CAPETV5; HOXA2 (directAnnotation).
RPS6KA3transfac_pro__M04826EP300 (directAnnotation).
RPS6KA3taipale_tf_pairs__ELK1_HOXA1_RCCGGAAGTAATTA_HTELK1; HOXA1 (directAnnotation).
RPS6KA3metacluster_138.2ELF1; ELF2; ELF4; ELK1; ELK1; ELK1; ELK1; ELK3; ELK4; ELK4; ELK4; ELK4; ELK4; ELK4; ELK4; ERF; ERG; ERG; ERG; ERG; ETS1; ETS1; ETS2; ETS2; ETV1; ETV1; ETV1; ETV2; ETV3; ETV4; ETV5; ETV5; FEV; FLI1; FLI1; GABPA; GABPA; KMT2B; SPDEF; SPDEF; SPDEF; ZBTB11; ZNF518A; ZNF580 (directAnnotation). ELF1; ELF2; ELF4; ELK1; ELK1; ELK3; ELK4; ERG; ETS1; ETS2; ETV1; ETV2; ETV3; ETV4; ETV5; FEV; FLI1; FLI1; GABPA; SPDEF; SPDEF (inferredBy_Orthology).
RPS6KA3taipale_tf_pairs__ELF2_NATGCGGAAGTR_HTELF2 (directAnnotation).
RPS6KA3jaspar__MA1708.1ETV7 (directAnnotation).
RPS6KA3taipale_tf_pairs__ELK1_EOMES_RSCGGAANNAGGYGYNA_CAP_reprELK1; EOMES (directAnnotation).
RPS6KA3hdpi__TP73TP73 (directAnnotation).
RPS6KA3hdpi__ELF2ELF2 (directAnnotation).
RPS6KA3taipale_tf_pairs__FOXO1_ELK1_TGTTGCCGGANNN_CAPELK1; FOXO1 (directAnnotation).
RPS6KA3taipale_tf_pairs__ETV5_EOMES_TNRCACCGGAWN_CAPEOMES; ETV5 (directAnnotation).
RPS6KA3metacluster_183.4ETS1 (inferredBy_Orthology).
RPS6KA3metacluster_81.7CREB1 (directAnnotation).
RPS6KA3transfac_pro__M01298MECP2 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.
Target nameDrug nameDrug IDDrug type
RPS6KA3"Acetylsalicylic acid"

DB00945

small molecule
RPS6KA3"Fostamatinib"

DB12010

small molecule
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1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."