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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: RAP2C

Summary for RAP2C

Gene informationGene symbol

RAP2C

Ensembl ID

ENSG00000123728

Entrez ID

57826

Gene nameRAP2C, member of RAS oncogene family
SynonymsDKFZp313B211
Gene typeprotein_coding
UniProtAcc

NA


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Dataset with differentially expressed gene: RAP2C

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE131984_JQ1Pac

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + paclitaxelNAMalignant cells-0.2547151.36e-10

GSE131984_JQ1Pal

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + palbociclibNAMalignant cells-0.2620691.01e-16

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Expression of RAP2C in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to RAP2C

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating RAP2C

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
RAP2Chsa-miR-106a-5p92.3686NM_001271186
RAP2Chsa-miR-20b-5p92.3686NM_001271186
RAP2Chsa-miR-93-5p92.3686NM_001271186
RAP2Chsa-miR-519d-3p92.3686NM_001271186
RAP2Chsa-miR-4772-3p92.0259NM_001271186
RAP2Chsa-miR-366292.019NM_001271186
RAP2Chsa-miR-10397-3p91.4516NM_001271186
RAP2Chsa-miR-391091.0372NM_001271186
RAP2Chsa-miR-468290.8603NM_001271186
RAP2Chsa-miR-60090.6288NM_001271186
RAP2Chsa-miR-519b-3p90.5365NM_001271186
RAP2Chsa-miR-519c-3p90.5365NM_001271186
RAP2Chsa-miR-519a-3p90.5365NM_001271186
RAP2Chsa-miR-331-5p90.2486NM_001271186
RAP2Chsa-miR-144-3p89.9071NM_001271186
RAP2Chsa-miR-4738-3p89.7388NM_001271186
RAP2Chsa-miR-3059-5p89.4897NM_001271186
RAP2Chsa-miR-467288.991NM_001271186
RAP2Chsa-miR-6818-3p88.8969NM_001271186
RAP2Chsa-miR-548c-3p88.8581NM_001271186
RAP2Chsa-miR-316988.7569NM_001271186
RAP2Chsa-miR-6780a-3p88.6742NM_001271186
RAP2Chsa-miR-7158-5p88.2843NM_001271186
RAP2Chsa-miR-200a-3p88.136NM_001271186
RAP2Chsa-miR-141-3p88.136NM_001271186
RAP2Chsa-miR-452888.0688NM_001271186
RAP2Chsa-miR-137-3p87.3279NM_001271186
RAP2Chsa-miR-217-5p87.0634NM_001271186
RAP2Chsa-miR-314887.0435NM_001271186
RAP2Chsa-miR-7856-5p86.9672NM_001271186
RAP2Chsa-miR-3184-3p86.9569NM_001271186
RAP2Chsa-miR-1212086.851NM_001271186
RAP2Chsa-miR-544a86.7709NM_001271186
RAP2Chsa-miR-3613-3p86.4428NM_001271186
RAP2Chsa-miR-24-3p86.3464NM_001271186
RAP2Chsa-miR-548at-5p86.0685NM_001271186
RAP2Chsa-miR-125685.8914NM_001271186
RAP2Chsa-miR-105-5p85.8812NM_001271186
RAP2Chsa-miR-7853-5p85.8812NM_001271186
RAP2Chsa-miR-445285.3893NM_001271186
RAP2Chsa-miR-468685.2802NM_001271186
RAP2Chsa-miR-133a-3p85.2097NM_001271186
RAP2Chsa-miR-133b85.2097NM_001271186
RAP2Chsa-miR-7160-5p85.0979NM_001271186
RAP2Chsa-miR-367185.035NM_001271186
RAP2Chsa-miR-4666a-3p84.9508NM_001271186
RAP2Chsa-miR-449384.8619NM_001271186
RAP2Chsa-miR-590-3p84.7944NM_001271186
RAP2Chsa-miR-7153-3p84.5551NM_001271186
RAP2Chsa-miR-1213684.4634NM_001271186
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Motifs and transcription factors (TFs) regulating RAP2C

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
RAP2Ctaipale_tf_pairs__ETS2_RCCGGAAGTG_HTETS2 (directAnnotation).
RAP2Cmetacluster_191.3EHF; ELF1; ELF1; ELF1; ELF4; ELK1; ELK3; ELK3; ELK4; ELK4; ERF; ETS1; ETS2; ETV3; ETV4; ETV5; FEV; FEV; FLI1; FLI1; GABPA; GABPA; GABPA; GABPA; GABPA; GABPA; SPDEF; ZNF200 (directAnnotation). ELK1; ELK1; ELK3; ELK3; ELK4; ELK4; ETV1; ETV1; ETV4; ETV4; ETV4; ETV5; GABPA; GABPA (inferredBy_Orthology).
RAP2Cmetacluster_166.4BCLAF1; EHF; ELF1; ELF1; ELF1; ELF1; ELF1; ELF1; ELF2; ELF2; ELF4; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK3; ELK3; ELK3; ELK3; ELK4; ERG; ERG; ERG; ERG; ETS1; ETS1; ETS1; ETS1; ETS1; ETV1; ETV1; ETV1; ETV1; ETV2; ETV3; ETV4; ETV4; ETV4; ETV4; ETV4; ETV5; ETV7; FEV; FEV; FLI1; FLI1; FLI1; FLI1; GABPA; GABPA; GABPA; GABPA; GABPA; GABPA; GABPB1; GATAD1; PHF20; ZBTB25; ZBTB40 (directAnnotation). EHF; ELF1; ELF1; ELF3; ELF5; ELK3; ELK4; ERG; ETS1; ETV1; ETV2; ETV4; FLI1; GABPA; GABPA (inferredBy_Orthology).
RAP2Cmetacluster_191.2ELK4; NR2C2; NR2C2; NR2C2; NR2C2 (directAnnotation). GABPA (inferredBy_Orthology).
RAP2Ctaipale_tf_pairs__FOXO1_ELK3_RCCGGAWGTKKW_CAPELK3; FOXO1 (directAnnotation).
RAP2Ctaipale_tf_pairs__ETV5_HOXA2_RSCGGWAATKR_CAPETV5; HOXA2 (directAnnotation).
RAP2Cjaspar__MA1483.2ELF2 (directAnnotation).
RAP2Cmetacluster_166.2ELK4; ETS1; ETS1; ETV1; ETV3; ETV4; ETV5; ETV7 (directAnnotation). GABPA (inferredBy_Orthology).
RAP2Ctransfac_pro__M04826EP300 (directAnnotation).
RAP2Ctaipale_tf_pairs__ELK1_HOXA1_RCCGGAAGTAATTA_HTELK1; HOXA1 (directAnnotation).
RAP2Cmetacluster_138.2ELF1; ELF2; ELF4; ELK1; ELK1; ELK1; ELK1; ELK3; ELK4; ELK4; ELK4; ELK4; ELK4; ELK4; ELK4; ERF; ERG; ERG; ERG; ERG; ETS1; ETS1; ETS2; ETS2; ETV1; ETV1; ETV1; ETV2; ETV3; ETV4; ETV5; ETV5; FEV; FLI1; FLI1; GABPA; GABPA; KMT2B; SPDEF; SPDEF; SPDEF; ZBTB11; ZNF518A; ZNF580 (directAnnotation). ELF1; ELF2; ELF4; ELK1; ELK1; ELK3; ELK4; ERG; ETS1; ETS2; ETV1; ETV2; ETV3; ETV4; ETV5; FEV; FLI1; FLI1; GABPA; SPDEF; SPDEF (inferredBy_Orthology).
RAP2Cswissregulon__hs__ELF2ELF2 (directAnnotation).
RAP2Ctaipale_tf_pairs__ELK1_EOMES_TNRCACCGGAAGN_CAPELK1; EOMES (directAnnotation).
RAP2Chdpi__ETV4ETV4 (directAnnotation).
RAP2Ccisbp__M02645ETS1 (directAnnotation).
RAP2Ctaipale_tf_pairs__ETV5_EVX1_RSCGGWAATKR_CAPETV5; EVX1 (directAnnotation).
RAP2Ctaipale_tf_pairs__ELK1_TBX21_TNRCACCGGAAGNN_CAP_reprELK1; TBX21 (directAnnotation).
RAP2Ccisbp__M08198ELF1 (directAnnotation).
RAP2Ctaipale_tf_pairs__ERF_FOXI1_RSCGGATGTTKWN_CAP_reprERF; FOXI1 (directAnnotation).
RAP2Ctaipale_tf_pairs__ETV2_RFX5_NNNTTCCGSNNNNGCAACNN_CAP_reprETV2; RFX5 (directAnnotation).
RAP2Cjaspar__MA1708.1ETV7 (directAnnotation).
RAP2Ctaipale_tf_pairs__ETV2_FOXO6_RCCGGATGTTKWN_CAPETV2; FOXO6 (directAnnotation).
RAP2Ctaipale_cyt_meth__ZNF385D_NCGTCGCGACGN_eDBD_methZNF385D (directAnnotation).
RAP2Ctaipale_tf_pairs__FOXO1_ETV4_RCCGGAWGTKKN_CAPETV4; FOXO1 (directAnnotation).
RAP2Chdpi__TP73TP73 (directAnnotation).
RAP2Chdpi__ELF2ELF2 (directAnnotation).
RAP2Cswissregulon__hs__ELK1ELK1 (directAnnotation).
RAP2Ctaipale_tf_pairs__ETV2_DRGX_RSCGGAWRYATTA_CAP_reprDRGX; ETV2 (directAnnotation).
RAP2Cmetacluster_183.4ETS1 (inferredBy_Orthology).
RAP2Ctransfac_pro__M01298MECP2 (directAnnotation).
RAP2Ctaipale_tf_pairs__HOXB2_ELK3_RSCGGAAGTMRTTA_CAPELK3; HOXB2 (directAnnotation).
RAP2Cmetacluster_35.5ELF1; ELF2; ELF3; ELF3; ELK1; ELK4; ERF; ERG; ETS1; ETS1; ETS2; ETV7; ETV7; FLI1; FLI1 (directAnnotation).
RAP2Chdpi__FLI1FLI1 (directAnnotation).
RAP2Ctaipale_tf_pairs__HOXB2_ETV4_ACCGGAAATGAN_CAPETV4; HOXB2 (directAnnotation).
RAP2Ctransfac_pro__M04862NRF1 (directAnnotation).
RAP2Ctransfac_pro__M00492STAT1 (directAnnotation).
RAP2Ctransfac_pro__M04848TAF1 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."