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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: PSD3

Summary for PSD3

Gene informationGene symbol

PSD3

Ensembl ID

ENSG00000156011

Entrez ID

23362

Gene namepleckstrin and Sec7 domain containing 3
SynonymsDKFZp761K1423|EFA6D|EFA6R|HCA67|KIAA0942
Gene typeprotein_coding
UniProtAcc

Q9NYI0


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Dataset with differentially expressed gene: PSD3

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE140440

DU145 and PC cell linesCell lineProstate cancerProstate cancerChemotherapydocetaxelNAMalignant cells1.168728.32e-06

GSE139386

H3122 cell lineCell lineLung cancerEML4-ALK fusion-positive non-small cell lung cancer (NSCLC)Targeted therapyceritinibNAMalignant cells0.3503030.00e+00

GSE168668

LNCaP cell lineCell lineProstate cancerProstate cancerTargeted therapyenzalutamideNAMalignant cells-0.4116480.00e+00

GSE108397

451Lu cell lineCell lineMelanomaMelanomaTargeted therapyPLX-4720NAMalignant cells-0.3924560.00e+00

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells-0.4605460.00e+00

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Expression of PSD3 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to PSD3

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating PSD3

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
PSD3hsa-miR-561-3p94.0566NM_206909
PSD3hsa-miR-5692a93.8198NM_015310
PSD3hsa-miR-848593.7936NM_206909
PSD3hsa-miR-797693.4252NM_015310
PSD3hsa-miR-302e93.2271NM_206909
PSD3hsa-miR-498-5p92.9924NM_015310
PSD3hsa-miR-1250-3p92.9879NM_206909
PSD3hsa-miR-493-5p92.9845NM_206909
PSD3hsa-miR-18b-5p92.9247NM_015310
PSD3hsa-miR-4735-3p92.9247NM_015310
PSD3hsa-miR-18a-5p92.9247NM_015310
PSD3hsa-miR-129-5p92.8806NM_206909
PSD3hsa-miR-513b-5p92.5068NM_206909
PSD3hsa-miR-5571-5p92.3854NM_015310
PSD3hsa-miR-9983-3p92.3456NM_206909
PSD3hsa-miR-361891.7048NM_015310
PSD3hsa-miR-1910-5p91.6322NM_206909
PSD3hsa-miR-368691.6077NM_206909
PSD3hsa-miR-330-3p91.3362NM_206909
PSD3hsa-miR-627-3p91.2488NM_015310
PSD3hsa-miR-205-5p91.2372NM_015310
PSD3hsa-miR-335-5p90.8637NM_206909
PSD3hsa-miR-302b-5p90.851NM_206909
PSD3hsa-miR-302d-5p90.851NM_206909
PSD3hsa-miR-203a-3p90.8489NM_206909
PSD3hsa-miR-5195-3p90.8243NM_015310
PSD3hsa-miR-129790.7977NM_015310
PSD3hsa-miR-9851-3p90.5303NM_015310
PSD3hsa-miR-797790.2293NM_015310
PSD3hsa-miR-6768-5p90.0471NM_015310
PSD3hsa-miR-6833-3p89.8209NM_015310
PSD3hsa-miR-607489.6083NM_206909
PSD3hsa-miR-4768-5p89.5855NM_015310
PSD3hsa-miR-95-5p89.2303NM_015310
PSD3hsa-miR-316389.1531NM_015310
PSD3hsa-miR-3158-5p89.095NM_206909
PSD3hsa-miR-469888.9976NM_015310
PSD3hsa-miR-6837-3p88.7343NM_015310
PSD3hsa-miR-6887-3p88.6946NM_206909
PSD3hsa-miR-432888.4391NM_206909
PSD3hsa-miR-214-5p88.1348NM_206909
PSD3hsa-miR-126488.002NM_015310
PSD3hsa-miR-7159-5p87.9138NM_206909
PSD3hsa-miR-548at-5p87.8855NM_206909
PSD3hsa-miR-450b-5p87.822NM_206909
PSD3hsa-miR-1213687.6547NM_206909
PSD3hsa-miR-118387.6382NM_206909
PSD3hsa-miR-6793-3p87.5962NM_206909
PSD3hsa-miR-186-5p87.5958NM_015310
PSD3hsa-miR-366287.5392NM_206909
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Motifs and transcription factors (TFs) regulating PSD3

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
PSD3taipale_tf_pairs__ETS2_RCCGGAAGTG_HTETS2 (directAnnotation).
PSD3metacluster_151.2ZNF23 (directAnnotation).
PSD3metacluster_155.23BCL11B; ZNF711; ZNF711 (directAnnotation). ZFY (inferredBy_Orthology).
PSD3kznf__ZNF783_Imbeault2017_OM_MEMEZNF783 (directAnnotation).
PSD3metacluster_144.3ZNF704; ZNF704 (directAnnotation).
PSD3metacluster_135.10MBD2; MBD2; MECP2; MECP2 (directAnnotation).
PSD3taipale_tf_pairs__HOXB2_ETV4_ACCGGAAATGAN_CAPETV4; HOXB2 (directAnnotation).
PSD3metacluster_52.11ZNF184 (directAnnotation).
PSD3taipale_tf_pairs__GCM1_ELK1_RTGCGGGCGGAAGTN_CAP_2ELK1; GCM1 (directAnnotation).
PSD3kznf__ZBTB14_Schmitges2016_RCADEZBTB14 (directAnnotation).
PSD3taipale_cyt_meth__E2F2_NCGCGCGCGCM_eDBD_methE2F2 (directAnnotation).
PSD3transfac_pro__M07387ZBTB7A (directAnnotation).
PSD3transfac_pro__M00716ZBTB14 (directAnnotation).
PSD3transfac_pro__M03876ZBTB33 (directAnnotation).
PSD3metacluster_135.11NR2C2 (directAnnotation).
PSD3cisbp__M00968MTF2 (directAnnotation).
PSD3cisbp__M00341PAX6 (directAnnotation).
PSD3metacluster_198.3ZFP64 (directAnnotation).
PSD3metacluster_141.5NR3C1; THAP1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY2; YY2; ZNF597 (directAnnotation). YY1; YY1; YY1; YY2; ZFP42 (inferredBy_Orthology).
PSD3metacluster_151.1KAT7; PML; SMAD5; TAF1; ZFP37; ZGPAT; ZNF519; ZNF519; ZNF571; ZNF770; ZNF770; ZNF770; ZSCAN22; ZSCAN22 (directAnnotation).
PSD3hdpi__ZNF304ZNF304 (directAnnotation).
PSD3metacluster_125.2TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2D; TFAP2D; TFAP2D; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; ZNF611; ZNF611 (directAnnotation). TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E (inferredBy_Orthology).
PSD3transfac_pro__M01199TRIM28 (directAnnotation).
PSD3transfac_public__M00189TFAP2A; TFAP2B; TFAP2C (directAnnotation).
PSD3transfac_pro__M03806ZBTB7C (directAnnotation).
PSD3transfac_pro__M00915TFAP2A; TFAP2B; TFAP2C (directAnnotation).
PSD3taipale_tf_pairs__E2F3_HES7_NNNNGCGCSNNNNNCACGTGNN_CAPE2F3; HES7 (directAnnotation).
PSD3transfac_pro__M02089E2F3 (directAnnotation).
PSD3transfac_pro__M04817ZBTB33 (directAnnotation).
PSD3transfac_pro__M02861GATA6 (inferredBy_Orthology).
PSD3tfdimers__MD00483ZBTB14 (directAnnotation).
PSD3cisbp__M07938E2F1 (directAnnotation).
PSD3taipale_tf_pairs__E2F1_HES7_RRCRCGYGYNNNNSGCGCSN_CAP_reprE2F1; HES7 (directAnnotation).
PSD3taipale_tf_pairs__ETV5_HES7_NNCACGTGNNNNCCGGAANN_CAPETV5; HES7 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."