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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target

Gene: PPP3CA

Summary for PPP3CA

Gene informationGene symbol

PPP3CA

Ensembl ID

ENSG00000138814

Entrez ID

5530

Gene nameprotein phosphatase 3 catalytic subunit alpha
SynonymsCALN|CALNA|CNA1|PPP2B
Gene typeprotein_coding
UniProtAcc

Q08209


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Dataset with differentially expressed gene: PPP3CA

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE169246_PacBlood

patientsPeripheral blood mononuclear cellsBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelpreB cells0.2593871.49e-41

GSE169246_PacTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelpreB cells0.278166.67e-16

GSE139386

H3122 cell lineCell lineLung cancerEML4-ALK fusion-positive non-small cell lung cancer (NSCLC)Targeted therapyceritinibNAMalignant cells-0.414090.00e+00

GSE168668

LNCaP cell lineCell lineProstate cancerProstate cancerTargeted therapyenzalutamideNAMalignant cells-0.800130.00e+00

GSE108397

451Lu cell lineCell lineMelanomaMelanomaTargeted therapyPLX-4720NAMalignant cells-0.4028410.00e+00

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells-0.5058191.90e-28

GSE164897_VemTra

A375 cell lineCell lineMelanomaB+E2:E57RAFV600E-mutant melanomaTargeted therapyvemurafenib + trametinibNAMalignant cells0.6359030.00e+00

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Expression of PPP3CA in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to PPP3CA

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.
Gene symbolMechanism

PPP3CA

Unusual Activation of Pro-survival Pathway
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MicroRNAs (miRNA) regulating PPP3CA

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
PPP3CAhsa-miR-366288.3754NM_000944
PPP3CAhsa-miR-7849-3p88.3618NM_001130691
PPP3CAhsa-miR-4652-3p88.1236NM_001130691
PPP3CAhsa-miR-466088.0538NM_000944
PPP3CAhsa-miR-891a-3p87.9357NM_000944
PPP3CAhsa-miR-548aj-3p87.5211NM_000944
PPP3CAhsa-miR-548x-3p87.5211NM_000944
PPP3CAhsa-miR-7159-3p87.4159NM_001130691
PPP3CAhsa-miR-513a-3p87.1513NM_000944
PPP3CAhsa-miR-3606-3p87.1513NM_000944
PPP3CAhsa-miR-513c-3p87.1513NM_000944
PPP3CAhsa-miR-806586.7962NM_000944
PPP3CAhsa-miR-445786.718NM_000944
PPP3CAhsa-miR-548ah-3p86.4744NM_000944
PPP3CAhsa-miR-548j-3p86.4744NM_000944
PPP3CAhsa-miR-548aq-3p86.4744NM_000944
PPP3CAhsa-miR-548am-3p86.4744NM_000944
PPP3CAhsa-miR-548ae-3p86.4744NM_000944
PPP3CAhsa-miR-477586.2708NM_001130691
PPP3CAhsa-miR-806486.2475NM_000944
PPP3CAhsa-miR-513b-3p86.233NM_001130691
PPP3CAhsa-miR-568885.9785NM_000944
PPP3CAhsa-miR-58385.4259NM_000944
PPP3CAhsa-miR-239285.4084NM_001130691
PPP3CAhsa-miR-94485.0594NM_000944
PPP3CAhsa-miR-194-5p84.8172NM_000944
PPP3CAhsa-miR-446984.7066NM_001130691
PPP3CAhsa-miR-182-5p84.6627NM_000944
PPP3CAhsa-miR-96-5p84.6627NM_000944
PPP3CAhsa-miR-499a-5p84.585NM_000944
PPP3CAhsa-miR-495-3p84.2237NM_000944
PPP3CAhsa-miR-316384.0156NM_000944
PPP3CAhsa-let-7c-3p83.3513NM_000944
PPP3CAhsa-miR-6768-3p83.0598NM_000944
PPP3CAhsa-miR-318582.5781NM_001130691
PPP3CAhsa-miR-1271-5p82.5227NM_000944
PPP3CAhsa-miR-1213382.5227NM_000944
PPP3CAhsa-miR-464282.4935NM_000944
PPP3CAhsa-miR-6511a-5p82.2322NM_000944
PPP3CAhsa-miR-1910-3p82.2322NM_000944
PPP3CAhsa-miR-432882.0828NM_000944
PPP3CAhsa-miR-4761-3p81.6622NM_000944
PPP3CAhsa-miR-548p81.59NM_001130691
PPP3CAhsa-miR-30081.5352NM_000944
PPP3CAhsa-miR-381-3p81.5352NM_000944
PPP3CAhsa-miR-125681.3084NM_000944
PPP3CAhsa-miR-548c-3p81.1044NM_000944
PPP3CAhsa-miR-17-3p80.8239NM_001130691
PPP3CAhsa-miR-59580.6613NM_001130691
PPP3CAhsa-miR-544b80.5915NM_000944
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Motifs and transcription factors (TFs) regulating PPP3CA

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
PPP3CAmetacluster_7.13ZFX (directAnnotation).
PPP3CAmetacluster_151.2ZNF23 (directAnnotation).
PPP3CAmetacluster_170.2KLF1; KLF10; KLF10; KLF11; KLF11; KLF11; KLF12; KLF12; KLF14; KLF15; KLF17; KLF2; KLF5; KLF7; KLF7; KLF8; MAZ; MAZ; PATZ1; SP1; SP1; SP1; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP4; SP4; SP5; SP6; SP7; SP8; SP9; ZNF281 (directAnnotation). E2F1; E2F4; KLF10; KLF13; KLF14; KLF17; KLF2; KLF7; SP1; SP1; SP3; SP4; SP5; SP6; SP7 (inferredBy_Orthology).
PPP3CAtransfac_pro__M05479ZNF580 (directAnnotation).
PPP3CAmetacluster_155.23BCL11B; ZNF711; ZNF711 (directAnnotation). ZFY (inferredBy_Orthology).
PPP3CAkznf__ZNF783_Imbeault2017_OM_MEMEZNF783 (directAnnotation).
PPP3CAmetacluster_144.3ZNF704; ZNF704 (directAnnotation).
PPP3CAtransfac_pro__M05628ZNF735 (directAnnotation).
PPP3CAhomer__TWVGGTCCGC_HINFPHINFP (directAnnotation).
PPP3CAmetacluster_135.10MBD2; MBD2; MECP2; MECP2 (directAnnotation).
PPP3CAjaspar__MA0079.5SP1 (directAnnotation).
PPP3CAtaipale_tf_pairs__GCM1_ETV1_RTRNNGGCGGAAGTN_CAPETV1; GCM1 (directAnnotation).
PPP3CAmetacluster_55.3E2F6; EGR1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; ZBTB2; ZSCAN10 (directAnnotation). NFE2L1; NRF1; NRF1; NRF1 (inferredBy_Orthology).
PPP3CAdbtfbs__E2F8_representative_N1E2F8 (directAnnotation).
PPP3CAtransfac_pro__M04950EGR1 (directAnnotation).
PPP3CAmetacluster_15.3E2F1; E2F6; E2F8; E2F8; TFDP1 (directAnnotation). E2F3 (inferredBy_Orthology).
PPP3CAtaipale_cyt_meth__ZNF385D_NCGTCGCGACGN_eDBD_methZNF385D (directAnnotation).
PPP3CAtaipale_tf_pairs__ERF_HES7_NNCACGTGNNNNCCGGAANN_CAP_reprERF; HES7 (directAnnotation).
PPP3CAtaipale_tf_pairs__E2F1_ELK1_SGCGCNNNNNCGGAAGN_CAP_reprE2F1; ELK1 (directAnnotation).
PPP3CAtransfac_pro__M00652NRF1 (directAnnotation).
PPP3CAtaipale_tf_pairs__E2F1_HES7_RRCRCGYGYNNNNSGCGCSN_CAP_reprE2F1; HES7 (directAnnotation).
PPP3CAtransfac_pro__M04866HDAC2 (directAnnotation).
PPP3CAjaspar__MA1122.1TFDP1 (directAnnotation).
PPP3CAswissregulon__hs__ZBTB14ZBTB14 (directAnnotation).
PPP3CAmetacluster_34.3EGR1; ETS1; SETDB1; SIX5; SIX5; ZNF143; ZNF76 (directAnnotation).
PPP3CAtaipale_tf_pairs__ETV2_HES7_RSCGGAANNNNNNCACGTGNN_CAP_reprETV2; HES7 (directAnnotation).
PPP3CAmetacluster_135.11NR2C2 (directAnnotation).
PPP3CAkznf__ZNF730_Imbeault2017_RP_RCADEZNF730 (directAnnotation).
PPP3CAcisbp__M00968MTF2 (directAnnotation).
PPP3CAmetacluster_160.20JUND; PRDM15 (directAnnotation).
PPP3CAcisbp__M00341PAX6 (directAnnotation).
PPP3CAmetacluster_141.5NR3C1; THAP1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY2; YY2; ZNF597 (directAnnotation). YY1; YY1; YY1; YY2; ZFP42 (inferredBy_Orthology).
PPP3CAmetacluster_151.1KAT7; PML; SMAD5; TAF1; ZFP37; ZGPAT; ZNF519; ZNF519; ZNF571; ZNF770; ZNF770; ZNF770; ZSCAN22; ZSCAN22 (directAnnotation).
PPP3CAjaspar__MA0185.1DEAF1 (inferredBy_Orthology).
PPP3CAmetacluster_61.1DEAF1; DEAF1 (directAnnotation).
PPP3CAcisbp__M00788ZFY (inferredBy_Orthology).
PPP3CAkznf__ZNF213_Schmitges2016_RCADEZNF213 (directAnnotation).
PPP3CAhdpi__ZNF304ZNF304 (directAnnotation).
PPP3CAtransfac_pro__M02844BCL6B (inferredBy_Orthology).
PPP3CAmetacluster_125.2TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2D; TFAP2D; TFAP2D; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; ZNF611; ZNF611 (directAnnotation). TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E (inferredBy_Orthology).
PPP3CAmetacluster_133.1ZNF304; ZNF304; ZSCAN22 (directAnnotation).
PPP3CAtransfac_pro__M01199TRIM28 (directAnnotation).
PPP3CAtransfac_public__M00189TFAP2A; TFAP2B; TFAP2C (directAnnotation).
PPP3CAtransfac_pro__M01219SP1 (directAnnotation). SP3 (inferredBy_Orthology).
PPP3CAtransfac_pro__M03806ZBTB7C (directAnnotation).
PPP3CAtransfac_pro__M00915TFAP2A; TFAP2B; TFAP2C (directAnnotation).
PPP3CAtransfac_pro__M06135ZNF28 (directAnnotation).
PPP3CAtaipale_cyt_meth__ZBTB2_NTTTMCGGTWAN_eDBDZBTB2 (directAnnotation).
PPP3CAmetacluster_19.1GMEB2; GMEB2; GMEB2 (directAnnotation).
PPP3CAtaipale_tf_pairs__GCM1_ELK1_RTGCGGGCGGAAGTN_CAP_1ELK1; GCM1 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.
Target nameDrug nameDrug IDDrug type
PPP3CA"Myristic acid"

DB08231

small molecule
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1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."