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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: PHF6

Summary for PHF6

Gene informationGene symbol

PHF6

Ensembl ID

ENSG00000156531

Entrez ID

84295

Gene namePHD finger protein 6
SynonymsBFLS|BORJ|CENP-31|KIAA1823|MGC14797
Gene typeprotein_coding
UniProtAcc

NA


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Dataset with differentially expressed gene: PHF6

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE153697

patientsBone marrow aspirateAcute lymphoblastic leukemiaRelapsed B-cell acute lymphoblastic leukemia (B-ALL)Immunotherapyanti-CD19 CAR-TNAMalignant cells0.2773363.14e-16

GSE189460

patientsBone marrow aspirateMultiple myelomaMultiple myeloma (MM)Targeted therapybortezomib + melphalan + prednisolonepreMalignant cells0.2798940.00e+00

GSE131984_JQ1Pac

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + paclitaxelNAMalignant cells-0.2614264.09e-10

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Expression of PHF6 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to PHF6

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating PHF6

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
PHF6hsa-miR-446587.532NM_032458
PHF6hsa-miR-990287.516NM_001015877
PHF6hsa-miR-512-5p87.2808NM_001015877
PHF6hsa-miR-5587-5p87.1158NM_032458
PHF6hsa-miR-6501-5p87.0662NM_001015877
PHF6hsa-miR-548at-5p86.6061NM_001015877
PHF6hsa-miR-224-5p86.6006NM_032458
PHF6hsa-miR-431086.1896NM_032458
PHF6hsa-miR-366285.5823NM_001015877
PHF6hsa-miR-76185.2475NM_001015877
PHF6hsa-miR-214-3p85.2475NM_001015877
PHF6hsa-miR-582-5p84.9419NM_032458
PHF6hsa-miR-6768-5p84.9184NM_001015877
PHF6hsa-miR-498-5p84.9129NM_032458
PHF6hsa-miR-430284.8435NM_032458
PHF6hsa-miR-3619-5p84.5715NM_001015877
PHF6hsa-miR-548ar-3p84.3402NM_032458
PHF6hsa-miR-885-5p84.2909NM_032458
PHF6hsa-miR-472984.2719NM_032458
PHF6hsa-miR-315984.118NM_032458
PHF6hsa-miR-548f-3p84.0059NM_032458
PHF6hsa-miR-548az-3p84.0059NM_032458
PHF6hsa-miR-548e-3p84.0059NM_032458
PHF6hsa-miR-548bc84.0059NM_032458
PHF6hsa-miR-4477b83.8174NM_001015877
PHF6hsa-miR-806983.6073NM_001015877
PHF6hsa-miR-6759-5p83.538NM_001015877
PHF6hsa-miR-335-5p83.4784NM_001015877
PHF6hsa-miR-425583.4315NM_032458
PHF6hsa-miR-7157-5p83.2442NM_032458
PHF6hsa-miR-526b-5p83.1973NM_032458
PHF6hsa-miR-128382.98NM_032458
PHF6hsa-miR-548a-3p82.8188NM_032458
PHF6hsa-miR-848582.4565NM_032458
PHF6hsa-miR-548e-5p81.9204NM_032458
PHF6hsa-miR-432581.847NM_032458
PHF6hsa-miR-3121-5p81.8029NM_032458
PHF6hsa-miR-60381.6791NM_032458
PHF6hsa-miR-568081.5542NM_001015877
PHF6hsa-miR-3613-3p81.473NM_001015877
PHF6hsa-miR-3682-3p81.2163NM_032458
PHF6hsa-miR-34a-3p80.8301NM_032458
PHF6hsa-miR-518a-5p80.7296NM_001015877
PHF6hsa-miR-52780.7296NM_001015877
PHF6hsa-miR-129080.6967NM_032458
PHF6hsa-miR-1211780.315NM_001015877
PHF6hsa-miR-313380.1737NM_001015877
PHF6hsa-miR-132380.1128NM_032458
PHF6hsa-miR-139-5p80.0017NM_032458
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Motifs and transcription factors (TFs) regulating PHF6

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
PHF6metacluster_191.2ELK4; NR2C2; NR2C2; NR2C2; NR2C2 (directAnnotation). GABPA (inferredBy_Orthology).
PHF6taipale_tf_pairs__ETS2_RCCGGAAGTG_HTETS2 (directAnnotation).
PHF6metacluster_174.3MBD2; NFYA; NFYB; NFYC; PBX3 (directAnnotation).
PHF6metacluster_174.2CEBPZ; CEBPZ; DRAP1; FOS; FOXI1; FOXI1; HMGXB3; IRF3; NFYA; NFYA; NFYA; NFYA; NFYA; NFYA; NFYA; NFYA; NFYA; NFYB; NFYB; NFYB; NFYB; NFYB; NFYC; NFYC; NFYC; NFYC; NFYC; NFYC; NFYC; PBX3; PBX3; SP2 (directAnnotation). NFYA; NFYA; NFYC; PBX1; PBX3 (inferredBy_Orthology).
PHF6metacluster_197.2E2F4; E2F7; E2F7; E2F7; E2F8; E2F8 (directAnnotation).
PHF6swissregulon__hs__ELF2ELF2 (directAnnotation).
PHF6swissregulon__mm__E2f7E2F7 (inferredBy_Orthology).
PHF6transfac_pro__M04826EP300 (directAnnotation).
PHF6taipale_tf_pairs__MEIS1_ELF1_NTGCCGGAAGTN_CAP_reprELF1; MEIS1 (directAnnotation).
PHF6metacluster_55.3E2F6; EGR1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; ZBTB2; ZSCAN10 (directAnnotation). NFE2L1; NRF1; NRF1; NRF1 (inferredBy_Orthology).
PHF6taipale_tf_pairs__FOXO1_ELK3_RCCGGAWGTKKW_CAPELK3; FOXO1 (directAnnotation).
PHF6transfac_pro__M00652NRF1 (directAnnotation).
PHF6hdpi__ETV4ETV4 (directAnnotation).
PHF6dbtfbs__GMEB1_K562_ENCSR928KOR_merged_N1GMEB1 (directAnnotation).
PHF6metacluster_138.2ELF1; ELF2; ELF4; ELK1; ELK1; ELK1; ELK1; ELK3; ELK4; ELK4; ELK4; ELK4; ELK4; ELK4; ELK4; ERF; ERG; ERG; ERG; ERG; ETS1; ETS1; ETS2; ETS2; ETV1; ETV1; ETV1; ETV2; ETV3; ETV4; ETV5; ETV5; FEV; FLI1; FLI1; GABPA; GABPA; KMT2B; SPDEF; SPDEF; SPDEF; ZBTB11; ZNF518A; ZNF580 (directAnnotation). ELF1; ELF2; ELF4; ELK1; ELK1; ELK3; ELK4; ERG; ETS1; ETS2; ETV1; ETV2; ETV3; ETV4; ETV5; FEV; FLI1; FLI1; GABPA; SPDEF; SPDEF (inferredBy_Orthology).
PHF6hdpi__ELF2ELF2 (directAnnotation).
PHF6swissregulon__hs__ELK1ELK1 (directAnnotation).
PHF6taipale_tf_pairs__FOXO1_ELK1_TGTTGCCGGANNN_CAPELK1; FOXO1 (directAnnotation).
PHF6taipale_tf_pairs__ETV5_EOMES_TNRCACCGGAWN_CAPEOMES; ETV5 (directAnnotation).
PHF6metacluster_183.4ETS1 (inferredBy_Orthology).
PHF6taipale_tf_pairs__E2F1_ELK1_SGCGCNNNNNCGGAAGN_CAP_reprE2F1; ELK1 (directAnnotation).
PHF6transfac_pro__M02089E2F3 (directAnnotation).
PHF6transfac_pro__M02898SMAD3 (directAnnotation).
PHF6metacluster_15.2E2F1; E2F1; E2F1; E2F1; E2F1; E2F3; E2F4; E2F4; E2F4; E2F6; E2F6; E2F6; E2F6; E2F6; E2F6; E2F6; E2F7; TFDP1; TFDP2; ZNF566; ZNF566; ZNF574 (directAnnotation). E2F3; E2F3; E2F4 (inferredBy_Orthology).
PHF6metacluster_15.1E2F4; E2F4; E2F4; E2F4; E2F7; ZFP69B (directAnnotation). E2F4 (inferredBy_Orthology).
PHF6metacluster_170.2KLF1; KLF10; KLF10; KLF11; KLF11; KLF11; KLF12; KLF12; KLF14; KLF15; KLF17; KLF2; KLF5; KLF7; KLF7; KLF8; MAZ; MAZ; PATZ1; SP1; SP1; SP1; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP4; SP4; SP5; SP6; SP7; SP8; SP9; ZNF281 (directAnnotation). E2F1; E2F4; KLF10; KLF13; KLF14; KLF17; KLF2; KLF7; SP1; SP1; SP3; SP4; SP5; SP6; SP7 (inferredBy_Orthology).
PHF6transfac_pro__M00803E2F1; E2F3; E2F4; TFDP1 (directAnnotation).
PHF6hdpi__HIP2UBE2K (directAnnotation).
PHF6hdpi__NRLNRL (directAnnotation).
PHF6transfac_pro__M00430E2F1 (directAnnotation).
PHF6homer__GGCGGGAARN_E2F6E2F6 (directAnnotation).
PHF6homer__NANTGCSGCA_Zfp57ZFP57 (directAnnotation).
PHF6transfac_pro__M07329SP7 (directAnnotation).
PHF6metacluster_197.3E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F2; E2F2; E2F2; E2F2; E2F2; E2F3; E2F3; E2F3; E2F3; E2F3; E2F3; E2F3; E2F4; E2F4; E2F4; E2F4; E2F4; E2F4; E2F4; E2F4; E2F4; E2F4; E2F5; E2F5; E2F5; E2F5; E2F6; E2F7; E2F7; E2F7; RB1; TFDP1; TFDP1; TFDP1; TFDP1; TFDP1; TFDP1; TFDP1; TFDP2; TFDP2 (directAnnotation).
PHF6transfac_pro__M07397ZNF148 (directAnnotation).
PHF6transfac_pro__M01219SP1 (directAnnotation). SP3 (inferredBy_Orthology).
PHF6metacluster_3.11SP1; SP1; SP2; SP3; SP3; SP4 (directAnnotation).
PHF6cisbp__M07938E2F1 (directAnnotation).
PHF6hocomoco__EGR4_HUMAN.H11MO.0.DEGR4 (directAnnotation).
PHF6metacluster_3.7SP1; SP1; SP1; SP1; SP1; SP1; SP1; SP1; SP2; SP2; SP2; SP2; SP3; SP3; SP3; SP4; SP4; SP4; SP4; SP4; SP4; SP5 (directAnnotation).
PHF6transfac_pro__M07436WT1 (directAnnotation).
PHF6metacluster_3.14WT1; WT1 (directAnnotation).
PHF6transfac_pro__M01090SMAD9 (inferredBy_Orthology).
PHF6transfac_pro__M01837KLF11 (directAnnotation).
PHF6hocomoco__TYY2_HUMAN.H11MO.0.DYY2 (directAnnotation).
PHF6transfac_pro__M02844BCL6B (inferredBy_Orthology).
PHF6transfac_pro__M07310SP5 (directAnnotation).
PHF6taipale_cyt_meth__ZNF281_NCCCCTCCCCCN_eDBD_methZNF281 (directAnnotation).
PHF6metacluster_195.2EGR2; KLF10; KLF10; KLF11; KLF11; KLF11; KLF13; KLF13; KLF13; KLF13; KLF13; KLF14; KLF14; KLF14; KLF14; KLF14; KLF15; KLF15; KLF16; KLF3; KLF8; KLF9; KLF9; KLF9; SP1; SP1; SP1; SP3; SP3; SP4; SP8; SP8; SP8; SP9; SP9 (directAnnotation). EGR1; KLF1; KLF12; KLF13; KLF14; KLF14; KLF14; KLF14; KLF14; KLF14; KLF16; KLF17; KLF17; KLF17; KLF17; KLF18; KLF18; KLF18; KLF18; KLF18; KLF18; KLF2; KLF2; KLF2; KLF3; KLF4; KLF5; KLF5; KLF5; KLF6; KLF7; KLF7; KLF8; KLF9; SP1; SP3; SP4; SP4; SP5; SP5; SP5; SP6; SP7; SP8; SP9 (inferredBy_Orthology).
PHF6transfac_pro__M04817ZBTB33 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."