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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: PDS5A

Summary for PDS5A

Gene informationGene symbol

PDS5A

Ensembl ID

ENSG00000121892

Entrez ID

23244

Gene namePDS5 cohesin associated factor A
SynonymsKIAA0648|PIG54|SCC-112
Gene typeprotein_coding
UniProtAcc

Q29RF7


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Dataset with differentially expressed gene: PDS5A

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE139386

H3122 cell lineCell lineLung cancerEML4-ALK fusion-positive non-small cell lung cancer (NSCLC)Targeted therapyceritinibNAMalignant cells-0.3975110.00e+00

GSE131984_JQ1Pac

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + paclitaxelNAMalignant cells-0.31485.96e-10

GSE108397

451Lu cell lineCell lineMelanomaMelanomaTargeted therapyPLX-4720NAMalignant cells-0.3464560.00e+00

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Expression of PDS5A in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to PDS5A

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating PDS5A

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
PDS5Ahsa-miR-302d-5p91.298NM_001100399
PDS5Ahsa-miR-302b-5p91.298NM_001100399
PDS5Ahsa-miR-4697-3p91.1476NM_001100399
PDS5Ahsa-miR-491-3p91.1473NM_001100399
PDS5Ahsa-miR-4793-3p90.7543NM_001100399
PDS5Ahsa-miR-361290.726NM_001100399
PDS5Ahsa-miR-65090.726NM_001100399
PDS5Ahsa-miR-29890.6364NM_001100399
PDS5Ahsa-miR-5571-5p90.0878NM_001100399
PDS5Ahsa-miR-211-3p89.6015NM_001100399
PDS5Ahsa-miR-394189.5625NM_001100399
PDS5Ahsa-miR-129-5p89.3335NM_001100399
PDS5Ahsa-miR-9983-3p89.3335NM_001100399
PDS5Ahsa-miR-4790-3p88.9666NM_001100400
PDS5Ahsa-miR-1468-3p88.1624NM_001100399
PDS5Ahsa-miR-5003-3p88.1495NM_001100399
PDS5Ahsa-miR-152-5p88.1437NM_001100399
PDS5Ahsa-miR-471888.0655NM_001100399
PDS5Ahsa-miR-508-5p87.8086NM_001100399
PDS5Ahsa-miR-4652-3p87.3676NM_001100399
PDS5Ahsa-miR-149-5p87.2736NM_001100399
PDS5Ahsa-miR-302c-5p87.0483NM_001100399
PDS5Ahsa-miR-103a-3p87.0024NM_001100399
PDS5Ahsa-miR-10787.0024NM_001100399
PDS5Ahsa-miR-93486.5297NM_001100400
PDS5Ahsa-miR-510-3p86.4718NM_001100399
PDS5Ahsa-miR-3121-3p85.9286NM_001100400
PDS5Ahsa-miR-513a-5p85.6117NM_001100399
PDS5Ahsa-miR-129085.4845NM_001100399
PDS5Ahsa-miR-143-5p85.1674NM_001100399
PDS5Ahsa-miR-222-5p85.0642NM_001100399
PDS5Ahsa-miR-371485.0425NM_001100399
PDS5Ahsa-miR-519284.2086NM_001100399
PDS5Ahsa-miR-6828-3p83.9643NM_001100399
PDS5Ahsa-miR-46683.7789NM_001100399
PDS5Ahsa-miR-3145-5p83.6765NM_001100400
PDS5Ahsa-miR-430283.5921NM_001100399
PDS5Ahsa-miR-6888-5p83.5697NM_001100399
PDS5Ahsa-miR-5589-3p83.3554NM_001100400
PDS5Ahsa-miR-3191-5p83.3414NM_001100399
PDS5Ahsa-miR-22-3p83.3409NM_001100399
PDS5Ahsa-miR-494-3p83.33NM_001100399
PDS5Ahsa-miR-561-5p83.1124NM_001100399
PDS5Ahsa-miR-576-5p82.9255NM_001100400
PDS5Ahsa-miR-397382.7086NM_001100400
PDS5Ahsa-miR-6875-5p82.6521NM_001100399
PDS5Ahsa-miR-3126-5p82.6521NM_001100399
PDS5Ahsa-miR-94381.9106NM_001100399
PDS5Ahsa-miR-4789-5p81.7789NM_001100399
PDS5Ahsa-miR-118481.5131NM_001100399
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Motifs and transcription factors (TFs) regulating PDS5A

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
PDS5Ametacluster_7.13ZFX (directAnnotation).
PDS5Acisbp__M01863ZNF711 (inferredBy_Orthology).
PDS5Atransfac_pro__M05578ZFP92 (inferredBy_Orthology).
PDS5Ametacluster_151.2ZNF23 (directAnnotation).
PDS5Ametacluster_170.2KLF1; KLF10; KLF10; KLF11; KLF11; KLF11; KLF12; KLF12; KLF14; KLF15; KLF17; KLF2; KLF5; KLF7; KLF7; KLF8; MAZ; MAZ; PATZ1; SP1; SP1; SP1; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP4; SP4; SP5; SP6; SP7; SP8; SP9; ZNF281 (directAnnotation). E2F1; E2F4; KLF10; KLF13; KLF14; KLF17; KLF2; KLF7; SP1; SP1; SP3; SP4; SP5; SP6; SP7 (inferredBy_Orthology).
PDS5Ametacluster_155.23BCL11B; ZNF711; ZNF711 (directAnnotation). ZFY (inferredBy_Orthology).
PDS5Akznf__ZNF783_Imbeault2017_OM_MEMEZNF783 (directAnnotation).
PDS5Ametacluster_144.3ZNF704; ZNF704 (directAnnotation).
PDS5Ahomer__TWVGGTCCGC_HINFPHINFP (directAnnotation).
PDS5Ametacluster_135.10MBD2; MBD2; MECP2; MECP2 (directAnnotation).
PDS5Adbtfbs__E2F8_representative_N1E2F8 (directAnnotation).
PDS5Atransfac_pro__M04950EGR1 (directAnnotation).
PDS5Ametacluster_15.3E2F1; E2F6; E2F8; E2F8; TFDP1 (directAnnotation). E2F3 (inferredBy_Orthology).
PDS5Ataipale_tf_pairs__ETV2_HES7_NNCACGTGNNNNNCGGAWRY_CAP_reprETV2; HES7 (directAnnotation).
PDS5Ataipale_cyt_meth__E2F2_GCGCGCGCGYW_eDBD_reprE2F2 (directAnnotation).
PDS5Ametacluster_197.2E2F4; E2F7; E2F7; E2F7; E2F8; E2F8 (directAnnotation).
PDS5Acisbp__M08198ELF1 (directAnnotation).
PDS5Atransfac_pro__M00652NRF1 (directAnnotation).
PDS5Ataipale_tf_pairs__E2F1_HES7_RRCRCGYGYNNNNSGCGCSN_CAP_reprE2F1; HES7 (directAnnotation).
PDS5Atransfac_pro__M04866HDAC2 (directAnnotation).
PDS5Ajaspar__MA1122.1TFDP1 (directAnnotation).
PDS5Aswissregulon__hs__ZBTB14ZBTB14 (directAnnotation).
PDS5Ahdpi__ETV4ETV4 (directAnnotation).
PDS5Ahdpi__TP73TP73 (directAnnotation).
PDS5Ahdpi__ELF2ELF2 (directAnnotation).
PDS5Ataipale_tf_pairs__FOXO1_ELK1_TGTTGCCGGANNN_CAPELK1; FOXO1 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."