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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target

Gene: NRXN1

Summary for NRXN1

Gene informationGene symbol

NRXN1

Ensembl ID

ENSG00000179915

Entrez ID

9378

Gene nameneurexin 1
SynonymsHs.22998|KIAA0578
Gene typeprotein_coding
UniProtAcc

NA


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Dataset with differentially expressed gene: NRXN1

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE138267

CDXTumor tissueLung cancerSmall cell lung cancer (SCLC)ChemotherapyNANAMalignant cells0.4101880.00e+00

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Expression of NRXN1 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to NRXN1

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating NRXN1

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
NRXN1hsa-miR-539-3p90.7282NM_001135659
NRXN1hsa-miR-4477a90.2658NM_001135659
NRXN1hsa-miR-6513-3p90.2646NM_001135659
NRXN1hsa-miR-548a-5p90.1547NM_138735
NRXN1hsa-miR-548ar-5p90.1547NM_138735
NRXN1hsa-miR-430790.085NM_138735
NRXN1hsa-miR-19a-5p90.064NM_138735
NRXN1hsa-miR-548aw89.9923NM_001135659
NRXN1hsa-miR-366289.8045NM_001135659
NRXN1hsa-miR-205489.7633NM_138735
NRXN1hsa-miR-10b-3p89.0548NM_001135659
NRXN1hsa-miR-3121-5p88.8921NM_138735
NRXN1hsa-miR-190a-3p88.7783NM_138735
NRXN1hsa-miR-570-3p88.2306NM_001135659
NRXN1hsa-miR-6885-3p88.1815NM_138735
NRXN1hsa-miR-397688.1108NM_138735
NRXN1hsa-miR-5580-3p87.9946NM_138735
NRXN1hsa-miR-55987.936NM_138735
NRXN1hsa-miR-548b-5p87.9037NM_138735
NRXN1hsa-miR-548ad-5p87.9037NM_138735
NRXN1hsa-miR-548j-5p87.9037NM_138735
NRXN1hsa-miR-548as-5p87.9037NM_138735
NRXN1hsa-miR-548i87.9037NM_138735
NRXN1hsa-miR-548o-5p87.9037NM_138735
NRXN1hsa-miR-548bb-5p87.9037NM_138735
NRXN1hsa-miR-548ae-5p87.9037NM_138735
NRXN1hsa-miR-548w87.9037NM_138735
NRXN1hsa-miR-548h-5p87.9037NM_138735
NRXN1hsa-miR-548ab87.9037NM_138735
NRXN1hsa-miR-548au-5p87.9037NM_138735
NRXN1hsa-miR-548y87.9037NM_138735
NRXN1hsa-miR-548ap-5p87.9037NM_138735
NRXN1hsa-miR-548c-5p87.9037NM_138735
NRXN1hsa-miR-548am-5p87.9037NM_138735
NRXN1hsa-miR-548ak87.9037NM_138735
NRXN1hsa-miR-548ay-5p87.9037NM_138735
NRXN1hsa-miR-548d-5p87.9037NM_138735
NRXN1hsa-miR-364687.5679NM_138735
NRXN1hsa-miR-320a-3p87.133NM_001135659
NRXN1hsa-miR-442987.133NM_001135659
NRXN1hsa-miR-320c87.133NM_001135659
NRXN1hsa-miR-320d87.133NM_001135659
NRXN1hsa-miR-320b87.133NM_001135659
NRXN1hsa-miR-141-3p87.1247NM_001135659
NRXN1hsa-miR-200a-3p87.1247NM_001135659
NRXN1hsa-miR-211386.8775NM_001135659
NRXN1hsa-miR-550b-2-5p86.8403NM_001135659
NRXN1hsa-miR-6760-3p85.8188NM_138735
NRXN1hsa-miR-548aq-5p85.5904NM_138735
NRXN1hsa-miR-548f-5p85.5193NM_001135659
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Motifs and transcription factors (TFs) regulating NRXN1

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
NRXN1taipale_tf_pairs__GCM1_SPDEF_RTGNKGGCGGAWG_CAP_reprGCM1; SPDEF (directAnnotation).
NRXN1transfac_pro__M01219SP1 (directAnnotation). SP3 (inferredBy_Orthology).
NRXN1transfac_pro__M07397ZNF148 (directAnnotation).
NRXN1metacluster_131.7EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR2; EGR2; EGR2; EGR2; EGR2; EGR2; EGR3; EGR3; EGR3; EGR3; EGR3; EGR3; EGR4; EGR4; WT1 (directAnnotation). EGR1; EGR1; EGR1; EGR1; EGR1; EGR2; EGR2; EGR2; EGR2; EGR2; EGR3; EGR3; WT1; ZBTB43; ZBTB43; ZBTB43; ZBTB43; ZBTB5; ZBTB5; ZBTB5; ZBTB5; ZBTB7A; ZBTB7A; ZBTB7A; ZBTB7A; ZNF367; ZNF367; ZNF367; ZNF367; ZNF740; ZNF740; ZNF740; ZNF740 (inferredBy_Orthology).
NRXN1metacluster_131.4EGR2; EGR2; ZFHX2; ZNF141 (directAnnotation).
NRXN1taipale_cyt_meth__ZNF281_NCCCCTCCCCCN_eDBD_methZNF281 (directAnnotation).
NRXN1metacluster_15.2E2F1; E2F1; E2F1; E2F1; E2F1; E2F3; E2F4; E2F4; E2F4; E2F6; E2F6; E2F6; E2F6; E2F6; E2F6; E2F6; E2F7; TFDP1; TFDP2; ZNF566; ZNF566; ZNF574 (directAnnotation). E2F3; E2F3; E2F4 (inferredBy_Orthology).
NRXN1metacluster_3.11SP1; SP1; SP2; SP3; SP3; SP4 (directAnnotation).
NRXN1homer__GGGGGGGG_MazMAZ (directAnnotation).
NRXN1transfac_pro__M01175ZBTB7B (directAnnotation).
NRXN1taipale_cyt_meth__ZNF460_NRMCGCCCCCCGN_eDBD_methZNF460 (directAnnotation).
NRXN1tfdimers__MD00151CHURC1 (directAnnotation).
NRXN1metacluster_3.7SP1; SP1; SP1; SP1; SP1; SP1; SP1; SP1; SP2; SP2; SP2; SP2; SP3; SP3; SP3; SP4; SP4; SP4; SP4; SP4; SP4; SP5 (directAnnotation).
NRXN1metacluster_15.1E2F4; E2F4; E2F4; E2F4; E2F7; ZFP69B (directAnnotation). E2F4 (inferredBy_Orthology).
NRXN1transfac_pro__M01303SP1 (directAnnotation).
NRXN1metacluster_141.5NR3C1; THAP1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY2; YY2; ZNF597 (directAnnotation). YY1; YY1; YY1; YY2; ZFP42 (inferredBy_Orthology).
NRXN1swissregulon__hs__CHD1CHD1 (directAnnotation).
NRXN1transfac_pro__M02090E2F4 (directAnnotation).
NRXN1transfac_pro__M01714KLF15 (directAnnotation).
NRXN1metacluster_15.3E2F1; E2F6; E2F8; E2F8; TFDP1 (directAnnotation). E2F3 (inferredBy_Orthology).
NRXN1jaspar__MA1122.1TFDP1 (directAnnotation).
NRXN1hocomoco__PROX1_HUMAN.H11MO.0.DPROX1 (directAnnotation).
NRXN1transfac_pro__M02089E2F3 (directAnnotation).
NRXN1metacluster_3.14WT1; WT1 (directAnnotation).
NRXN1metacluster_3.4SP1; SP2; SP2; SP3 (directAnnotation).
NRXN1metacluster_126.3LIN28B; LIN28B (directAnnotation).
NRXN1hocomoco__EGR4_HUMAN.H11MO.0.DEGR4 (directAnnotation).
NRXN1metacluster_3.5KLF14; KLF15; KLF15; KLF16 (directAnnotation).
NRXN1cisbp__M07938E2F1 (directAnnotation).
NRXN1homer__GGCGGGAARN_E2F6E2F6 (directAnnotation).
NRXN1transfac_pro__M07436WT1 (directAnnotation).
NRXN1transfac_pro__M02281SP1 (directAnnotation).
NRXN1taipale_tf_pairs__GCM1_ELF1_GTGCGGGCGGAAGTN_CAP_reprELF1; GCM1 (directAnnotation).
NRXN1kznf__ZNF730_Imbeault2017_RP_RCADEZNF730 (directAnnotation).
NRXN1transfac_pro__M02898SMAD3 (directAnnotation).
NRXN1transfac_public__M00491PATZ1 (directAnnotation).
NRXN1transfac_pro__M07461KLF1; KLF10; KLF11; KLF12; KLF13; KLF15; KLF16; KLF17; KLF2; KLF3; KLF4; KLF5; KLF6; KLF7; KLF8; KLF9 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.
Target nameDrug nameDrug IDDrug type
NRXN1"Calcium citrate"

DB11093

small molecule
NRXN1"Calcium phosphate dihydrate"

DB14481

small molecule
NRXN1"Calcium Phosphate"

DB11348

small molecule
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1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."