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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: NABP1

Summary for NABP1

Gene informationGene symbol

NABP1

Ensembl ID

ENSG00000173559

Entrez ID

64859

Gene namenucleic acid binding protein 1
SynonymsDKFZp667M1322|FLJ13624|FLJ22833|hSSB2|MGC111163|NABP1-OT1|OBFC2A|SOSS-B2|SSB2
Gene typeprotein_coding
UniProtAcc

NA


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Dataset with differentially expressed gene: NABP1

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE164551

patientsBone marrow aspirateMultiple myelomaRefractory multiple myeloma (MM)ImmunotherapyCAR-TNAMono/Macro0.4240822.81e-05

GSE139386

H3122 cell lineCell lineLung cancerEML4-ALK fusion-positive non-small cell lung cancer (NSCLC)Targeted therapyceritinibNAMalignant cells-0.4672440.00e+00

GSE199333

patientsBone marrow aspirateAcute myeloid leukemiaPrimary FLT3-ITD-mutated acute myeloid leukemia (AML)Targeted therapygilteritinibpostMalignant cells0.2574880.00e+00

GSE131984_JQ1Pal

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + palbociclibNAMalignant cells0.4360831.09e-31

GSE131984_Pal

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapypalbociclibNAMalignant cells0.5734611.98e-35

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells0.3991548.73e-04

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Expression of NABP1 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to NABP1

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.
Gene symbolMechanism

NABP1

Epigenetic Alteration of DNA, RNA or Protein
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MicroRNAs (miRNA) regulating NABP1

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
NABP1hsa-miR-26a-5p90.7776NM_001254736
NABP1hsa-miR-26b-5p90.7776NM_001254736
NABP1hsa-miR-513a-5p90.7684NM_001254736
NABP1hsa-miR-568890.276NM_001254736
NABP1hsa-miR-495-3p89.6387NM_001254736
NABP1hsa-miR-397589.2327NM_001254736
NABP1hsa-miR-446587.0914NM_001254736
NABP1hsa-miR-548n87.0223NM_001254736
NABP1hsa-miR-3059-5p85.6137NM_001254736
NABP1hsa-miR-4762-3p85.2395NM_001254736
NABP1hsa-miR-3085-5p85.0187NM_001031716
NABP1hsa-miR-651-3p84.1079NM_001031716
NABP1hsa-miR-4761-3p84.0921NM_001031716
NABP1hsa-miR-4691-5p83.7139NM_001031716
NABP1hsa-miR-6792-3p83.7139NM_001031716
NABP1hsa-miR-316383.5035NM_001254736
NABP1hsa-miR-4659a-3p83.4068NM_001254736
NABP1hsa-miR-4659b-3p83.4068NM_001254736
NABP1hsa-miR-105-5p83.3946NM_001031716
NABP1hsa-miR-7853-5p83.3946NM_001031716
NABP1hsa-miR-520f-5p82.7447NM_001031716
NABP1hsa-miR-6881-3p82.4714NM_001254736
NABP1hsa-miR-320a-3p82.1324NM_001031716
NABP1hsa-miR-320b82.1324NM_001031716
NABP1hsa-miR-320c82.1324NM_001031716
NABP1hsa-miR-320d82.1324NM_001031716
NABP1hsa-miR-442982.1324NM_001031716
NABP1hsa-miR-464381.6157NM_001031716
NABP1hsa-miR-365881.2368NM_001254736
NABP1hsa-miR-548d-3p80.7714NM_001031716
NABP1hsa-miR-452580.5297NM_001031716
NABP1hsa-miR-5010-5p80.5297NM_001031716
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Motifs and transcription factors (TFs) regulating NABP1

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
NABP1metacluster_191.2ELK4; NR2C2; NR2C2; NR2C2; NR2C2 (directAnnotation). GABPA (inferredBy_Orthology).
NABP1metacluster_55.3E2F6; EGR1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; ZBTB2; ZSCAN10 (directAnnotation). NFE2L1; NRF1; NRF1; NRF1 (inferredBy_Orthology).
NABP1taipale_tf_pairs__ETS2_RCCGGAAGTG_HTETS2 (directAnnotation).
NABP1jaspar__MA1483.2ELF2 (directAnnotation).
NABP1metacluster_15.3E2F1; E2F6; E2F8; E2F8; TFDP1 (directAnnotation). E2F3 (inferredBy_Orthology).
NABP1metacluster_191.3EHF; ELF1; ELF1; ELF1; ELF4; ELK1; ELK3; ELK3; ELK4; ELK4; ERF; ETS1; ETS2; ETV3; ETV4; ETV5; FEV; FEV; FLI1; FLI1; GABPA; GABPA; GABPA; GABPA; GABPA; GABPA; SPDEF; ZNF200 (directAnnotation). ELK1; ELK1; ELK3; ELK3; ELK4; ELK4; ETV1; ETV1; ETV4; ETV4; ETV4; ETV5; GABPA; GABPA (inferredBy_Orthology).
NABP1taipale_tf_pairs__ETV2_HES7_NNCACGTGNNNNNCGGAWRY_CAP_reprETV2; HES7 (directAnnotation).
NABP1taipale_cyt_meth__E2F2_GCGCGCGCGYW_eDBD_reprE2F2 (directAnnotation).
NABP1taipale_tf_pairs__ELK1_EOMES_RSCGGAANNAGGYGYNA_CAP_reprELK1; EOMES (directAnnotation).
NABP1taipale_tf_pairs__ERF_HES7_NNCACGTGNNNNCCGGAANN_CAP_reprERF; HES7 (directAnnotation).
NABP1taipale_tf_pairs__E2F1_ELK1_SGCGCNNNNNCGGAAGN_CAP_reprE2F1; ELK1 (directAnnotation).
NABP1transfac_pro__M00652NRF1 (directAnnotation).
NABP1taipale_tf_pairs__E2F1_HES7_RRCRCGYGYNNNNSGCGCSN_CAP_reprE2F1; HES7 (directAnnotation).
NABP1transfac_pro__M04866HDAC2 (directAnnotation).
NABP1jaspar__MA1122.1TFDP1 (directAnnotation).
NABP1metacluster_166.4BCLAF1; EHF; ELF1; ELF1; ELF1; ELF1; ELF1; ELF1; ELF2; ELF2; ELF4; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK3; ELK3; ELK3; ELK3; ELK4; ERG; ERG; ERG; ERG; ETS1; ETS1; ETS1; ETS1; ETS1; ETV1; ETV1; ETV1; ETV1; ETV2; ETV3; ETV4; ETV4; ETV4; ETV4; ETV4; ETV5; ETV7; FEV; FEV; FLI1; FLI1; FLI1; FLI1; GABPA; GABPA; GABPA; GABPA; GABPA; GABPA; GABPB1; GATAD1; PHF20; ZBTB25; ZBTB40 (directAnnotation). EHF; ELF1; ELF1; ELF3; ELF5; ELK3; ELK4; ERG; ETS1; ETV1; ETV2; ETV4; FLI1; GABPA; GABPA (inferredBy_Orthology).
NABP1swissregulon__hs__ZBTB14ZBTB14 (directAnnotation).
NABP1taipale_tf_pairs__TFAP2C_E2F8_NNTCCCGCNNNCCNNNGGC_CAP_reprE2F8; TFAP2C (directAnnotation).
NABP1dbtfbs__ZBTB8A_HEK293_ENCSR481FEC_merged_N1ZBTB8A (directAnnotation).
NABP1swissregulon__hs__CHD1CHD1 (directAnnotation).
NABP1metacluster_135.10MBD2; MBD2; MECP2; MECP2 (directAnnotation).
NABP1taipale_cyt_meth__ZNF460_NRMCGCCCCCCGN_eDBD_methZNF460 (directAnnotation).
NABP1kznf__ZNF846_Imbeault2017_RP_ChIP-seqZNF846 (directAnnotation).
NABP1taipale_cyt_meth__E2F2_NCGCGCGCGCM_eDBD_methE2F2 (directAnnotation).
NABP1metacluster_143.14ZNF320 (directAnnotation).
NABP1kznf__ZNF383_Imbeault2017_RP_RCADEZNF383 (directAnnotation).
NABP1metacluster_144.8ZNF30; ZNF30 (directAnnotation).
NABP1metacluster_23.9GLIS1; GLIS3; GLIS3; ZNF575 (directAnnotation). GLIS2; GLIS2; GLIS3; ZNF575; ZXDA; ZXDA; ZXDA; ZXDA; ZXDB; ZXDB; ZXDB; ZXDB; ZXDC; ZXDC; ZXDC; ZXDC (inferredBy_Orthology).
NABP1metacluster_61.1DEAF1; DEAF1 (directAnnotation).
NABP1kznf__ZNF548_Imbeault2017_RP_RCADEZNF548 (directAnnotation).
NABP1kznf__ZNF141_Imbeault2017_RP_RCADEZNF141 (directAnnotation).
NABP1transfac_pro__M04617ZBTB7A (directAnnotation).
NABP1transfac_pro__M01973PLAG1 (directAnnotation).
NABP1metacluster_151.2ZNF23 (directAnnotation).
NABP1metacluster_151.1KAT7; PML; SMAD5; TAF1; ZFP37; ZGPAT; ZNF519; ZNF519; ZNF571; ZNF770; ZNF770; ZNF770; ZSCAN22; ZSCAN22 (directAnnotation).
NABP1taipale_tf_pairs__TFAP2C_HES7_NNCRCGYGNNNNNNSCCNNNGGS_CAP_reprHES7; TFAP2C (directAnnotation).
NABP1metacluster_66.1MTF1; ZNF320; ZNF320; ZNF320; ZNF782 (directAnnotation).
NABP1cisbp__M01864EGR1 (inferredBy_Orthology).
NABP1tfdimers__MD00391KLF4 (directAnnotation).
NABP1kznf__ZNF267_Imbeault2017_RP_RCADEZNF267 (directAnnotation).
NABP1tfdimers__MD00151CHURC1 (directAnnotation).
NABP1transfac_pro__M04817ZBTB33 (directAnnotation).
NABP1cisbp__M00139ZNF281 (inferredBy_Orthology).
NABP1taipale_tf_pairs__TFAP2C_HES7_NNCRCGYGNNNNNNNSCCNNNGGS_CAP_reprHES7; TFAP2C (directAnnotation).
NABP1metacluster_144.5ZNF610; ZNF610; ZNF610 (directAnnotation).
NABP1transfac_public__M00491PATZ1 (directAnnotation).
NABP1taipale_tf_pairs__GCM1_SPDEF_RTGNKGGCGGAWG_CAP_reprGCM1; SPDEF (directAnnotation).
NABP1metacluster_3.10KLF2; KLF4 (directAnnotation).
NABP1kznf__ZNF90_Imbeault2017_OM_RCADEZNF90 (directAnnotation).
NABP1transfac_pro__M01253CNOT3 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."