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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: NAB1

Summary for NAB1

Gene informationGene symbol

NAB1

Ensembl ID

ENSG00000138386

Entrez ID

4664

Gene nameNGFI-A binding protein 1
SynonymsNA
Gene typeprotein_coding
UniProtAcc

NA


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Dataset with differentially expressed gene: NAB1

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

PMID34715028

patientsTumor tissueKidney cancerClear cell renal cell carcinoma (ccRCC)ImmunotherapynivolumabpostCD8+ T cells-0.5077730.00e+00

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Expression of NAB1 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to NAB1

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating NAB1

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
NAB1hsa-miR-4687-3p86.7859NM_001321312
NAB1hsa-miR-513a-3p86.423NM_001321312
NAB1hsa-miR-513c-3p86.423NM_001321312
NAB1hsa-miR-3606-3p86.2067NM_001321312
NAB1hsa-miR-5011-5p85.8738NM_001321312
NAB1hsa-miR-6842-3p85.4764NM_001321312
NAB1hsa-miR-212-5p85.1052NM_001321312
NAB1hsa-miR-493-5p84.5993NM_001321312
NAB1hsa-miR-426284.1132NM_001321312
NAB1hsa-miR-302c-5p83.8994NM_001321312
NAB1hsa-miR-3064-3p83.7511NM_001321312
NAB1hsa-miR-182783.6185NM_001321312
NAB1hsa-miR-1-3p82.6993NM_001321312
NAB1hsa-miR-20682.6993NM_001321312
NAB1hsa-miR-61382.6993NM_001321312
NAB1hsa-miR-453482.5828NM_001321312
NAB1hsa-miR-374a-3p82.3718NM_001321312
NAB1hsa-miR-1251-3p82.2565NM_001321312
NAB1hsa-miR-181c-5p82.0126NM_001321312
NAB1hsa-miR-181d-5p82.0126NM_001321312
NAB1hsa-miR-181a-5p82.0126NM_001321312
NAB1hsa-miR-181b-5p82.0126NM_001321312
NAB1hsa-miR-4477a81.4448NM_001321312
NAB1hsa-miR-5692a81.3042NM_001321312
NAB1hsa-miR-200b-3p80.8965NM_001321312
NAB1hsa-miR-200c-3p80.8965NM_001321312
NAB1hsa-miR-42980.8965NM_001321312
NAB1hsa-miR-125780.8037NM_001321312
NAB1hsa-miR-6719-3p80.5885NM_001321312
NAB1hsa-miR-548g-3p80.068NM_001321312
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Motifs and transcription factors (TFs) regulating NAB1

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
NAB1jaspar__MA0604.1ATF1 (inferredBy_Orthology).
NAB1taipale_cyt_meth__CREB1_NRTGACGTN_eDBD_reprCREB1 (directAnnotation).
NAB1cisbp__M04023CREB1 (directAnnotation).
NAB1dbtfbs__GMEB2_HepG2_ENCSR745VSQ_merged_N1GMEB2 (directAnnotation).
NAB1metacluster_111.3ATF1; ATF3; CREB1; CREB1; CREB1; CREB1; CREB1; CREM; CREM; CREM; CREM; E4F1; E4F1 (directAnnotation). CREB1; CREB1; CREM; JDP2 (inferredBy_Orthology).
NAB1transfac_pro__M01088DEAF1 (inferredBy_Orthology).
NAB1hocomoco__GMEB2_HUMAN.H11MO.0.DGMEB2 (directAnnotation).
NAB1metacluster_111.5E4F1; E4F1 (directAnnotation).
NAB1hdpi__NRLNRL (directAnnotation).
NAB1transfac_pro__M08803CREM (directAnnotation).
NAB1transfac_pro__M01090SMAD9 (inferredBy_Orthology).
NAB1taipale_tf_pairs__ETV5_HES7_CCGGAANNNNNNCACGTG_CAPETV5; HES7 (directAnnotation).
NAB1hdpi__RARARARA (directAnnotation).
NAB1jaspar__MA0185.1DEAF1 (inferredBy_Orthology).
NAB1homer__GGCGGGAARN_E2F6E2F6 (directAnnotation).
NAB1transfac_pro__M04893TAF1 (directAnnotation).
NAB1swissregulon__hs__GMEB2GMEB2 (directAnnotation).
NAB1hdpi__FEZF2FEZF2 (directAnnotation).
NAB1hocomoco__FEV_HUMAN.H11MO.0.BFEV (directAnnotation).
NAB1hdpi__HIP2UBE2K (directAnnotation).
NAB1flyfactorsurvey__Mad_FlyReg_FBgn0011648SMAD9 (inferredBy_Orthology).
NAB1metacluster_67.2ZNF501 (directAnnotation). ACAA1; E2F2; E2F2; E2F3; E2F3; FOXN4 (inferredBy_Orthology).
NAB1cisbp__M00775ZBTB1 (inferredBy_Orthology).
NAB1hdpi__PDLIM5PDLIM5 (directAnnotation).
NAB1transfac_pro__M03846SMAD5 (directAnnotation).
NAB1metacluster_61.1DEAF1; DEAF1 (directAnnotation).
NAB1hdpi__HTATIP2HTATIP2 (directAnnotation).
NAB1transfac_pro__M00938E2F1 (directAnnotation).
NAB1transfac_pro__M04817ZBTB33 (directAnnotation).
NAB1transfac_pro__M01199TRIM28 (directAnnotation).
NAB1metacluster_131.7EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR2; EGR2; EGR2; EGR2; EGR2; EGR2; EGR3; EGR3; EGR3; EGR3; EGR3; EGR3; EGR4; EGR4; WT1 (directAnnotation). EGR1; EGR1; EGR1; EGR1; EGR1; EGR2; EGR2; EGR2; EGR2; EGR2; EGR3; EGR3; WT1; ZBTB43; ZBTB43; ZBTB43; ZBTB43; ZBTB5; ZBTB5; ZBTB5; ZBTB5; ZBTB7A; ZBTB7A; ZBTB7A; ZBTB7A; ZNF367; ZNF367; ZNF367; ZNF367; ZNF740; ZNF740; ZNF740; ZNF740 (inferredBy_Orthology).
NAB1metacluster_15.1E2F4; E2F4; E2F4; E2F4; E2F7; ZFP69B (directAnnotation). E2F4 (inferredBy_Orthology).
NAB1transfac_pro__M01240GTF2IRD1 (directAnnotation).
NAB1transfac_pro__M00803E2F1; E2F3; E2F4; TFDP1 (directAnnotation).
NAB1hdpi__OTUD4OTUD4 (directAnnotation).
NAB1transfac_pro__M02844BCL6B (inferredBy_Orthology).
NAB1metacluster_3.11SP1; SP1; SP2; SP3; SP3; SP4 (directAnnotation).
NAB1transfac_pro__M07436WT1 (directAnnotation).
NAB1homer__NANTGCSGCA_Zfp57ZFP57 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."