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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: LSM8

Summary for LSM8

Gene informationGene symbol

LSM8

Ensembl ID

ENSG00000128534

Entrez ID

51691

Gene nameLSM8 homolog, U6 small nuclear RNA associated
SynonymsYJR022W
Gene typeprotein_coding
UniProtAcc

NA


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Dataset with differentially expressed gene: LSM8

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE189460

patientsBone marrow aspirateMultiple myelomaMultiple myeloma (MM)Targeted therapybortezomib + melphalan + prednisolonepreMalignant cells0.2768310.00e+00

GSE164897_VemCob

A375 cell lineCell lineMelanomaBRAFV600E-mutant melanomaTargeted therapyvemurafenib + combimetinibNAMalignant cells0.4138890.00e+00

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Expression of LSM8 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to LSM8

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating LSM8

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
LSM8hsa-miR-805484.958NM_016200
LSM8hsa-miR-5196-3p84.7868NM_016200
LSM8hsa-miR-10523-5p84.7813NM_016200
LSM8hsa-miR-616-5p84.1505NM_016200
LSM8hsa-miR-371b-5p84.1505NM_016200
LSM8hsa-miR-373-5p84.1505NM_016200
LSM8hsa-miR-664b-3p84.143NM_016200
LSM8hsa-miR-3613-3p83.5632NM_016200
LSM8hsa-miR-4778-5p83.5445NM_016200
LSM8hsa-miR-1250-3p83.0045NM_016200
LSM8hsa-miR-3180-5p82.9276NM_016200
LSM8hsa-miR-518d-5p82.6732NM_016200
LSM8hsa-miR-518e-5p82.6732NM_016200
LSM8hsa-miR-523-5p82.6732NM_016200
LSM8hsa-miR-519a-5p82.6732NM_016200
LSM8hsa-miR-520c-5p82.6732NM_016200
LSM8hsa-miR-518f-5p82.6732NM_016200
LSM8hsa-miR-519c-5p82.6732NM_016200
LSM8hsa-miR-526a-5p82.6732NM_016200
LSM8hsa-miR-519b-5p82.6732NM_016200
LSM8hsa-miR-522-5p82.6732NM_016200
LSM8hsa-miR-376a-3p82.4812NM_016200
LSM8hsa-miR-376b-3p82.4812NM_016200
LSM8hsa-miR-473982.3501NM_016200
LSM8hsa-miR-132182.3501NM_016200
LSM8hsa-miR-4756-5p82.3501NM_016200
LSM8hsa-miR-1213282.3256NM_016200
LSM8hsa-miR-9-3p82.2314NM_016200
LSM8hsa-miR-499a-3p82.2057NM_016200
LSM8hsa-miR-499b-3p82.2057NM_016200
LSM8hsa-miR-4717-5p82.1087NM_016200
LSM8hsa-miR-15b-3p82.1061NM_016200
LSM8hsa-miR-3126-3p81.7484NM_016200
LSM8hsa-miR-1468-3p81.5088NM_016200
LSM8hsa-miR-16-1-3p81.4252NM_016200
LSM8hsa-miR-548ba81.059NM_016200
LSM8hsa-miR-548ag81.059NM_016200
LSM8hsa-miR-548ai81.059NM_016200
LSM8hsa-miR-570-5p81.059NM_016200
LSM8hsa-miR-511-3p80.8891NM_016200
LSM8hsa-miR-1-5p80.3741NM_016200
LSM8hsa-miR-6882-5p80.1274NM_016200
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Motifs and transcription factors (TFs) regulating LSM8

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
LSM8taipale_tf_pairs__ETS2_RCCGGAAGTG_HTETS2 (directAnnotation).
LSM8swissregulon__hs__ETV6ETV6 (directAnnotation).
LSM8taipale_tf_pairs__MEIS1_ELF1_NTGCCGGAAGTN_CAP_reprELF1; MEIS1 (directAnnotation).
LSM8jaspar__MA1483.2ELF2 (directAnnotation).
LSM8hdpi__TP73TP73 (directAnnotation).
LSM8metacluster_191.2ELK4; NR2C2; NR2C2; NR2C2; NR2C2 (directAnnotation). GABPA (inferredBy_Orthology).
LSM8swissregulon__hs__ELF2ELF2 (directAnnotation).
LSM8metacluster_191.3EHF; ELF1; ELF1; ELF1; ELF4; ELK1; ELK3; ELK3; ELK4; ELK4; ERF; ETS1; ETS2; ETV3; ETV4; ETV5; FEV; FEV; FLI1; FLI1; GABPA; GABPA; GABPA; GABPA; GABPA; GABPA; SPDEF; ZNF200 (directAnnotation). ELK1; ELK1; ELK3; ELK3; ELK4; ELK4; ETV1; ETV1; ETV4; ETV4; ETV4; ETV5; GABPA; GABPA (inferredBy_Orthology).
LSM8taipale_tf_pairs__ELF2_NATGCGGAAGTR_HTELF2 (directAnnotation).
LSM8metacluster_166.4BCLAF1; EHF; ELF1; ELF1; ELF1; ELF1; ELF1; ELF1; ELF2; ELF2; ELF4; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK3; ELK3; ELK3; ELK3; ELK4; ERG; ERG; ERG; ERG; ETS1; ETS1; ETS1; ETS1; ETS1; ETV1; ETV1; ETV1; ETV1; ETV2; ETV3; ETV4; ETV4; ETV4; ETV4; ETV4; ETV5; ETV7; FEV; FEV; FLI1; FLI1; FLI1; FLI1; GABPA; GABPA; GABPA; GABPA; GABPA; GABPA; GABPB1; GATAD1; PHF20; ZBTB25; ZBTB40 (directAnnotation). EHF; ELF1; ELF1; ELF3; ELF5; ELK3; ELK4; ERG; ETS1; ETV1; ETV2; ETV4; FLI1; GABPA; GABPA (inferredBy_Orthology).
LSM8cisbp__M02645ETS1 (directAnnotation).
LSM8taipale_tf_pairs__ETV5_EVX1_RSCGGWAATKR_CAPETV5; EVX1 (directAnnotation).
LSM8hdpi__FLI1FLI1 (directAnnotation).
LSM8cisbp__M08198ELF1 (directAnnotation).
LSM8metacluster_166.2ELK4; ETS1; ETS1; ETV1; ETV3; ETV4; ETV5; ETV7 (directAnnotation). GABPA (inferredBy_Orthology).
LSM8metacluster_138.2ELF1; ELF2; ELF4; ELK1; ELK1; ELK1; ELK1; ELK3; ELK4; ELK4; ELK4; ELK4; ELK4; ELK4; ELK4; ERF; ERG; ERG; ERG; ERG; ETS1; ETS1; ETS2; ETS2; ETV1; ETV1; ETV1; ETV2; ETV3; ETV4; ETV5; ETV5; FEV; FLI1; FLI1; GABPA; GABPA; KMT2B; SPDEF; SPDEF; SPDEF; ZBTB11; ZNF518A; ZNF580 (directAnnotation). ELF1; ELF2; ELF4; ELK1; ELK1; ELK3; ELK4; ERG; ETS1; ETS2; ETV1; ETV2; ETV3; ETV4; ETV5; FEV; FLI1; FLI1; GABPA; SPDEF; SPDEF (inferredBy_Orthology).
LSM8taipale_tf_pairs__ETV2_DRGX_RSCGGAWRYATTA_CAP_reprDRGX; ETV2 (directAnnotation).
LSM8transfac_pro__M06305ZNF583 (inferredBy_Orthology).
LSM8transfac_pro__M05697ZNF235 (directAnnotation).
LSM8hdpi__ETV4ETV4 (directAnnotation).
LSM8metacluster_15.4SMAD6 (directAnnotation). SMAD6 (inferredBy_Orthology).
LSM8jaspar__MA1933.1SREBF2 (directAnnotation).
LSM8metacluster_174.3MBD2; NFYA; NFYB; NFYC; PBX3 (directAnnotation).
LSM8transfac_pro__M05711ZNF37A (directAnnotation).
LSM8metacluster_15.1E2F4; E2F4; E2F4; E2F4; E2F7; ZFP69B (directAnnotation). E2F4 (inferredBy_Orthology).
LSM8hdpi__HIP2UBE2K (directAnnotation).
LSM8hdpi__NRLNRL (directAnnotation).
LSM8transfac_pro__M00430E2F1 (directAnnotation).
LSM8metacluster_197.3E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F1; E2F2; E2F2; E2F2; E2F2; E2F2; E2F3; E2F3; E2F3; E2F3; E2F3; E2F3; E2F3; E2F4; E2F4; E2F4; E2F4; E2F4; E2F4; E2F4; E2F4; E2F4; E2F4; E2F5; E2F5; E2F5; E2F5; E2F6; E2F7; E2F7; E2F7; RB1; TFDP1; TFDP1; TFDP1; TFDP1; TFDP1; TFDP1; TFDP1; TFDP2; TFDP2 (directAnnotation).
LSM8transfac_pro__M01090SMAD9 (inferredBy_Orthology).
LSM8kznf__ZNF777_Imbeault2017_RP_ChIP-seqZNF777 (directAnnotation).
LSM8metacluster_7.13ZFX (directAnnotation).
LSM8jaspar__MA1122.1TFDP1 (directAnnotation).
LSM8kznf__ZNF571_Imbeault2017_OM_RCADEZNF571 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."