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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: KPNA3

Summary for KPNA3

Gene informationGene symbol

KPNA3

Ensembl ID

ENSG00000102753

Entrez ID

3839

Gene namekaryopherin subunit alpha 3
SynonymshSRP1|IPOA4|SRP1gamma|SRP4
Gene typeprotein_coding
UniProtAcc

O00505


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Dataset with differentially expressed gene: KPNA3

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells0.4364779.99e-37

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Expression of KPNA3 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to KPNA3

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating KPNA3

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
KPNA3hsa-miR-545-5p88.4989NM_002267
KPNA3hsa-miR-219a-1-3p88.4927NM_002267
KPNA3hsa-miR-590-3p88.3151NM_002267
KPNA3hsa-miR-4799-5p88.2368NM_002267
KPNA3hsa-miR-570088.2198NM_002267
KPNA3hsa-miR-331-5p88.2182NM_002267
KPNA3hsa-miR-186-5p88.0295NM_002267
KPNA3hsa-miR-1251-5p87.9351NM_002267
KPNA3hsa-miR-126187.6402NM_002267
KPNA3hsa-miR-542-3p87.0861NM_002267
KPNA3hsa-miR-4793-3p87.0382NM_002267
KPNA3hsa-miR-445686.6061NM_002267
KPNA3hsa-miR-195-5p86.2076NM_002267
KPNA3hsa-miR-15b-5p86.2076NM_002267
KPNA3hsa-miR-503-5p86.2076NM_002267
KPNA3hsa-miR-15a-5p86.2076NM_002267
KPNA3hsa-miR-16-5p86.2076NM_002267
KPNA3hsa-miR-888-5p86.0843NM_002267
KPNA3hsa-miR-1910-3p85.8358NM_002267
KPNA3hsa-let-7f-1-3p85.7388NM_002267
KPNA3hsa-let-7b-3p85.7388NM_002267
KPNA3hsa-miR-98-3p85.7388NM_002267
KPNA3hsa-let-7a-3p85.7388NM_002267
KPNA3hsa-miR-797385.6642NM_002267
KPNA3hsa-miR-998585.545NM_002267
KPNA3hsa-miR-27b-3p85.545NM_002267
KPNA3hsa-miR-27a-3p85.545NM_002267
KPNA3hsa-miR-10524-5p84.1012NM_002267
KPNA3hsa-miR-6859-5p83.3008NM_002267
KPNA3hsa-miR-5582-5p82.6128NM_002267
KPNA3hsa-miR-518682.0367NM_002267
KPNA3hsa-miR-3160-5p81.8637NM_002267
KPNA3hsa-miR-548an81.5683NM_002267
KPNA3hsa-miR-2467-5p81.1307NM_002267
KPNA3hsa-miR-551b-5p80.9621NM_002267
KPNA3hsa-miR-548t-5p80.7775NM_002267
KPNA3hsa-miR-548az-5p80.7775NM_002267
KPNA3hsa-miR-5189-3p80.6617NM_002267
KPNA3hsa-miR-891a-3p80.3488NM_002267
KPNA3hsa-miR-20a-5p80.2932NM_002267
KPNA3hsa-miR-106b-5p80.2932NM_002267
KPNA3hsa-miR-427580.2285NM_002267
KPNA3hsa-miR-3130-5p80.1785NM_002267
KPNA3hsa-miR-127-5p80.042NM_002267
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Motifs and transcription factors (TFs) regulating KPNA3

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
KPNA3metacluster_55.3E2F6; EGR1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; NRF1; ZBTB2; ZSCAN10 (directAnnotation). NFE2L1; NRF1; NRF1; NRF1 (inferredBy_Orthology).
KPNA3dbtfbs__GMEB1_K562_ENCSR928KOR_merged_N1GMEB1 (directAnnotation).
KPNA3taipale_tf_pairs__GCM1_SPDEF_RTRSKGGCGGANNNNNNATCCNNN_CAP_reprGCM1; SPDEF (directAnnotation).
KPNA3taipale_cyt_meth__ZNF385D_NCGTCGCGACGN_eDBD_methZNF385D (directAnnotation).
KPNA3transfac_pro__M00652NRF1 (directAnnotation).
KPNA3transfac_pro__M04918EGR1 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."