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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: KPNA1

Summary for KPNA1

Gene informationGene symbol

KPNA1

Ensembl ID

ENSG00000114030

Entrez ID

3836

Gene namekaryopherin subunit alpha 1
SynonymsIPOA5|NPI-1|RCH2|SRP1
Gene typeprotein_coding
UniProtAcc

P52294


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Dataset with differentially expressed gene: KPNA1

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE108397

451Lu cell lineCell lineMelanomaMelanomaTargeted therapyPLX-4720NAMalignant cells-0.2634584.08e-28

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Expression of KPNA1 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to KPNA1

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating KPNA1

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
KPNA1hsa-miR-57786.3381NM_002264
KPNA1hsa-miR-427686.2614NM_002264
KPNA1hsa-miR-6516-5p86.1736NM_002264
KPNA1hsa-miR-383-3p86.0829NM_002264
KPNA1hsa-miR-568086.0686NM_002264
KPNA1hsa-miR-520h85.3956NM_002264
KPNA1hsa-miR-520g-3p85.3956NM_002264
KPNA1hsa-miR-64985.0819NM_002264
KPNA1hsa-miR-181d-5p84.8293NM_002264
KPNA1hsa-miR-181a-5p84.8293NM_002264
KPNA1hsa-miR-181c-5p84.8293NM_002264
KPNA1hsa-miR-181b-5p84.8293NM_002264
KPNA1hsa-miR-6508-5p84.7162NM_002264
KPNA1hsa-miR-33a-3p84.3596NM_002264
KPNA1hsa-miR-392384.3374NM_002264
KPNA1hsa-miR-548c-3p84.292NM_002264
KPNA1hsa-miR-548p84.2687NM_002264
KPNA1hsa-miR-429184.0033NM_002264
KPNA1hsa-miR-616583.8219NM_002264
KPNA1hsa-miR-806783.5283NM_002264
KPNA1hsa-miR-548n83.4433NM_002264
KPNA1hsa-miR-93483.1535NM_002264
KPNA1hsa-miR-10393-5p83.0019NM_002264
KPNA1hsa-miR-186-5p82.8535NM_002264
KPNA1hsa-miR-525-5p82.8252NM_002264
KPNA1hsa-miR-520a-5p82.8252NM_002264
KPNA1hsa-miR-4659a-3p82.3145NM_002264
KPNA1hsa-miR-4659b-3p82.3145NM_002264
KPNA1hsa-miR-549a-3p82.2352NM_002264
KPNA1hsa-miR-580-3p81.995NM_002264
KPNA1hsa-miR-378a-5p81.7469NM_002264
KPNA1hsa-miR-548e-5p81.6845NM_002264
KPNA1hsa-miR-511-3p81.6635NM_002264
KPNA1hsa-miR-6780b-3p81.4656NM_002264
KPNA1hsa-miR-144-3p81.4331NM_002264
KPNA1hsa-miR-63481.4001NM_002264
KPNA1hsa-miR-3065-5p81.3892NM_002264
KPNA1hsa-miR-3619-5p81.339NM_002264
KPNA1hsa-miR-5571-5p81.326NM_002264
KPNA1hsa-miR-4685-3p81.2573NM_002264
KPNA1hsa-miR-428781.2573NM_002264
KPNA1hsa-miR-1213681.2506NM_002264
KPNA1hsa-miR-545-5p81.1953NM_002264
KPNA1hsa-miR-143-5p81.0594NM_002264
KPNA1hsa-miR-7151-3p80.7564NM_002264
KPNA1hsa-miR-392980.2153NM_002264
KPNA1hsa-miR-447880.2153NM_002264
KPNA1hsa-miR-214-3p80.1935NM_002264
KPNA1hsa-miR-76180.1935NM_002264
KPNA1hsa-miR-475180.0683NM_002264
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Motifs and transcription factors (TFs) regulating KPNA1

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
KPNA1metacluster_7.13ZFX (directAnnotation).
KPNA1cisbp__M01863ZNF711 (inferredBy_Orthology).
KPNA1transfac_pro__M05578ZFP92 (inferredBy_Orthology).
KPNA1metacluster_151.2ZNF23 (directAnnotation).
KPNA1metacluster_170.2KLF1; KLF10; KLF10; KLF11; KLF11; KLF11; KLF12; KLF12; KLF14; KLF15; KLF17; KLF2; KLF5; KLF7; KLF7; KLF8; MAZ; MAZ; PATZ1; SP1; SP1; SP1; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP4; SP4; SP5; SP6; SP7; SP8; SP9; ZNF281 (directAnnotation). E2F1; E2F4; KLF10; KLF13; KLF14; KLF17; KLF2; KLF7; SP1; SP1; SP3; SP4; SP5; SP6; SP7 (inferredBy_Orthology).
KPNA1transfac_pro__M05479ZNF580 (directAnnotation).
KPNA1metacluster_155.23BCL11B; ZNF711; ZNF711 (directAnnotation). ZFY (inferredBy_Orthology).
KPNA1kznf__ZNF783_Imbeault2017_OM_MEMEZNF783 (directAnnotation).
KPNA1metacluster_144.3ZNF704; ZNF704 (directAnnotation).
KPNA1metacluster_182.10ZFX (directAnnotation).
KPNA1hdpi__ETV4ETV4 (directAnnotation).
KPNA1jaspar__MA0748.2YY2 (directAnnotation).
KPNA1transfac_pro__M05628ZNF735 (directAnnotation).
KPNA1homer__TWVGGTCCGC_HINFPHINFP (directAnnotation).
KPNA1metacluster_135.10MBD2; MBD2; MECP2; MECP2 (directAnnotation).
KPNA1taipale_tf_pairs__GCM1_SPDEF_RTRSKGGCGGANNNNNNATCCNNN_CAP_reprGCM1; SPDEF (directAnnotation).
KPNA1jaspar__MA0079.5SP1 (directAnnotation).
KPNA1taipale_tf_pairs__GCM1_ETV1_RTRNNGGCGGAAGTN_CAPETV1; GCM1 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."