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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target

Gene: KCNMA1

Summary for KCNMA1

Gene informationGene symbol

KCNMA1

Ensembl ID

ENSG00000156113

Entrez ID

3778

Gene namepotassium calcium-activated channel subfamily M alpha 1
SynonymsKCa1.1|mSLO1|SLO
Gene typeprotein_coding
UniProtAcc

NA


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Dataset with differentially expressed gene: KCNMA1

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE186960

Panc1 cell lineCell linePancreatic cancerPancreatic ductal adenocarcinoma (PDAC)ChemotherapygemcitabineNAMalignant cells-0.8299080.00e+00

GSE138267

CDXTumor tissueLung cancerSmall cell lung cancer (SCLC)ChemotherapyNANAMalignant cells0.976580.00e+00

GSE169246_PacTissue

patientsTumor tissueBreast cancerAdvanced triple-negative breast cancer (TNBC)ChemotherapypaclitaxelpreMono/Macro0.3920680.00e+00

GSE168668

LNCaP cell lineCell lineProstate cancerProstate cancerTargeted therapyenzalutamideNAMalignant cells-0.7367690.00e+00

GSE131984_JQ1

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1NAMalignant cells-0.5304415.21e-30

GSE131984_JQ1Pac

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + paclitaxelNAMalignant cells-0.7070081.07e-34

GSE131984_JQ1Pal

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + palbociclibNAMalignant cells-0.3794713.32e-08

GSE131984_Pal

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapypalbociclibNAMalignant cells-0.5164971.74e-17

GSE108397

451Lu cell lineCell lineMelanomaMelanomaTargeted therapyPLX-4720NAMalignant cells0.9002390.00e+00

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Expression of KCNMA1 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to KCNMA1

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating KCNMA1

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
KCNMA1hsa-miR-323a-5p85.1297NM_001322837
KCNMA1hsa-miR-806184.923NM_001322838
KCNMA1hsa-miR-670-3p84.8159NM_001014797
KCNMA1hsa-miR-3136-3p84.5012NM_001322838
KCNMA1hsa-miR-676-5p83.7406NM_001322838
KCNMA1hsa-miR-5197-3p83.6665NM_001014797
KCNMA1hsa-miR-568383.2877NM_001014797
KCNMA1hsa-miR-7155-3p83.1051NM_001322838
KCNMA1hsa-miR-6716-5p83.0253NM_001014797
KCNMA1hsa-miR-808983.0181NM_001322837
KCNMA1hsa-miR-4700-5p83.0181NM_001322837
KCNMA1hsa-miR-4667-5p83.0181NM_001322837
KCNMA1hsa-miR-3529-3p82.5344NM_001322837
KCNMA1hsa-miR-54382.4052NM_001014797
KCNMA1hsa-miR-4639-3p82.2637NM_001322838
KCNMA1hsa-miR-7152-5p82.1579NM_001014797
KCNMA1hsa-miR-218-1-3p81.9361NM_001322838
KCNMA1hsa-let-7c-3p81.5792NM_001322838
KCNMA1hsa-miR-3121-5p81.5769NM_001322837
KCNMA1hsa-miR-570681.2434NM_001322838
KCNMA1hsa-miR-4782-5p81.2434NM_001322838
KCNMA1hsa-miR-6501-3p81.0427NM_001014797
KCNMA1hsa-miR-153-5p80.6609NM_001014797
KCNMA1hsa-miR-431480.6322NM_001322838
KCNMA1hsa-miR-4735-5p80.4643NM_001322837
KCNMA1hsa-miR-627-3p80.1769NM_001014797
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Motifs and transcription factors (TFs) regulating KCNMA1

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
KCNMA1taipale_tf_pairs__MEIS1_ELF1_NTGCCGGAAGTN_CAP_reprELF1; MEIS1 (directAnnotation).
KCNMA1swissregulon__hs__ELF2ELF2 (directAnnotation).
KCNMA1taipale_tf_pairs__ETV2_HOXA2_NCCGGAAGTMATTA_CAP_reprETV2; HOXA2 (directAnnotation).
KCNMA1cisbp__M00808MYPOP (inferredBy_Orthology).
KCNMA1taipale_tf_pairs__HOXB2_ELF1_SMGGAAGTMRTTA_CAPELF1; HOXB2 (directAnnotation).
KCNMA1metacluster_198.7AHR; ZBTB14; ZBTB14; ZBTB14 (directAnnotation).
KCNMA1jaspar__MA1957.1ELK1 (directAnnotation).
KCNMA1transfac_pro__M01219SP1 (directAnnotation). SP3 (inferredBy_Orthology).
KCNMA1transfac_pro__M07397ZNF148 (directAnnotation).
KCNMA1metacluster_131.7EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR1; EGR2; EGR2; EGR2; EGR2; EGR2; EGR2; EGR3; EGR3; EGR3; EGR3; EGR3; EGR3; EGR4; EGR4; WT1 (directAnnotation). EGR1; EGR1; EGR1; EGR1; EGR1; EGR2; EGR2; EGR2; EGR2; EGR2; EGR3; EGR3; WT1; ZBTB43; ZBTB43; ZBTB43; ZBTB43; ZBTB5; ZBTB5; ZBTB5; ZBTB5; ZBTB7A; ZBTB7A; ZBTB7A; ZBTB7A; ZNF367; ZNF367; ZNF367; ZNF367; ZNF740; ZNF740; ZNF740; ZNF740 (inferredBy_Orthology).
KCNMA1taipale_cyt_meth__ZNF281_NCCCCTCCCCCN_eDBD_methZNF281 (directAnnotation).
KCNMA1metacluster_3.11SP1; SP1; SP2; SP3; SP3; SP4 (directAnnotation).
KCNMA1homer__GGGGGGGG_MazMAZ (directAnnotation).
KCNMA1transfac_pro__M01175ZBTB7B (directAnnotation).
KCNMA1taipale_cyt_meth__ZNF460_NRMCGCCCCCCGN_eDBD_methZNF460 (directAnnotation).
KCNMA1tfdimers__MD00151CHURC1 (directAnnotation).
KCNMA1metacluster_3.7SP1; SP1; SP1; SP1; SP1; SP1; SP1; SP1; SP2; SP2; SP2; SP2; SP3; SP3; SP3; SP4; SP4; SP4; SP4; SP4; SP4; SP5 (directAnnotation).
KCNMA1metacluster_15.1E2F4; E2F4; E2F4; E2F4; E2F7; ZFP69B (directAnnotation). E2F4 (inferredBy_Orthology).
KCNMA1transfac_pro__M01303SP1 (directAnnotation).
KCNMA1swissregulon__hs__CHD1CHD1 (directAnnotation).
KCNMA1transfac_pro__M02089E2F3 (directAnnotation).
KCNMA1metacluster_3.14WT1; WT1 (directAnnotation).
KCNMA1metacluster_3.4SP1; SP2; SP2; SP3 (directAnnotation).
KCNMA1hocomoco__TYY2_HUMAN.H11MO.0.DYY2 (directAnnotation).
KCNMA1hocomoco__EGR4_HUMAN.H11MO.0.DEGR4 (directAnnotation).
KCNMA1metacluster_3.5KLF14; KLF15; KLF15; KLF16 (directAnnotation).
KCNMA1cisbp__M07938E2F1 (directAnnotation).
KCNMA1kznf__ZNF202_Imbeault2017_OM_MEMEZNF202 (directAnnotation).
KCNMA1transfac_pro__M07436WT1 (directAnnotation).
KCNMA1transfac_pro__M02281SP1 (directAnnotation).
KCNMA1kznf__ZNF730_Imbeault2017_RP_RCADEZNF730 (directAnnotation).
KCNMA1transfac_pro__M02898SMAD3 (directAnnotation).
KCNMA1transfac_public__M00491PATZ1 (directAnnotation).
KCNMA1transfac_pro__M07461KLF1; KLF10; KLF11; KLF12; KLF13; KLF15; KLF16; KLF17; KLF2; KLF3; KLF4; KLF5; KLF6; KLF7; KLF8; KLF9 (directAnnotation).
KCNMA1metacluster_141.6MZF1; TAF1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY2; YY2; ZFP42; ZFP42; ZFP42; ZFP42; ZFP42; ZFP42; ZNF597 (directAnnotation). TAF1; TAF1L (inferredBy_Orthology).
KCNMA1jaspar__MA0748.2YY2 (directAnnotation).
KCNMA1metacluster_166.2ELK4; ETS1; ETS1; ETV1; ETV3; ETV4; ETV5; ETV7 (directAnnotation). GABPA (inferredBy_Orthology).
KCNMA1swissregulon__hs__ELK1ELK1 (directAnnotation).
KCNMA1taipale_tf_pairs__ETV2_FOXO6_RCCGGATGTTKWN_CAPETV2; FOXO6 (directAnnotation).
KCNMA1metacluster_81.7CREB1 (directAnnotation).
KCNMA1metacluster_174.2CEBPZ; CEBPZ; DRAP1; FOS; FOXI1; FOXI1; HMGXB3; IRF3; NFYA; NFYA; NFYA; NFYA; NFYA; NFYA; NFYA; NFYA; NFYA; NFYB; NFYB; NFYB; NFYB; NFYB; NFYC; NFYC; NFYC; NFYC; NFYC; NFYC; NFYC; PBX3; PBX3; SP2 (directAnnotation). NFYA; NFYA; NFYC; PBX1; PBX3 (inferredBy_Orthology).
KCNMA1kznf__ZBTB14_Schmitges2016_RCADEZBTB14 (directAnnotation).
KCNMA1taipale_tf_pairs__E2F3_HES7_NNNNGCGCSNNNNNCACGTGNN_CAPE2F3; HES7 (directAnnotation).
KCNMA1taipale_cyt_meth__E2F2_NCGCGCGCGCM_eDBD_methE2F2 (directAnnotation).
KCNMA1transfac_pro__M00803E2F1; E2F3; E2F4; TFDP1 (directAnnotation).
KCNMA1transfac_pro__M04817ZBTB33 (directAnnotation).
KCNMA1metacluster_143.13ZBTB7A (directAnnotation).
KCNMA1tfdimers__MD00483ZBTB14 (directAnnotation).
KCNMA1cisbp__M00968MTF2 (directAnnotation).
KCNMA1jaspar__MA0535.1SMAD9 (inferredBy_Orthology).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.
Target nameDrug nameDrug IDDrug type
KCNMA1"Bendroflumethiazide"

DB00436

small molecule
KCNMA1"Chlorzoxazone"

DB00356

small molecule
KCNMA1"Dequalinium"

DB04209

small molecule
KCNMA1"Diazoxide"

DB01119

small molecule
KCNMA1"Halothane"

DB01159

small molecule
KCNMA1"Hydrochlorothiazide"

DB00999

small molecule
KCNMA1"Hydroflumethiazide"

DB00774

small molecule
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1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."