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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: GPM6B

Summary for GPM6B

Gene informationGene symbol

GPM6B

Ensembl ID

ENSG00000046653

Entrez ID

2824

Gene nameglycoprotein M6B
SynonymsM6B|MGC17150|MGC54284
Gene typeprotein_coding
UniProtAcc

Q13491


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Dataset with differentially expressed gene: GPM6B

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE140440

DU145 and PC cell linesCell lineProstate cancerProstate cancerChemotherapydocetaxelNAMalignant cells3.156472.60e-05

GSE108397

451Lu cell lineCell lineMelanomaMelanomaTargeted therapyPLX-4720NAMalignant cells0.2622911.07e-24

GSE115251

Kelly cell lineCell lineNeuroblastomaNeuroblastomaTargeted therapyTAE684NAMalignant cells-0.3294480.00e+00

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Expression of GPM6B in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to GPM6B

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating GPM6B

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
GPM6Bhsa-miR-664b-3p83.1021NM_001001994
GPM6Bhsa-miR-335-3p83.1NM_001001994
GPM6Bhsa-miR-132383.01NM_001001994
GPM6Bhsa-miR-548o-3p83.0048NM_001001994
GPM6Bhsa-miR-3121-5p82.9768NM_001001994
GPM6Bhsa-miR-548e-5p82.5499NM_001001994
GPM6Bhsa-miR-125b-2-3p82.4359NM_001001995
GPM6Bhsa-miR-155-5p82.2418NM_001001995
GPM6Bhsa-miR-477581.4416NM_001001994
GPM6Bhsa-miR-6806-3p81.1925NM_001001994
GPM6Bhsa-miR-3928-5p81.1925NM_001001994
GPM6Bhsa-miR-449681.1714NM_001001994
GPM6Bhsa-miR-875-3p81.1572NM_001001994
GPM6Bhsa-miR-7114-5p81.1033NM_001001994
GPM6Bhsa-miR-3692-5p80.8633NM_001001995
GPM6Bhsa-miR-64080.7416NM_001001995
GPM6Bhsa-miR-33a-3p80.671NM_001001994
GPM6Bhsa-miR-514b-5p80.3823NM_001001995
GPM6Bhsa-miR-513c-5p80.3823NM_001001995
GPM6Bhsa-miR-369080.3052NM_001001995
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Motifs and transcription factors (TFs) regulating GPM6B

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
GPM6Bmetacluster_166.4BCLAF1; EHF; ELF1; ELF1; ELF1; ELF1; ELF1; ELF1; ELF2; ELF2; ELF4; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK1; ELK3; ELK3; ELK3; ELK3; ELK4; ERG; ERG; ERG; ERG; ETS1; ETS1; ETS1; ETS1; ETS1; ETV1; ETV1; ETV1; ETV1; ETV2; ETV3; ETV4; ETV4; ETV4; ETV4; ETV4; ETV5; ETV7; FEV; FEV; FLI1; FLI1; FLI1; FLI1; GABPA; GABPA; GABPA; GABPA; GABPA; GABPA; GABPB1; GATAD1; PHF20; ZBTB25; ZBTB40 (directAnnotation). EHF; ELF1; ELF1; ELF3; ELF5; ELK3; ELK4; ERG; ETS1; ETV1; ETV2; ETV4; FLI1; GABPA; GABPA (inferredBy_Orthology).
GPM6Bmetacluster_191.3EHF; ELF1; ELF1; ELF1; ELF4; ELK1; ELK3; ELK3; ELK4; ELK4; ERF; ETS1; ETS2; ETV3; ETV4; ETV5; FEV; FEV; FLI1; FLI1; GABPA; GABPA; GABPA; GABPA; GABPA; GABPA; SPDEF; ZNF200 (directAnnotation). ELK1; ELK1; ELK3; ELK3; ELK4; ELK4; ETV1; ETV1; ETV4; ETV4; ETV4; ETV5; GABPA; GABPA (inferredBy_Orthology).
GPM6Btaipale_tf_pairs__ELK1_TBX21_TNRCACCGGAAGNN_CAP_reprELK1; TBX21 (directAnnotation).
GPM6Bhdpi__ETV4ETV4 (directAnnotation).
GPM6Btaipale_tf_pairs__ETV2_HOXA2_NCCGGAAGTMATTA_CAP_reprETV2; HOXA2 (directAnnotation).
GPM6Bdbtfbs__GMEB1_K562_ENCSR928KOR_merged_N1GMEB1 (directAnnotation).
GPM6Btaipale_tf_pairs__ETV5_EOMES_TNRCACCGGAWN_CAPEOMES; ETV5 (directAnnotation).
GPM6Btaipale_tf_pairs__HOXB2_ELK3_RSCGGAAGTMRTTA_CAPELK3; HOXB2 (directAnnotation).
GPM6Bjaspar__MA1483.2ELF2 (directAnnotation).
GPM6Bcisbp__M00808MYPOP (inferredBy_Orthology).
GPM6Btaipale_tf_pairs__ELK1_EOMES_TNRCACCGGAAGN_CAPELK1; EOMES (directAnnotation).
GPM6Btaipale_tf_pairs__ELK1_HOXA1_RCCGGAAGTAATTA_HTELK1; HOXA1 (directAnnotation).
GPM6Btaipale_tf_pairs__HOXB2_ELF1_SMGGAAGTMRTTA_CAPELF1; HOXB2 (directAnnotation).
GPM6Bcisbp__M08198ELF1 (directAnnotation).
GPM6Btaipale_cyt_meth__ZBTB2_NTTTMCGGTWAN_eDBDZBTB2 (directAnnotation).
GPM6Bmetacluster_198.7AHR; ZBTB14; ZBTB14; ZBTB14 (directAnnotation).
GPM6Btaipale_tf_pairs__ERF_HES7_NCCGGAANNNNNNCACGYGNN_CAP_reprERF; HES7 (directAnnotation).
GPM6Bmetacluster_138.2ELF1; ELF2; ELF4; ELK1; ELK1; ELK1; ELK1; ELK3; ELK4; ELK4; ELK4; ELK4; ELK4; ELK4; ELK4; ERF; ERG; ERG; ERG; ERG; ETS1; ETS1; ETS2; ETS2; ETV1; ETV1; ETV1; ETV2; ETV3; ETV4; ETV5; ETV5; FEV; FLI1; FLI1; GABPA; GABPA; KMT2B; SPDEF; SPDEF; SPDEF; ZBTB11; ZNF518A; ZNF580 (directAnnotation). ELF1; ELF2; ELF4; ELK1; ELK1; ELK3; ELK4; ERG; ETS1; ETS2; ETV1; ETV2; ETV3; ETV4; ETV5; FEV; FLI1; FLI1; GABPA; SPDEF; SPDEF (inferredBy_Orthology).
GPM6Bjaspar__MA1957.1ELK1 (directAnnotation).
GPM6Bhocomoco__MNX1_HUMAN.H11MO.0.DMNX1 (directAnnotation).
GPM6Bjaspar__MA1106.1HIF1A (directAnnotation).
GPM6Bkznf__ZNF594_Schmitges2016_RCADEZNF594 (directAnnotation).
GPM6Bmetacluster_195.2EGR2; KLF10; KLF10; KLF11; KLF11; KLF11; KLF13; KLF13; KLF13; KLF13; KLF13; KLF14; KLF14; KLF14; KLF14; KLF14; KLF15; KLF15; KLF16; KLF3; KLF8; KLF9; KLF9; KLF9; SP1; SP1; SP1; SP3; SP3; SP4; SP8; SP8; SP8; SP9; SP9 (directAnnotation). EGR1; KLF1; KLF12; KLF13; KLF14; KLF14; KLF14; KLF14; KLF14; KLF14; KLF16; KLF17; KLF17; KLF17; KLF17; KLF18; KLF18; KLF18; KLF18; KLF18; KLF18; KLF2; KLF2; KLF2; KLF3; KLF4; KLF5; KLF5; KLF5; KLF6; KLF7; KLF7; KLF8; KLF9; SP1; SP3; SP4; SP4; SP5; SP5; SP5; SP6; SP7; SP8; SP9 (inferredBy_Orthology).
GPM6Bhocomoco__KLF13_HUMAN.H11MO.0.DKLF13 (directAnnotation).
GPM6Bkznf__ZBTB14_Schmitges2016_RCADEZBTB14 (directAnnotation).
GPM6Btransfac_pro__M04617ZBTB7A (directAnnotation).
GPM6Bmetacluster_3.5KLF14; KLF15; KLF15; KLF16 (directAnnotation).
GPM6Btaipale_cyt_meth__ZNF460_NRMCGCCCCCCGN_eDBD_methZNF460 (directAnnotation).
GPM6Btaipale_cyt_meth__E2F2_NCGCGCGCGCM_eDBD_methE2F2 (directAnnotation).
GPM6Btransfac_pro__M07387ZBTB7A (directAnnotation).
GPM6Btransfac_pro__M07436WT1 (directAnnotation).
GPM6Btransfac_pro__M07461KLF1; KLF10; KLF11; KLF12; KLF13; KLF15; KLF16; KLF17; KLF2; KLF3; KLF4; KLF5; KLF6; KLF7; KLF8; KLF9 (directAnnotation).
GPM6Btransfac_pro__M00716ZBTB14 (directAnnotation).
GPM6Bswissregulon__hs__CHD1CHD1 (directAnnotation).
GPM6Bhdpi__HIP2UBE2K (directAnnotation).
GPM6Bmetacluster_170.2KLF1; KLF10; KLF10; KLF11; KLF11; KLF11; KLF12; KLF12; KLF14; KLF15; KLF17; KLF2; KLF5; KLF7; KLF7; KLF8; MAZ; MAZ; PATZ1; SP1; SP1; SP1; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP4; SP4; SP5; SP6; SP7; SP8; SP9; ZNF281 (directAnnotation). E2F1; E2F4; KLF10; KLF13; KLF14; KLF17; KLF2; KLF7; SP1; SP1; SP3; SP4; SP5; SP6; SP7 (inferredBy_Orthology).
GPM6Btransfac_pro__M04893TAF1 (directAnnotation).
GPM6Btransfac_pro__M03876ZBTB33 (directAnnotation).
GPM6Bmetacluster_15.2E2F1; E2F1; E2F1; E2F1; E2F1; E2F3; E2F4; E2F4; E2F4; E2F6; E2F6; E2F6; E2F6; E2F6; E2F6; E2F6; E2F7; TFDP1; TFDP2; ZNF566; ZNF566; ZNF574 (directAnnotation). E2F3; E2F3; E2F4 (inferredBy_Orthology).
GPM6Bmetacluster_133.1ZNF304; ZNF304; ZSCAN22 (directAnnotation).
GPM6Bkznf__ZNF441_Imbeault2017_RP_RCADEZNF441 (directAnnotation).
GPM6Btransfac_pro__M01219SP1 (directAnnotation). SP3 (inferredBy_Orthology).
GPM6Bmetacluster_3.7SP1; SP1; SP1; SP1; SP1; SP1; SP1; SP1; SP2; SP2; SP2; SP2; SP3; SP3; SP3; SP4; SP4; SP4; SP4; SP4; SP4; SP5 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."