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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene (This gene does not contain this module)

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: UBE3C

Summary for UBE3C

Gene informationGene symbol

UBE3C

Ensembl ID

ENSG00000009335

Entrez ID

9690

Gene nameubiquitin protein ligase E3C
SynonymsKIAA0010|KIAA10
Gene typeprotein_coding
UniProtAcc

Q15386


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Dataset with differentially expressed gene: UBE3C

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE186960

Panc1 cell lineCell linePancreatic cancerPancreatic ductal adenocarcinoma (PDAC)ChemotherapygemcitabineNAMalignant cells0.307673.06e-26

GSE139386

H3122 cell lineCell lineLung cancerEML4-ALK fusion-positive non-small cell lung cancer (NSCLC)Targeted therapyceritinibNAMalignant cells-0.3267030.00e+00

GSE131984_JQ1Pal

SUM159 cell lineCell lineBreast cancerTriple-negative breast cancer (TNBC)Targeted therapyJQ1 + palbociclibNAMalignant cells0.3088191.76e-14

GSE108397

451Lu cell lineCell lineMelanomaMelanomaTargeted therapyPLX-4720NAMalignant cells-0.3488830.00e+00

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells-0.4815560.00e+00

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Expression of UBE3C in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to UBE3C

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.

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MicroRNAs (miRNA) regulating UBE3C

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
UBE3Chsa-miR-9-5p97.6697NM_014671
UBE3Chsa-miR-471997.4513NM_014671
UBE3Chsa-miR-659-3p95.6989NM_014671
UBE3Chsa-let-7a-3p95.2303NM_014671
UBE3Chsa-let-7f-1-3p95.2303NM_014671
UBE3Chsa-miR-98-3p95.2303NM_014671
UBE3Chsa-let-7b-3p95.2303NM_014671
UBE3Chsa-miR-548e-5p95.0918NM_014671
UBE3Chsa-miR-137-3p94.1197NM_014671
UBE3Chsa-miR-135b-5p94.0456NM_014671
UBE3Chsa-miR-135a-5p94.0456NM_014671
UBE3Chsa-miR-316393.7817NM_014671
UBE3Chsa-miR-5197-3p92.5353NM_014671
UBE3Chsa-miR-6835-3p91.8782NM_014671
UBE3Chsa-miR-548c-3p91.1684NM_014671
UBE3Chsa-miR-106b-5p91.0299NM_014671
UBE3Chsa-miR-20a-5p91.0299NM_014671
UBE3Chsa-miR-4668-5p90.829NM_014671
UBE3Chsa-miR-519d-3p90.3847NM_014671
UBE3Chsa-miR-106a-5p90.3847NM_014671
UBE3Chsa-miR-526b-3p90.3847NM_014671
UBE3Chsa-miR-93-5p90.3847NM_014671
UBE3Chsa-miR-17-5p90.3847NM_014671
UBE3Chsa-miR-20b-5p90.3847NM_014671
UBE3Chsa-miR-4795-3p90.377NM_014671
UBE3Chsa-miR-548t-5p88.9798NM_014671
UBE3Chsa-miR-548az-5p88.9798NM_014671
UBE3Chsa-miR-4639-5p88.0406NM_014671
UBE3Chsa-miR-497-3p86.8597NM_014671
UBE3Chsa-miR-1185-2-3p86.4988NM_014671
UBE3Chsa-miR-4789-5p86.4988NM_014671
UBE3Chsa-let-7f-2-3p86.4988NM_014671
UBE3Chsa-miR-1185-1-3p86.4988NM_014671
UBE3Chsa-miR-1211586.4828NM_014671
UBE3Chsa-miR-432886.3001NM_014671
UBE3Chsa-miR-4714-3p86.0823NM_014671
UBE3Chsa-miR-4645-3p86.0816NM_014671
UBE3Chsa-miR-5692a86.0518NM_014671
UBE3Chsa-miR-211085.8488NM_014671
UBE3Chsa-miR-30c-5p85.7794NM_014671
UBE3Chsa-miR-30e-5p85.7794NM_014671
UBE3Chsa-miR-30a-5p85.7794NM_014671
UBE3Chsa-miR-30d-5p85.7794NM_014671
UBE3Chsa-miR-30b-5p85.7794NM_014671
UBE3Chsa-miR-426985.4333NM_014671
UBE3Chsa-miR-6715b-5p85.4333NM_014671
UBE3Chsa-miR-3129-3p85.0364NM_014671
UBE3Chsa-miR-5583-5p85.0364NM_014671
UBE3Chsa-miR-205284.6257NM_014671
UBE3Chsa-miR-808483.6117NM_014671
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Motifs and transcription factors (TFs) regulating UBE3C

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
UBE3Cmetacluster_7.13ZFX (directAnnotation).
UBE3Ccisbp__M01863ZNF711 (inferredBy_Orthology).
UBE3Cmetacluster_151.2ZNF23 (directAnnotation).
UBE3Cmetacluster_170.2KLF1; KLF10; KLF10; KLF11; KLF11; KLF11; KLF12; KLF12; KLF14; KLF15; KLF17; KLF2; KLF5; KLF7; KLF7; KLF8; MAZ; MAZ; PATZ1; SP1; SP1; SP1; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP2; SP4; SP4; SP5; SP6; SP7; SP8; SP9; ZNF281 (directAnnotation). E2F1; E2F4; KLF10; KLF13; KLF14; KLF17; KLF2; KLF7; SP1; SP1; SP3; SP4; SP5; SP6; SP7 (inferredBy_Orthology).
UBE3Cmetacluster_155.23BCL11B; ZNF711; ZNF711 (directAnnotation). ZFY (inferredBy_Orthology).
UBE3Cmetacluster_144.3ZNF704; ZNF704 (directAnnotation).
UBE3Cdbtfbs__E2F8_representative_N1E2F8 (directAnnotation).
UBE3Ctransfac_pro__M04950EGR1 (directAnnotation).
UBE3Ctaipale_cyt_meth__E2F2_GCGCGCGCGYW_eDBD_reprE2F2 (directAnnotation).
UBE3Ctaipale_tf_pairs__E2F1_ELK1_SGCGCNNNNNCGGAAGN_CAP_reprE2F1; ELK1 (directAnnotation).
UBE3Ctransfac_pro__M00652NRF1 (directAnnotation).
UBE3Ctaipale_tf_pairs__E2F1_HES7_RRCRCGYGYNNNNSGCGCSN_CAP_reprE2F1; HES7 (directAnnotation).
UBE3Ctransfac_pro__M04866HDAC2 (directAnnotation).
UBE3Cjaspar__MA1122.1TFDP1 (directAnnotation).
UBE3Cswissregulon__hs__ZBTB14ZBTB14 (directAnnotation).
UBE3Ckznf__ZNF730_Imbeault2017_RP_RCADEZNF730 (directAnnotation).
UBE3Ccisbp__M00968MTF2 (directAnnotation).
UBE3Ccisbp__M00341PAX6 (directAnnotation).
UBE3Cmetacluster_141.5NR3C1; THAP1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY2; YY2; ZNF597 (directAnnotation). YY1; YY1; YY1; YY2; ZFP42 (inferredBy_Orthology).
UBE3Cmetacluster_151.1KAT7; PML; SMAD5; TAF1; ZFP37; ZGPAT; ZNF519; ZNF519; ZNF571; ZNF770; ZNF770; ZNF770; ZSCAN22; ZSCAN22 (directAnnotation).
UBE3Cjaspar__MA0185.1DEAF1 (inferredBy_Orthology).
UBE3Ccisbp__M00788ZFY (inferredBy_Orthology).
UBE3Cmetacluster_175.1ZNF283 (directAnnotation).
UBE3Chdpi__ZNF304ZNF304 (directAnnotation).
UBE3Ctransfac_pro__M02844BCL6B (inferredBy_Orthology).
UBE3Cmetacluster_133.1ZNF304; ZNF304; ZSCAN22 (directAnnotation).
UBE3Ctransfac_pro__M01199TRIM28 (directAnnotation).
UBE3Ckznf__ZNF682_Isakova2017_SMiLE-seqZNF682 (directAnnotation).
UBE3Ctransfac_pro__M01219SP1 (directAnnotation). SP3 (inferredBy_Orthology).
UBE3Ctransfac_pro__M03806ZBTB7C (directAnnotation).
UBE3Ctransfac_pro__M00915TFAP2A; TFAP2B; TFAP2C (directAnnotation).
UBE3Cmetacluster_144.8ZNF30; ZNF30 (directAnnotation).
UBE3Cdbtfbs__GMEB1_K562_ENCSR928KOR_merged_N1GMEB1 (directAnnotation).
UBE3Ckznf__ZNF571_Imbeault2017_OM_RCADEZNF571 (directAnnotation).
UBE3Ckznf__KLF1_Barrera2016.2_PBMKLF1 (directAnnotation).
UBE3Ctransfac_pro__M01253CNOT3 (directAnnotation).
UBE3Ctransfac_pro__M04817ZBTB33 (directAnnotation).
UBE3Ccisbp__M07938E2F1 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."