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Center for Computational Systems Medicine
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Gene summary

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Datasets with differential expression of this gene

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Expression of this gene in the resistant group across all datasets and cell types

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Significant ligand-receptor pairs related to this gene (This gene does not contain this module)

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Known drug resistance mechanisms of this gene

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MicroRNAs (miRNAs) regulating this gene

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Motifs and transcription factors (TFs) regulating this gene

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Acts as a transcription factor (This gene does not contain this module)

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Acts as a drug target< (This gene does not contain this module)

Gene: SLC4A4

Summary for SLC4A4

Gene informationGene symbol

SLC4A4

Ensembl ID

ENSG00000080493

Entrez ID

8671

Gene namesolute carrier family 4 member 4
SynonymshhNMC|HNBC1|NBC1|NBC2|pNBC|SLC4A5
Gene typeprotein_coding
UniProtAcc

Q9Y6R1


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Dataset with differentially expressed gene: SLC4A4

check buttonDifferentially expression genes between the resistant and sensitive groups. A positive avg_log2FC represents significantly high expression in the resistant group, while a negative avg_log2FC represents significantly low expression in the resistant group.
DatasetSourceTissueCancer type level1Cancer type level2Drug typeRegimenTimepointCell typeavg_log2FCp_val_adj

GSE168668

LNCaP cell lineCell lineProstate cancerProstate cancerTargeted therapyenzalutamideNAMalignant cells-0.672520.00e+00

GSE175716

PDXTumor tissueLiver cancerAdvanced hepatocellular carcinomaTargeted therapysorafenibNAMalignant cells-0.6168220.00e+00

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Expression of SLC4A4 in the resistant group across all datasets and cell types

check buttonRed dots represent significantly high expression in the resistant group, while blue dots represent significantly low expression in the resistant group. White dots represent that there is no significant difference in the expression of this gene between the resistant and sensitive groups. Blank represents that this cell type is not present in this dataset. (If the image exists, the user can click on it to enlarge it in a new window.)
boxplot

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Significant ligand-receptor pairs related to SLC4A4

check buttonThis table shows the significant ligand-receptor pairs related to this gene across all datasets, timepoints and conditions. (Complete files can be downloaded from the download section.)

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Known drug resistance mechanisms of this gene

check buttonThis table shows the known drug resistance mechanisms of this gene. Clicking on this gene will link to another database that displays more drug resistance-related information.
Gene symbolMechanism

SLC4A4

Irregularity in Drug Uptake and Drug Efflux
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MicroRNAs (miRNA) regulating SLC4A4

check buttonThis table shows the miRNAs with a score of more than 80 regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmiRNAScoreGeneBank accession
SLC4A4hsa-miR-548at-5p99.957NM_001098484
SLC4A4hsa-miR-187-5p99.7389NM_001098484
SLC4A4hsa-miR-4766-5p99.7331NM_001098484
SLC4A4hsa-miR-1250-3p99.6064NM_001098484
SLC4A4hsa-miR-561-3p99.448NM_001134742
SLC4A4hsa-miR-548n98.7382NM_001134742
SLC4A4hsa-miR-302c-5p98.7245NM_001098484
SLC4A4hsa-miR-548ar-3p98.7104NM_001134742
SLC4A4hsa-miR-569698.2NM_001098484
SLC4A4hsa-miR-548a-3p98.1173NM_001134742
SLC4A4hsa-miR-548bc98.1173NM_001134742
SLC4A4hsa-miR-548e-3p98.1173NM_001134742
SLC4A4hsa-miR-548f-3p98.1173NM_001134742
SLC4A4hsa-miR-548az-3p98.1173NM_001134742
SLC4A4hsa-miR-153-3p98.0993NM_001098484
SLC4A4hsa-miR-432897.8288NM_001134742
SLC4A4hsa-miR-23a-3p97.6516NM_001098484
SLC4A4hsa-miR-23b-3p97.6516NM_001098484
SLC4A4hsa-miR-23c97.6516NM_001098484
SLC4A4hsa-miR-138-1-3p97.3088NM_001098484
SLC4A4hsa-miR-888-5p96.9472NM_001134742
SLC4A4hsa-miR-590-3p96.8854NM_001098484
SLC4A4hsa-miR-579-3p96.7907NM_001098484
SLC4A4hsa-miR-223-3p96.6751NM_001134742
SLC4A4hsa-miR-196a-1-3p96.4175NM_001134742
SLC4A4hsa-miR-314896.4043NM_001134742
SLC4A4hsa-miR-26b-3p96.3365NM_001098484
SLC4A4hsa-miR-664b-3p96.0471NM_001098484
SLC4A4hsa-miR-4652-3p95.9301NM_001098484
SLC4A4hsa-miR-203a-3p95.2328NM_001098484
SLC4A4hsa-miR-153-5p95.0868NM_001098484
SLC4A4hsa-miR-488-3p94.6853NM_001134742
SLC4A4hsa-miR-428294.1663NM_001134742
SLC4A4hsa-miR-548az-5p93.8202NM_001134742
SLC4A4hsa-miR-548t-5p93.8202NM_001134742
SLC4A4hsa-miR-3664-5p93.7836NM_001134742
SLC4A4hsa-miR-548c-3p93.2389NM_001098484
SLC4A4hsa-miR-1236-5p93.1187NM_003759
SLC4A4hsa-miR-510-3p93.0893NM_001134742
SLC4A4hsa-miR-4659b-3p92.4325NM_001134742
SLC4A4hsa-miR-4659a-3p92.4325NM_001134742
SLC4A4hsa-miR-7856-5p92.2611NM_001134742
SLC4A4hsa-miR-3529-3p91.4701NM_001134742
SLC4A4hsa-miR-61891.3555NM_001134742
SLC4A4hsa-miR-4778-3p90.9731NM_001134742
SLC4A4hsa-miR-495-5p90.8859NM_001134742
SLC4A4hsa-miR-806390.7397NM_001134742
SLC4A4hsa-miR-1213690.5968NM_001134742
SLC4A4hsa-miR-129790.3385NM_003759
SLC4A4hsa-miR-365890.297NM_001134742
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Motifs and transcription factors (TFs) regulating SLC4A4

check buttonThis table shows the Motifs and transcription factors (TFs) regulating this gene. (Complete files can be downloaded from the download section.)
Gene symbolmotifTF_highConf
SLC4A4metacluster_135.11NR2C2 (directAnnotation).
SLC4A4metacluster_135.10MBD2; MBD2; MECP2; MECP2 (directAnnotation).
SLC4A4tfdimers__MD00038TFAP2C (directAnnotation).
SLC4A4metacluster_144.3ZNF704; ZNF704 (directAnnotation).
SLC4A4metacluster_7.13ZFX (directAnnotation).
SLC4A4kznf__ZNF730_Imbeault2017_RP_RCADEZNF730 (directAnnotation).
SLC4A4cisbp__M00968MTF2 (directAnnotation).
SLC4A4metacluster_155.23BCL11B; ZNF711; ZNF711 (directAnnotation). ZFY (inferredBy_Orthology).
SLC4A4metacluster_160.20JUND; PRDM15 (directAnnotation).
SLC4A4cisbp__M00341PAX6 (directAnnotation).
SLC4A4metacluster_198.3ZFP64 (directAnnotation).
SLC4A4metacluster_141.5NR3C1; THAP1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY1; YY2; YY2; ZNF597 (directAnnotation). YY1; YY1; YY1; YY2; ZFP42 (inferredBy_Orthology).
SLC4A4metacluster_151.1KAT7; PML; SMAD5; TAF1; ZFP37; ZGPAT; ZNF519; ZNF519; ZNF571; ZNF770; ZNF770; ZNF770; ZSCAN22; ZSCAN22 (directAnnotation).
SLC4A4jaspar__MA0185.1DEAF1 (inferredBy_Orthology).
SLC4A4metacluster_61.1DEAF1; DEAF1 (directAnnotation).
SLC4A4cisbp__M00788ZFY (inferredBy_Orthology).
SLC4A4kznf__ZNF213_Schmitges2016_RCADEZNF213 (directAnnotation).
SLC4A4metacluster_175.1ZNF283 (directAnnotation).
SLC4A4hdpi__ZNF304ZNF304 (directAnnotation).
SLC4A4transfac_pro__M02844BCL6B (inferredBy_Orthology).
SLC4A4metacluster_125.2TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2D; TFAP2D; TFAP2D; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; ZNF611; ZNF611 (directAnnotation). TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2A; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2B; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2C; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2D; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E; TFAP2E (inferredBy_Orthology).
SLC4A4metacluster_133.1ZNF304; ZNF304; ZSCAN22 (directAnnotation).
SLC4A4transfac_pro__M01199TRIM28 (directAnnotation).
SLC4A4kznf__ZNF682_Isakova2017_SMiLE-seqZNF682 (directAnnotation).
SLC4A4metacluster_151.2ZNF23 (directAnnotation).
SLC4A4transfac_public__M00189TFAP2A; TFAP2B; TFAP2C (directAnnotation).
SLC4A4transfac_pro__M01219SP1 (directAnnotation). SP3 (inferredBy_Orthology).
SLC4A4transfac_pro__M03806ZBTB7C (directAnnotation).
SLC4A4transfac_pro__M00915TFAP2A; TFAP2B; TFAP2C (directAnnotation).
SLC4A4kznf__ZBTB14_Schmitges2016_RCADEZBTB14 (directAnnotation).
SLC4A4taipale_tf_pairs__E2F3_HES7_NNNNGCGCSNNNNNCACGTGNN_CAPE2F3; HES7 (directAnnotation).
SLC4A4transfac_pro__M02089E2F3 (directAnnotation).
SLC4A4taipale_cyt_meth__E2F2_NCGCGCGCGCM_eDBD_methE2F2 (directAnnotation).
SLC4A4transfac_pro__M00803E2F1; E2F3; E2F4; TFDP1 (directAnnotation).
SLC4A4transfac_pro__M04817ZBTB33 (directAnnotation).
SLC4A4metacluster_143.13ZBTB7A (directAnnotation).
SLC4A4transfac_pro__M02861GATA6 (inferredBy_Orthology).
SLC4A4tfdimers__MD00483ZBTB14 (directAnnotation).
SLC4A4cisbp__M07938E2F1 (directAnnotation).
SLC4A4jaspar__MA0535.1SMAD9 (inferredBy_Orthology).
SLC4A4metacluster_15.1E2F4; E2F4; E2F4; E2F4; E2F7; ZFP69B (directAnnotation). E2F4 (inferredBy_Orthology).
SLC4A4metacluster_15.2E2F1; E2F1; E2F1; E2F1; E2F1; E2F3; E2F4; E2F4; E2F4; E2F6; E2F6; E2F6; E2F6; E2F6; E2F6; E2F6; E2F7; TFDP1; TFDP2; ZNF566; ZNF566; ZNF574 (directAnnotation). E2F3; E2F3; E2F4 (inferredBy_Orthology).
SLC4A4taipale_tf_pairs__E2F1_HES7_RRCRCGYGYNNNNSGCGCSN_CAP_reprE2F1; HES7 (directAnnotation).
SLC4A4jaspar__MA1122.1TFDP1 (directAnnotation).
SLC4A4taipale_tf_pairs__ETV5_HES7_NNCACGTGNNNNCCGGAANN_CAPETV5; HES7 (directAnnotation).
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Acts as a transcription factor

check buttonThis table shows that this differential gene acts as a transcription factor.

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Acts as a drug target

check buttonThis table shows that this differential gene acts as a drug target.



1"Sun X, Zhang Y, Li H, Zhou Y, Shi S, Chen Z, He X, Zhang H, Li F, Yin J, Mou M, Wang Y, Qiu Y, Zhu F. DRESIS: the first comprehensive landscape of drug resistance information. Nucleic Acids Res. 2023 Jan 6;51(D1):D1263-D1275. doi: 10.1093/nar/gkac812. PMID: 36243960; PMCID: PMC9825618."
2"Wishart DS, Feunang YD, Guo AC, Lo EJ, Marcu A, Grant JR, Sajed T, Johnson D, Li C, Sayeeda Z, Assempour N, Iynkkaran I, Liu Y, Maciejewski A, Gale N, Wilson A, Chin L, Cummings R, Le D, Pon A, Knox C, Wilson M. DrugBank 5.0: a major update to the DrugBank database for 2018. Nucleic Acids Res. 2018 Jan 4;46(D1):D1074-D1082. doi: 10.1093/nar/gkx1037. PMID: 29126136; PMCID: PMC5753335."