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Navigation1. lncRNA information in TCGA2. Understanding annotation of lncRNAfunc Search page, example: MAGI2-AS3 lncRNA search result page lncRNA annotation result page 1) lncRNA summary 2) lncRNA structure and expression level 3) lncRNA-Protein interaction 4) lncRNA-DNA interaction 5) lncRNA-RNA interaction 6) Variants in lncRNA 7) lncRNAs regulate the target genes through functioning as enhancers 8) lncRNAs regulate the target genes through recruiting transcript factors 9) lncRNAs regulate the alternative splicing events through interacting with splicing factor 10) lncRNAs regulate mRNA through targeting the 3'-UTR region 11) lncRNAs regulate mRNA by competing with miRNA 12) lncRNA coding potential 3. Download data and contact us ![]() We analyzed 15900 lncRNA across 33 cancer types from TCGA (The Cancer Genome Atlas) which included 33 types lncRNA in cancer. Form the differential expresision for each cancer we found 2528 cancer-associated lncRNA. ![]() ![]() - Input query: Gene symbol or Ensembl gene ID. ![]() ![]() Select your lncRNA from the lncRNA list. ![]() ![]() These are lncRNA's annotation categories for your query with links to their corresponding annotation parts. ![]() ![]() This category shows the information of the lncRNA. It shows each lncRNA's overall information from basic information such as symbol, name, and Entrez ID. ![]() ![]() This category provides the known gene isoform models based on GENCODE basic v.19 with expression levels in cancer (TCGA) and normal tissues (GTEx). ![]() ![]() This category provides the interaction between the known lncRNA and transcript factor/RNA binding protein/Epi factor. ![]() ![]() ![]() ![]() This category provides the prediction of lncRNA's target region in DNA. ![]() ![]() This category provides the prediction of the lncRNA-RNA interaction. ![]() ![]() ![]() ![]() ![]() This category provides the variants in lncRNA including RNA editing in lncRNA, tumor specific RNA editing in lncRNA, and cis-eQTL of lncRNA. Note: There is no result of MAGI2-AS3 in this category. Here is the result of RP13-104F24.2 (ENSG00000215769) as an example. ![]() ![]() This category provides lncRNA regulates protein-coding genes by function as enhancer. ![]() ![]() This category provides lncRNA regulates protein-coding through transcript factor. ![]() ![]() This category provides lncRNA regulates alternative splicing events through splicing factor. ![]() ![]() ![]() This category provides lncRNA regulates mRNA by directly targeting 3'UTR region. ![]() ![]() This category provides lncRNA regulates mRNA by competing with miRNA. ![]() ![]() This category provides ORFfinder result for the gencode.v22.lncRNA.transcript.fa. ![]() ![]() Please go to download page and contact page. |
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