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lncRNA: ENSG00000280798

Summary for LINC00294

Gene summary

Gene information	Ensembl ID	ENSG00000280798
	Gene symbol	LINC00294
	Gene name	long intergenic non-protein coding RNA 294
	HGNC	27456
	Entrez ID	283267
	Gene type	lincRNA
	Synonyms	LINC00294\|11p13
	UniProtAcc

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Structure and expression level for LINC00294

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000280798	7.068477e+02	-2.051630e+00	2.089620e-01	-9.818196e+00	9.400000e-23	1.300000e-20	DOWN	GBM
ENSG00000280798	2.116176e+02	-1.064791e+00	1.209110e-01	-8.806407e+00	1.290000e-18	1.870000e-17	DOWN	UCEC
ENSG00000280798	2.099680e+03	2.383245e+00	3.604720e-01	6.611456e+00	3.810000e-11	3.710000e-09	UP	PCPG
ENSG00000280798	2.992421e+02	-1.175890e+00	8.383351e-02	-1.402649e+01	1.070000e-44	7.320000e-43	DOWN	COAD
ENSG00000280798	2.868260e+02	-1.021471e+00	1.637940e-01	-6.236314e+00	4.480000e-10	1.250000e-08	DOWN	READ

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000280798	3.233494e-01	3.026300e-02	CHOL	3.169513e-02
ENSG00000280798	-3.496258e-01	7.839852e-04	KICH	1.106641e-03
ENSG00000280798	3.121471e-01	1.729715e-10	LIHC	6.114599e-10
ENSG00000280798	-3.128234e-01	8.593059e-15	UCEC	8.163406e-14

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lncRNA-Protein interaction for LINC00294

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000280798	ENST00000631190	LINC00294	ENSG00000162601	MYSM1	55.56	93.4254	Q5VVJ2	TF,Epi	NA
ENSG00000280798	ENST00000631190	LINC00294	ENSG00000136504	KAT7	13.4	93.6859	O95251	TF,Epi	NA
ENSG00000280798	ENST00000631190	LINC00294	ENSG00000156374	PCGF6	31.77	95.7947	Q9BYE7	TF,Epi	NA
ENSG00000280798	ENST00000631190	LINC00294	ENSG00000140632	GLYR1	15.83	95.1079	Q49A26	TF,Epi	NA
ENSG00000280798	ENST00000631190	LINC00294	ENSG00000143033	MTF2	13.61	92.9037	Q9Y483	TF,Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000280798	ENST00000631190	LINC00294	ENSG00000236287	ZBED5	64.58	94.9839	Q49AG3	TF	NA
ENSG00000280798	ENST00000631190	LINC00294	ENSG00000100426	ZBED4	59.75	91.8783	O75132	TF	ChIP-seq
ENSG00000280798	ENST00000631190	LINC00294	ENSG00000170581	STAT2	57.75	96.1109	P52630	TF	ChIP-seq
ENSG00000280798	ENST00000631190	LINC00294	ENSG00000135164	DMTF1	56.98	90.3233	Q9Y222	TF	NA
ENSG00000280798	ENST00000631190	LINC00294	ENSG00000162601	MYSM1	55.56	93.613	Q5VVJ2	TF,Epi	NA
ENSG00000280798	ENST00000631190	LINC00294	ENSG00000166888	STAT6	54.65	92.8147	P42226	TF	NA
ENSG00000280798	ENST00000631190	LINC00294	ENSG00000141258	SGSM2	46.64	94.5324	O43147	TF	NA
ENSG00000280798	ENST00000631190	LINC00294	ENSG00000101544	ADNP2	40.54	94.7439	Q6IQ32	TF	NA
ENSG00000280798	ENST00000631190	LINC00294	ENSG00000025156	HSF2	32.23	94.4627	Q03933	TF	NA
ENSG00000280798	ENST00000631190	LINC00294	ENSG00000156374	PCGF6	31.77	95.7504	Q9BYE7	TF,Epi	NA
ENSG00000280798	ENST00000631190	LINC00294	ENSG00000112592	TBP	26.51	93.6525	P20226	TF	ChIP-seq
ENSG00000280798	ENST00000631190	LINC00294	ENSG00000177683	THAP5	21.99	90.5199	Q7Z6K1	TF	NA
ENSG00000280798	ENST00000631190	LINC00294	ENSG00000140632	GLYR1	15.83	95.1882	Q49A26	TF,Epi	NA
ENSG00000280798	ENST00000631190	LINC00294	ENSG00000177463	NR2C2	15.79	90.5872	P49116	TF	NA
ENSG00000280798	ENST00000631190	LINC00294	ENSG00000120798	NR2C1	14.22	92.0887	P13056	TF	NA
ENSG00000280798	ENST00000631190	LINC00294	ENSG00000143033	MTF2	13.61	92.8218	Q9Y483	TF,Epi	NA
ENSG00000280798	ENST00000631190	LINC00294	ENSG00000136504	KAT7	13.4	93.5614	O95251	TF,Epi	NA
ENSG00000280798	ENST00000631190	LINC00294	ENSG00000187079	TEAD1	11.37	94.5783	P28347	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000280798	ENST00000631190	LINC00294	ENSG00000136381	IREB2	60.28	95.0198	P48200	RBP	NA
ENSG00000280798	ENST00000631190	LINC00294	ENSG00000136937	NCBP1	53.99	94.0775	Q09161	RBP	NA
ENSG00000280798	ENST00000631190	LINC00294	ENSG00000067596	DHX8	52.43	95.6346	Q14562	RBP	NA
ENSG00000280798	ENST00000631190	LINC00294	ENSG00000110367	DDX6	20.08	93.1378	P26196	RBP	NA
ENSG00000280798	ENST00000631190	LINC00294	ENSG00000150593	PDCD4	18.1	93.451	Q53EL6	RBP	NA
ENSG00000280798	ENST00000631190	LINC00294	ENSG00000155636	RBM45	17.91	90.6862	Q8IUH3	RBP	NA
ENSG00000280798	ENST00000631190	LINC00294	ENSG00000167881	SRP68	13.66	94.8962	Q9UHB9	RBP	NA
ENSG00000280798	ENST00000631190	LINC00294	ENSG00000113300	CNOT6	11.75	91.663	Q9ULM6	RBP	NA
ENSG00000280798	ENST00000631190	LINC00294	ENSG00000278053	DDX52	8.17	91.7183	Q9Y2R4	RBP	NA

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lncRNA-DNA interaction for LINC00294

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

ZNF30,CEBPZ,NCOA2,DNMT1,PUM1,BCL6,KLF9,XRN1,ILF3,CPEB2,NOL8,PBX2,RBM39,KLF12,ZBTB4,MYPOP,GLYR1,KLF7,JAZF1,MZF1,MYSM1,NRF1,RBM23,RFX5,ZNF2,KAT7,ARID2,ZXDC,KLF4,SUGP2,MAFG,DMTF1,VEZF1,RBM27,ZNF70,BAZ2A,ZNF24,DDX52,RBM28,ATF6B,SNAI2,TBP,GABPA,IKZF5,ZBED4,MEF2C,DDX55,STAT2,TET3,SRP68,ZFP14,LARP6,RNPC3,ZFP69,SAFB2,ATMIN,THOC1,ZNF25,FOXO1,MNT,PNPT1,CNOT4,SON,CHTOP,CWC22,ZBED5,SCAF4,CENPT,TTC14,CREB1,RC3H1,ZNF44,ZFP91,RBMX,RBM4B,CSTF3,RBMS3,RBM26,ZFP1,PURB,ADNP,NCBP1,TERF2,MBD1,IKZF4,ASH1L,ASCC1,CASC3,MEIS2,FUBP1,ARNT2,HAND2,SP4,CPSF7,KLF11,TCF20,AGFG1,LIN54,THOC2,DDX6,TSN,ZBTB6,ZNF34,THAP6,ERG,DDX17,ZBTB2,SRRM2,PUS7,RFX7,AQR,ZNF22,SP2,FMR1,LCOR,PHF1,FOXJ3,PURA,ZC3H8,DEAF1,TTF1,RBM41,NOL9,DZIP3,ZNF48,SGSM2,SMAD3,WIZ,CELF1,SCMH1,PSPC1,KRR1,TMF1,RTCA,ELK4,TIGD1,RBM45,PRDM2,MBD4,AGO3,RBM18,NFIB,CPEB1,SRSF2,MBD6,SALL2,MYNN,PATL1,ZMAT1,ZNF83,SKIL,ELK1,QKI,ZFR,NXF1,ZFX,ZNF8,NKRF,NR2C2,SYNJ1,STAT6,GPBP1,ARNT,RBM6,ZNF14,G3BP2,RBM48,PLS1,LSM11,DZIP1,PUM2,XPO1,FXR2,RBM5,ELF2,SMAD4,NFYB,SP3,ZNF84,ETS1,DDX42,BAZ2B,RXRB,TRA2A,AHDC1,KMT2A,PDCD4,ZEB2,HINFP,XPA,NR2C1,TFDP2,ZFP3,MEF2D,MAX,PCGF6,SFPQ,ETV3,TET2,TDRKH,RBM33,ATF2,ZNF10

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

Only predicted by TDF

GMEB1,PLS1,ERG,BCL6,TBP,DDX17,MZF1,MLXIP,ZBTB4,RBM5,BAZ2A,DDX52,ZMAT1,FXR2,MBNL1,FOXO1,ZNF14,RCAN3,ZFP1,MYNN,DDX46,PATL1,ZNF83,FOXK1,DNMT1,ADNP,RBM6,SRRM2,RBMS3,ZNF30,CELF1,ASCC1,FOXJ2,FOXK2,ZBTB6,DDX1

Exist in public source

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for LINC00294

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

PUF60

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000280798	ENST00000631190	exon_skip_97739	chr12:121244572-121244615	-10.41	-0.3358	CAMKK2	ENST00000324774,ENST00000402834,ENST00000404169	Frame-shift
ENSG00000280798	ENST00000631190	exon_skip_21610	chr1:9737497-9737554	-10.64	-0.2086	CLSTN1	ENST00000377298	In-frame
ENSG00000280798	ENST00000631190	exon_skip_21628	chr1:9756480-9756510	-9.05	-0.5028	CLSTN1	ENST00000377298	In-frame
ENSG00000280798	ENST00000631190	exon_skip_33516	chr1:156938417-156938513	-12.82	-0.1424	ARHGEF11	ENST00000361409	In-frame
ENSG00000280798	ENST00000631190	exon_skip_48327	chr10:26771074-26771089	-6.20	-0.4769	ABI1	ENST00000376142	In-frame
ENSG00000280798	ENST00000631190	exon_skip_90104	chr12:10709907-10710114	-29.58	-0.1541	YBX3	ENST00000228251	In-frame
ENSG00000280798	ENST00000631190	exon_skip_368285	chr22:29329711-29329720	-3.46	-0.5767	AP1B1	ENST00000357586,ENST00000405198	In-frame
ENSG00000280798	ENST00000631190	exon_skip_376144	chr3:100311832-100311877	-10.43	-0.3863	TBC1D23	ENST00000394144	In-frame
ENSG00000280798	ENST00000631190	exon_skip_430633	chr4:82861630-82861708	-10.86	-0.1697	SEC31A	ENST00000355196,ENST00000395310,ENST00000448323	In-frame
ENSG00000280798	ENST00000631190	exon_skip_436488	chr5:96726793-96726859	-10.30	-0.1839	CAST	ENST00000341926,ENST00000395813	In-frame
ENSG00000280798	ENST00000631190	exon_skip_470719	chr7:117134123-117134192	-11.34	-0.2100	ST7	ENST00000265437	In-frame
ENSG00000280798	ENST00000631190	exon_skip_430434	chr4:82356536-82356683	-13.65	-0.1820	HNRNPD	ENST00000313899	In-frame
ENSG00000280798	ENST00000631190	exon_skip_445633	chr5:151110626-151110644	-6.21	-0.6210	ANXA6	ENST00000354546	In-frame

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000280798	ENST00000631190	exon_skip_37475	chr1:225504990-225505053	-8.13	-0.2710	ENAH	ENST00000366844	In-frame
ENSG00000280798	ENST00000631190	exon_skip_44853	chr10:104010815-104010908	-15.96	-0.2128	SLK	ENST00000369755	In-frame
ENSG00000280798	ENST00000631190	exon_skip_66185	chr11:124626472-124626609	-15.17	-0.1194	TBRG1	ENST00000441174	Frame-shift
ENSG00000280798	ENST00000631190	exon_skip_114200	chr14:73279280-73279424	-18.19	-0.1491	NUMB	ENST00000355058,ENST00000555238	In-frame
ENSG00000280798	ENST00000631190	exon_skip_145776	chr16:70665465-70665540	-20.98	-0.3179	MTSS1L	ENST00000338779	In-frame
ENSG00000280798	ENST00000631190	exon_skip_146683	chr16:85780378-85780473	-13.48	-0.1515	EMC8	ENST00000253457	Frame-shift
ENSG00000280798	ENST00000631190	exon_skip_302779	chr19:13078612-13078735	-18.29	-0.1524	NFIX	ENST00000592199	In-frame
ENSG00000280798	ENST00000631190	exon_skip_423795	chr4:55888887-55888932	-8.19	-0.2340	EXOC1	ENST00000346134,ENST00000381295	In-frame
ENSG00000280798	ENST00000631190	exon_skip_456460	chr6:17771113-17771218	-15.99	-0.1523	KIF13A	ENST00000259711	In-frame

lncRNA targets by miRNA.

LncRNA Ensembl ID	miRNA ID	LncRNA ENST ID	Binding site in lncRNA	Score	Energy	Align Len	Public source
ENSG00000280798	hsa-mir-1468	ENST00000631190	chr11:33076882-33076974	208.00	-75.90	92	NA
ENSG00000280798	hsa-mir-1468	ENST00000631190	chr11:33077343-33077421	189.00	-62.98	81	NA
ENSG00000280798	hsa-mir-1468	ENST00000631190	chr11:33076406-33076501	167.00	-60.26	83	NA
ENSG00000280798	hsa-mir-1468	ENST00000631190	chr11:33077739-33077833	167.00	-69.73	92	NA
ENSG00000280798	hsa-mir-1468	ENST00000631190	chr11:33077965-33078050	167.00	-70.56	86	NA
ENSG00000280798	hsa-mir-1468	ENST00000631190	chr11:33079206-33079289	166.00	-56.29	85	NA
ENSG00000280798	hsa-mir-1468	ENST00000631190	chr11:33078635-33078729	164.00	-69.88	92	NA
ENSG00000280798	hsa-mir-1468	ENST00000631190	chr11:33079359-33079449	164.00	-57.71	90	NA
ENSG00000280798	hsa-mir-1468	ENST00000631190	chr11:33078477-33078562	160.00	-62.36	80	NA
ENSG00000280798	hsa-mir-1468	ENST00000631190	chr11:33078362-33078448	159.00	-58.98	81	NA
ENSG00000280798	hsa-mir-1468	ENST00000631190	chr11:33076684-33076770	158.00	-70.41	85	NA
ENSG00000280798	hsa-mir-1468	ENST00000631190	chr11:33079012-33079100	158.00	-62.51	88	NA
ENSG00000280798	hsa-mir-1468	ENST00000631190	chr11:33077502-33077593	157.00	-63.41	90	NA
ENSG00000280798	hsa-mir-1468	ENST00000631190	chr11:33078259-33078340	156.00	-56.82	72	NA
ENSG00000280798	hsa-mir-1468	ENST00000631190	chr11:33077861-33077953	153.00	-60.88	85	NA
ENSG00000280798	hsa-mir-1468	ENST00000631190	chr11:33076150-33076240	149.00	-63.46	63	NA
ENSG00000280798	hsa-mir-1468	ENST00000631190	chr11:33076209-33076296	148.00	-59.59	50	NA
ENSG00000280798	hsa-mir-1468	ENST00000631190	chr11:33078067-33078154	147.00	-65.80	72	NA
ENSG00000280798	hsa-mir-1468	ENST00000631190	chr11:33076498-33076589	144.00	-61.09	81	NA
ENSG00000280798	hsa-mir-1468	ENST00000631190	chr11:33077418-33077503	144.00	-62.20	79	NA
ENSG00000280798	hsa-mir-1468	ENST00000631190	chr11:33078152-33078234	143.00	-73.08	77	NA
ENSG00000280798	hsa-mir-1468	ENST00000631190	chr11:33076969-33077057	142.00	-70.97	79	NA
ENSG00000280798	hsa-mir-1468	ENST00000631190	chr11:33078844-33078938	141.00	-64.99	94	NA
ENSG00000280798	hsa-mir-1468	ENST00000631190	chr11:33076294-33076378	140.00	-67.08	84	NA

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Variants for LINC00294

RNA A-to-I editing events in lncRNA.

LncRNAediting ID	LncRNA Ensembl ID	Chromosome	Editing Position	Strand	Gene Type	Gene Name	Transcript ID	Transcript Type	Transcript Name
LncEditing_242116	ENSG00000280798.1	chr11	33076986	+	lincRNA	LINC00294	ENST00000631190.1	lincRNA	LINC00294-001

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID	LncRNA Index	Cancer Type	Chr_Postion_Strand	AVE1	AVE2	log2FC	W-value	P-value	Adjc.p-value	Change
ENSG00000280798	LncEditing_242116	KIRC	chr11_33076986_+	7.770802e+00	6.000816e+00	2.681649e+00	5.830274e+00	5.533652e-09	7.846381e-09	UP
ENSG00000280798	LncEditing_242116	PCPG	chr11_33076986_+	1.674425e+01	1.212693e+01	2.148450e+00	4.623399e+00	3.775024e-06	7.223077e-06	UP

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID	LncRNA Index	Correlation	P-value	Adjc.p-value
ENSG00000280798	LncEditing_242116	-5.287665e-01	9.394868e-05	9.489949e-04

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000280798	ENSG00000120756	PLS1	CHOL,COAD,KICH,READ,THYM		COAD,READ

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID	TF ID	TF Name	PCgene ID	PCgene Name	Number of Cancer	Canaer Types
ENSG00000280798	ENSG00000112592	TBP	ENSG00000162419	GMEB1	5	CHOL,DLBC,KICH,LIHC,THYM
ENSG00000280798	ENSG00000136504	KAT7	ENSG00000162419	GMEB1	5	ACC,CHOL,DLBC,KICH,LIHC
ENSG00000280798	ENSG00000143033	MTF2	ENSG00000162419	GMEB1	6	CHOL,DLBC,KICH,LIHC,THCA,THYM
ENSG00000280798	ENSG00000236287	ZBED5	ENSG00000162419	GMEB1	5	ACC,CHOL,DLBC,LIHC,THYM
ENSG00000280798	ENSG00000187079	TEAD1	ENSG00000113916	BCL6	6	ACC,KICH,PAAD,READ,STAD,THYM
ENSG00000280798	ENSG00000025156	HSF2	ENSG00000112592	TBP	6	DLBC,KICH,LIHC,PAAD,THYM,UCS
ENSG00000280798	ENSG00000135164	DMTF1	ENSG00000112592	TBP	7	CHOL,DLBC,KIRC,LIHC,PAAD,THYM,UCS
ENSG00000280798	ENSG00000136504	KAT7	ENSG00000112592	TBP	6	CHOL,DLBC,KICH,LIHC,PAAD,THYM
ENSG00000280798	ENSG00000143033	MTF2	ENSG00000112592	TBP	6	CHOL,DLBC,KICH,KIRC,LIHC,THYM
ENSG00000280798	ENSG00000162601	MYSM1	ENSG00000112592	TBP	5	CHOL,DLBC,LIHC,PAAD,THYM
ENSG00000280798	ENSG00000177463	NR2C2	ENSG00000112592	TBP	5	CHOL,DLBC,LIHC,PAAD,THYM
ENSG00000280798	ENSG00000236287	ZBED5	ENSG00000112592	TBP	6	CHOL,DLBC,KIRC,LIHC,PAAD,THYM
ENSG00000280798	ENSG00000025156	HSF2	ENSG00000100201	DDX17	5	DLBC,LIHC,PAAD,TGCT,THYM
ENSG00000280798	ENSG00000112592	TBP	ENSG00000100201	DDX17	5	DLBC,KIRC,LIHC,PAAD,THYM
ENSG00000280798	ENSG00000135164	DMTF1	ENSG00000100201	DDX17	6	DLBC,KIRC,LIHC,PAAD,TGCT,THYM
ENSG00000280798	ENSG00000136504	KAT7	ENSG00000100201	DDX17	7	ACC,DLBC,LIHC,PAAD,PRAD,READ,THYM
ENSG00000280798	ENSG00000162601	MYSM1	ENSG00000100201	DDX17	6	ACC,DLBC,LIHC,PAAD,READ,THYM
ENSG00000280798	ENSG00000177463	NR2C2	ENSG00000100201	DDX17	8	ACC,DLBC,LIHC,PAAD,PRAD,READ,TGCT,THYM
ENSG00000280798	ENSG00000187079	TEAD1	ENSG00000100201	DDX17	5	ACC,LIHC,READ,TGCT,THYM
ENSG00000280798	ENSG00000236287	ZBED5	ENSG00000100201	DDX17	8	ACC,DLBC,KIRC,LIHC,PAAD,READ,TGCT,THYM
ENSG00000280798	ENSG00000236287	ZBED5	ENSG00000099326	MZF1	5	CHOL,DLBC,KIRC,KIRP,LIHC
ENSG00000280798	ENSG00000025156	HSF2	ENSG00000175727	MLXIP	5	KICH,LIHC,PAAD,PRAD,THYM
ENSG00000280798	ENSG00000120798	NR2C1	ENSG00000175727	MLXIP	5	DLBC,KIRP,LIHC,PRAD,THYM
ENSG00000280798	ENSG00000177463	NR2C2	ENSG00000175727	MLXIP	5	DLBC,LIHC,PAAD,PRAD,THYM
ENSG00000280798	ENSG00000135164	DMTF1	ENSG00000174282	ZBTB4	5	CHOL,DLBC,LIHC,PAAD,THYM
ENSG00000280798	ENSG00000162601	MYSM1	ENSG00000174282	ZBTB4	5	CHOL,DLBC,LIHC,PAAD,THYM
ENSG00000280798	ENSG00000177463	NR2C2	ENSG00000174282	ZBTB4	8	CHOL,DLBC,GBM,LIHC,PAAD,PRAD,READ,THYM
ENSG00000280798	ENSG00000187079	TEAD1	ENSG00000174282	ZBTB4	8	KICH,LIHC,PAAD,PRAD,READ,STAD,THYM,UCEC
ENSG00000280798	ENSG00000025156	HSF2	ENSG00000003756	RBM5	6	DLBC,KICH,LIHC,PAAD,TGCT,THYM
ENSG00000280798	ENSG00000112592	TBP	ENSG00000003756	RBM5	5	KICH,KIRC,LIHC,PAAD,THYM
ENSG00000280798	ENSG00000135164	DMTF1	ENSG00000003756	RBM5	6	DLBC,KIRC,LIHC,PAAD,TGCT,THYM
ENSG00000280798	ENSG00000136504	KAT7	ENSG00000003756	RBM5	5	DLBC,KICH,LIHC,PAAD,THYM
ENSG00000280798	ENSG00000177463	NR2C2	ENSG00000003756	RBM5	5	DLBC,LIHC,PAAD,TGCT,THYM
ENSG00000280798	ENSG00000236287	ZBED5	ENSG00000003756	RBM5	6	DLBC,KIRC,LIHC,PAAD,TGCT,THYM
ENSG00000280798	ENSG00000112592	TBP	ENSG00000076108	BAZ2A	5	CHOL,DLBC,KIRC,LIHC,THYM
ENSG00000280798	ENSG00000135164	DMTF1	ENSG00000076108	BAZ2A	5	CHOL,DLBC,KIRC,LIHC,THYM
ENSG00000280798	ENSG00000236287	ZBED5	ENSG00000076108	BAZ2A	5	CHOL,DLBC,KIRC,LIHC,THYM
ENSG00000280798	ENSG00000136504	KAT7	ENSG00000129245	FXR2	5	CHOL,KICH,LIHC,PAAD,THYM
ENSG00000280798	ENSG00000025156	HSF2	ENSG00000152601	MBNL1	6	DLBC,LIHC,PRAD,STAD,THYM,UCEC
ENSG00000280798	ENSG00000177463	NR2C2	ENSG00000152601	MBNL1	5	DLBC,LIHC,PRAD,READ,THYM
ENSG00000280798	ENSG00000187079	TEAD1	ENSG00000152601	MBNL1	6	LIHC,PRAD,READ,SARC,STAD,UCEC
ENSG00000280798	ENSG00000236287	ZBED5	ENSG00000152601	MBNL1	6	DLBC,LIHC,READ,THYM,UCEC,UCS
ENSG00000280798	ENSG00000101544	ADNP2	ENSG00000166889	PATL1	5	ACC,CHOL,DLBC,LIHC,THYM
ENSG00000280798	ENSG00000136504	KAT7	ENSG00000166889	PATL1	5	ACC,CHOL,DLBC,LIHC,THYM
ENSG00000280798	ENSG00000162601	MYSM1	ENSG00000166889	PATL1	5	ACC,CHOL,DLBC,LIHC,THYM
ENSG00000280798	ENSG00000177463	NR2C2	ENSG00000166889	PATL1	5	ACC,CHOL,DLBC,LIHC,THYM
ENSG00000280798	ENSG00000236287	ZBED5	ENSG00000166889	PATL1	5	ACC,CHOL,DLBC,LIHC,THYM
ENSG00000280798	ENSG00000177463	NR2C2	ENSG00000164916	FOXK1	5	DLBC,GBM,LIHC,PAAD,PRAD
ENSG00000280798	ENSG00000135164	DMTF1	ENSG00000101126	ADNP	5	CHOL,DLBC,LIHC,TGCT,THYM
ENSG00000280798	ENSG00000136504	KAT7	ENSG00000101126	ADNP	5	CHOL,DLBC,LIHC,PCPG,THYM
ENSG00000280798	ENSG00000177463	NR2C2	ENSG00000101126	ADNP	6	CHOL,DLBC,LIHC,PCPG,TGCT,THYM
ENSG00000280798	ENSG00000236287	ZBED5	ENSG00000101126	ADNP	5	CHOL,DLBC,LIHC,PCPG,TGCT
ENSG00000280798	ENSG00000025156	HSF2	ENSG00000004534	RBM6	5	DLBC,LIHC,STAD,TGCT,THYM
ENSG00000280798	ENSG00000135164	DMTF1	ENSG00000004534	RBM6	5	DLBC,KIRC,LIHC,TGCT,THYM
ENSG00000280798	ENSG00000236287	ZBED5	ENSG00000004534	RBM6	7	ACC,DLBC,KIRC,KIRP,LIHC,TGCT,THYM
ENSG00000280798	ENSG00000112592	TBP	ENSG00000167978	SRRM2	5	CHOL,DLBC,KIRC,LIHC,THYM
ENSG00000280798	ENSG00000135164	DMTF1	ENSG00000167978	SRRM2	5	CHOL,DLBC,KIRC,LIHC,THYM
ENSG00000280798	ENSG00000162601	MYSM1	ENSG00000167978	SRRM2	5	CHOL,DLBC,GBM,LIHC,THYM
ENSG00000280798	ENSG00000177463	NR2C2	ENSG00000167978	SRRM2	5	CHOL,DLBC,GBM,LIHC,THYM
ENSG00000280798	ENSG00000236287	ZBED5	ENSG00000168661	ZNF30	5	LIHC,PAAD,PCPG,TGCT,UCEC
ENSG00000280798	ENSG00000025156	HSF2	ENSG00000149187	CELF1	6	DLBC,LIHC,PRAD,STAD,TGCT,THYM
ENSG00000280798	ENSG00000101544	ADNP2	ENSG00000149187	CELF1	5	ACC,CHOL,DLBC,LIHC,THYM
ENSG00000280798	ENSG00000112592	TBP	ENSG00000149187	CELF1	6	CHOL,DLBC,KIRC,LIHC,PAAD,THYM
ENSG00000280798	ENSG00000120798	NR2C1	ENSG00000149187	CELF1	5	DLBC,KIRP,LIHC,PRAD,THYM
ENSG00000280798	ENSG00000135164	DMTF1	ENSG00000149187	CELF1	8	CHOL,DLBC,KIRC,LIHC,PAAD,TGCT,THYM,UCS
ENSG00000280798	ENSG00000136504	KAT7	ENSG00000149187	CELF1	10	ACC,CHOL,DLBC,LIHC,PAAD,PCPG,PRAD,READ,SARC,THYM
ENSG00000280798	ENSG00000140632	GLYR1	ENSG00000149187	CELF1	5	CHOL,DLBC,GBM,PCPG,THYM
ENSG00000280798	ENSG00000156374	PCGF6	ENSG00000149187	CELF1	5	DLBC,HNSC,LIHC,SKCM,THYM
ENSG00000280798	ENSG00000162601	MYSM1	ENSG00000149187	CELF1	8	ACC,CHOL,DLBC,GBM,LIHC,PAAD,READ,THYM
ENSG00000280798	ENSG00000170581	STAT2	ENSG00000149187	CELF1	5	DLBC,KICH,KIRP,LIHC,PAAD
ENSG00000280798	ENSG00000177463	NR2C2	ENSG00000149187	CELF1	11	ACC,CHOL,DLBC,GBM,LIHC,PAAD,PCPG,PRAD,READ,TGCT,THYM
ENSG00000280798	ENSG00000177683	THAP5	ENSG00000149187	CELF1	5	CHOL,DLBC,PCPG,SKCM,THYM
ENSG00000280798	ENSG00000187079	TEAD1	ENSG00000149187	CELF1	12	ACC,KICH,LIHC,LUAD,PAAD,PCPG,PRAD,READ,SARC,STAD,TGCT,THYM
ENSG00000280798	ENSG00000236287	ZBED5	ENSG00000149187	CELF1	15	ACC,CHOL,DLBC,HNSC,KIRC,KIRP,LIHC,PAAD,PCPG,READ,SARC,SKCM,TGCT,THYM,UCS
ENSG00000280798	ENSG00000136504	KAT7	ENSG00000138303	ASCC1	5	DLBC,KICH,LIHC,PRAD,THYM
ENSG00000280798	ENSG00000025156	HSF2	ENSG00000065970	FOXJ2	5	KICH,LIHC,PRAD,STAD,THYM
ENSG00000280798	ENSG00000177463	NR2C2	ENSG00000065970	FOXJ2	5	DLBC,GBM,LIHC,PRAD,THYM
ENSG00000280798	ENSG00000187079	TEAD1	ENSG00000065970	FOXJ2	6	KICH,LIHC,PRAD,STAD,THYM,UCEC
ENSG00000280798	ENSG00000112592	TBP	ENSG00000079785	DDX1	5	CHOL,DLBC,KICH,LIHC,THYM
ENSG00000280798	ENSG00000136504	KAT7	ENSG00000079785	DDX1	6	CHOL,DLBC,KICH,LIHC,PCPG,THYM
ENSG00000280798	ENSG00000177463	NR2C2	ENSG00000079785	DDX1	5	CHOL,DLBC,LIHC,PCPG,THYM

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID	lncRNA-miRNA-mRNA	Cancer Types
ENSG00000280798	LINC00294,hsa-mir-1468,PSMD1	KICH,CHOL,THCA,ACC,MESO
ENSG00000280798	LINC00294,hsa-mir-1468,TPM3	KICH,CHOL,THCA,ACC,MESO
ENSG00000280798	LINC00294,hsa-mir-1468,ARHGAP1	KICH,CHOL,THCA,ACC,MESO
ENSG00000280798	LINC00294,hsa-mir-1468,ANXA2	KICH,CHOL,THCA,ACC,MESO
ENSG00000280798	LINC00294,hsa-mir-1468,ABL2	KICH,CHOL,THCA,ACC,MESO

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000280798.1	ENST00000631190.1	98	186	479

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential