lncRNA targets the enhancer region and positively regulates the gene expression. |
Only predicted by TDF | ARHGEF9,KBTBD6,ARHGEF17,NISCH,TSPYL2,DET1,TPPP,HSPG2,ATM,ACTC1,ARHGEF2,FLVCR1,ILF3,PRKAB2,MAPKBP1,RBM39,KLF12,LENG8,ANGEL2,DNAJC27,PER2,SH2B1,BRD1,PHKA2,PPP1R12C,ATN1,HSPB8,CEP57,UBE2G2,VASH1,CEP68,AKAP8,NLGN2,PRICKLE2,FAM168B,KAT7,ZXDC,TGFB1I1,MAPK8IP3,DCP1A,FEM1B,INTS3,DIP2C,SUGP2,N4BP2L2,DMTF1,ARMCX4,NEK3,TNS1,MLLT6,UNKL,NEXN,PHLDB1,CLASP1,KIAA0895L,INO80D,DNAJB5,SPIN3,MYL9,ADCY9,SAMD10,MTSS2,TBRG1,BIVM,DCAF8,PGAP1,KMT2B,PPP1R12A,KLHDC1,DMPK,CENATAC,TTC28,RNPC3,C14orf28,TENT4A,SAFB2,MSANTD2,TUBGCP6,PROSER1,WDR59,ZNF25,LRCH3,JPH2,MYO9A,ACAD8,GABBR1,RNF38,MRI1,NUMA1,DCAF16,EPN2,TCEAL1,TMEM8B,ZBED5,CCDC50,RPAP1,SGCB,GPM6B,EHBP1L1,CDON,SETD2,RICTOR,TTC14,ENAH,KLHL42,SLC4A3,NIBAN1,CCNT2,CALCOCO1,RC3H1,DACT3,AFAP1,FBXW8,EDC4,FAM76B,POGZ,NFRKB,BAHD1,ADCY5,PKD1,RIMKLB,LTO1,AGO2,TSC2,RBPMS,PHC1,PPIP5K1,CLCN6,LARGE1,ECHDC2,BMPR1A,SACS,C20orf194,SYT11,TAF1C,PPM1L,PCSK7,APBB2,ADNP,TNIK,MYEF2,SPATA6,DHX34,RNF150,ZCCHC14,CPSF7,NEK9,NCOR2,VPS26B,SH3BGR,ITGA7,LRIG2,EZH1,ZNF34,LRP6,KIAA0753,RABL2A,C3orf18,PDZD4,SESTD1,CAVIN2,TRIM45,DDX17,GNB5,SRRM2,NRBP2,CCDC9B,GSTM2,FILIP1L,SLC25A29,MIB2,SENP7,FOXN3,LMOD1,MECP2,DUSP3,MAP4K5,MBD5,ZC3H8,MARF1,ENO2,TTC21B,MCAM,HSF4,HERC2,ARGLU1,YJEFN3,PRKAA2,CTDSP2,PAXBP1,SETD5,TMOD2,FNBP4,KMT2D,WWTR1,PPP1R14A,BOD1L1,SLC25A23,SOGA1,CELF1,USP21,TLE2,LTBP4,KLC1,PRDM2,CHD2,TSTD2,AGO3,PCBP4,CRYZL1,IGSF9B,CCDC93,DFFB,PDLIM3,RASL12,BCHE,STK36,HOOK2,CACNA1H,HERC1,KANSL1,DPYSL3,ARHGEF4,ZNF8,NCKAP5L,ITPR1,NR2C2,PAN2,TRIM46,RERE,DIDO1,GOLGA8A,CDS2,SETD4,KDM2B,ALG9,FRY,RBM6,SZT2,CSPG4,NOL4L,CREBBP,TTBK2,SBF1,REEP1,AARSD1,LSM11,DUSP28,CCDC82,CLIP3,LPP,RBM5,CRMP1,NKTR,CRAMP1,MBTD1,PNN,TMEM25,DNASE1,C19orf71,MYH11,TTLL3,DOT1L,EPM2AIP1,GNG7,ZNF84,KLHL23,CENPJ,C3orf70,PARP6,SIK3,TNS2,POU6F1,TRA2A,WDR33,HECTD4,TMEM47,KMT2A,CASQ2,TPP2,REV1,TAGLN,NACC2,PARD6G,NCAM1,KHDC4,CFL2,DIXDC1,ASXL1,MEF2D,MIDEAS,STX2,PNISR,ASB2,ARHGEF25,SOS1,EIF4ENIF1,WBP1,RBM33,RNF214,ZNF10,MYLK | Exist in public source | NA |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | PRDX1,CLIC1,PPIB,DAD1,NPC2,NECAP2,RPN1,EDEM2,RHOG,ORMDL2 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | ENSG00000280237 | ENST00000624667 | exon_skip_8075 | chr1:96806418-96806452 | -12.71 | -0.6052 | PTBP2 | ENST00000426398 | Frame-shift | ENSG00000280237 | ENST00000624667 | exon_skip_97739 | chr12:121244572-121244615 | -12.74 | -0.3861 | CAMKK2 | ENST00000324774,ENST00000402834,ENST00000404169 | Frame-shift | ENSG00000280237 | ENST00000624667 | exon_skip_335378 | chr2:237751199-237751271 | -12.10 | -0.2574 | LRRFIP1 | ENST00000392000 | In-frame | ENSG00000280237 | ENST00000624667 | exon_skip_436488 | chr5:96726793-96726859 | -10.96 | -0.2962 | CAST | ENST00000341926,ENST00000395813 | In-frame |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | ENSG00000280237 | ENSG00000008710 | PKD1 | ESCA,GBM,LUAD,MESO,PCPG,PRAD,SARC,STAD,THCA | PCPG | | ENSG00000280237 | ENSG00000012822 | CALCOCO1 | ESCA,GBM,PRAD,SARC,STAD,UCS | | STAD | ENSG00000280237 | ENSG00000046653 | GPM6B | ESCA,PRAD,STAD,TGCT,THCA | | STAD | ENSG00000280237 | ENSG00000065534 | MYLK | ESCA,PRAD,SARC,STAD,TGCT | | STAD | ENSG00000280237 | ENSG00000076706 | MCAM | ESCA,PRAD,SARC,STAD,TGCT | | STAD | ENSG00000280237 | ENSG00000079308 | TNS1 | ESCA,PRAD,SARC,STAD,TGCT,THCA | | STAD | ENSG00000280237 | ENSG00000080854 | IGSF9B | ESCA,GBM,LGG,PCPG,SARC,STAD | PCPG | | ENSG00000280237 | ENSG00000090006 | LTBP4 | ESCA,MESO,PRAD,STAD,THCA | | STAD | ENSG00000280237 | ENSG00000100628 | ASB2 | ESCA,PRAD,SARC,STAD,UCS | | STAD | ENSG00000280237 | ENSG00000101335 | MYL9 | ESCA,PRAD,SARC,STAD,TGCT | | STAD | ENSG00000280237 | ENSG00000103710 | RASL12 | ESCA,PRAD,SARC,STAD,TGCT | | STAD | ENSG00000280237 | ENSG00000104936 | DMPK | ESCA,PRAD,SARC,STAD,THCA,UCS | | STAD | ENSG00000280237 | ENSG00000105270 | CLIP3 | ESCA,GBM,PCPG,PRAD,SARC,STAD,UCS | PCPG | STAD | ENSG00000280237 | ENSG00000111077 | TNS2 | ESCA,MESO,PRAD,STAD,UCS | | STAD | ENSG00000280237 | ENSG00000114200 | BCHE | ESCA,PRAD,SARC,STAD,TGCT | | STAD | ENSG00000280237 | ENSG00000114923 | SLC4A3 | ESCA,MESO,PCPG,PRAD,STAD,UCS | PCPG | | ENSG00000280237 | ENSG00000118729 | CASQ2 | ESCA,PRAD,SARC,STAD,UCS | | STAD | ENSG00000280237 | ENSG00000125503 | PPP1R12C | ESCA,GBM,PAAD,PRAD,STAD | | STAD | ENSG00000280237 | ENSG00000125648 | SLC25A23 | ESCA,GBM,PAAD,SARC,STAD,THCA | | STAD | ENSG00000280237 | ENSG00000128872 | TMOD2 | ESCA,MESO,PCPG,PRAD,STAD | PCPG | STAD | ENSG00000280237 | ENSG00000133392 | MYH11 | ESCA,PRAD,SARC,STAD,TGCT | | STAD | ENSG00000280237 | ENSG00000135842 | NIBAN1 | ESCA,LUAD,SARC,STAD,TGCT,THYM | | STAD | ENSG00000280237 | ENSG00000140682 | TGFB1I1 | ESCA,PRAD,SARC,STAD,TGCT | | STAD | ENSG00000280237 | ENSG00000145012 | LPP | ESCA,PRAD,SARC,STAD,THCA | | STAD | ENSG00000280237 | ENSG00000147027 | TMEM47 | ESCA,PRAD,SARC,STAD,TGCT,THCA | | STAD | ENSG00000280237 | ENSG00000149591 | TAGLN | ESCA,PRAD,SARC,STAD,TGCT | | STAD | ENSG00000280237 | ENSG00000149596 | JPH2 | ESCA,PRAD,SARC,STAD,TGCT | | STAD | ENSG00000280237 | ENSG00000150764 | DIXDC1 | ESCA,PRAD,SARC,STAD,THCA,UCS | | STAD | ENSG00000280237 | ENSG00000150995 | ITPR1 | ESCA,PRAD,SARC,STAD,THCA | | STAD,THCA | ENSG00000280237 | ENSG00000152137 | HSPB8 | ESCA,PRAD,SARC,STAD,TGCT | | STAD | ENSG00000280237 | ENSG00000154553 | PDLIM3 | ESCA,PRAD,SARC,STAD,TGCT,THCA,UCS | | STAD,THCA | ENSG00000280237 | ENSG00000159251 | ACTC1 | ESCA,PRAD,STAD,TGCT,UCS | | STAD | ENSG00000280237 | ENSG00000162409 | PRKAA2 | ESCA,SARC,STAD,THCA,UCS | | STAD | ENSG00000280237 | ENSG00000162614 | NEXN | ESCA,PRAD,SARC,STAD,THCA | | STAD,THCA | ENSG00000280237 | ENSG00000163431 | LMOD1 | ESCA,PRAD,SARC,STAD,TGCT,THCA | | STAD,THCA | ENSG00000280237 | ENSG00000163637 | PRICKLE2 | ESCA,PRAD,SARC,STAD,THCA | | STAD | ENSG00000280237 | ENSG00000165410 | CFL2 | ESCA,PRAD,SARC,STAD,TGCT,THCA | | STAD | ENSG00000280237 | ENSG00000167641 | PPP1R14A | ESCA,PRAD,SARC,STAD,TGCT | | STAD | ENSG00000280237 | ENSG00000168497 | CAVIN2 | ESCA,PRAD,STAD,TGCT,THCA | | STAD,THCA | ENSG00000280237 | ENSG00000170153 | RNF150 | ESCA,GBM,PRAD,SARC,STAD,THCA | | STAD,THCA | ENSG00000280237 | ENSG00000172465 | TCEAL1 | ESCA,PRAD,SARC,STAD,THCA | | STAD | ENSG00000280237 | ENSG00000173175 | ADCY5 | ESCA,GBM,PRAD,SARC,STAD,TGCT,THYM | | STAD | ENSG00000280237 | ENSG00000176533 | GNG7 | ESCA,MESO,PRAD,STAD,TGCT,THCA | | STAD | ENSG00000280237 | ENSG00000184205 | TSPYL2 | ESCA,LUAD,PCPG,PRAD,SARC,STAD | | STAD | ENSG00000280237 | ENSG00000184271 | POU6F1 | ESCA,GBM,PCPG,SARC,STAD,THCA | PCPG | STAD | ENSG00000280237 | ENSG00000185437 | SH3BGR | ESCA,PRAD,SARC,STAD,THCA | | STAD | ENSG00000280237 | ENSG00000187068 | C3orf70 | ESCA,GBM,PRAD,SARC,STAD | | STAD | ENSG00000280237 | ENSG00000187231 | SESTD1 | ESCA,PCPG,PRAD,SARC,STAD | PCPG | | ENSG00000280237 | ENSG00000188549 | CCDC9B | ESCA,MESO,PRAD,SARC,STAD,THCA,THYM | | STAD | ENSG00000280237 | ENSG00000196557 | CACNA1H | ESCA,GBM,PRAD,SARC,STAD,TGCT,THCA,UCS | | STAD | ENSG00000280237 | ENSG00000197380 | DACT3 | ESCA,GBM,PRAD,SARC,STAD | | STAD | ENSG00000280237 | ENSG00000240771 | ARHGEF25 | ESCA,PCPG,PRAD,STAD,THYM | PCPG | STAD | ENSG00000280237 | ENSG00000067840 | PDZD4 | GBM,MESO,PCPG,PRAD,STAD,TGCT | PCPG | STAD | ENSG00000280237 | ENSG00000072832 | CRMP1 | GBM,LGG,PCPG,PRAD,TGCT,UCS | PCPG | | ENSG00000280237 | ENSG00000111752 | PHC1 | GBM,MESO,PCPG,PRAD,SARC,STAD,THCA,UCS | PCPG | | ENSG00000280237 | ENSG00000136002 | ARHGEF4 | GBM,PCPG,PRAD,SARC,THCA | PCPG | | ENSG00000280237 | ENSG00000137094 | DNAJB5 | GBM,LGG,SARC,STAD,TGCT | | STAD | ENSG00000280237 | ENSG00000138834 | MAPK8IP3 | GBM,LUAD,PAAD,PCPG,UCS | LUAD,PCPG | | ENSG00000280237 | ENSG00000149294 | NCAM1 | GBM,LGG,PCPG,PRAD,STAD,THCA,UCS | PCPG | STAD,THCA | ENSG00000280237 | ENSG00000151849 | CENPJ | GBM,LGG,MESO,PRAD,THCA,UCS | | THCA | ENSG00000280237 | ENSG00000162769 | FLVCR1 | GBM,LGG,MESO,PCPG,SARC,TGCT | PCPG | | ENSG00000280237 | ENSG00000163590 | PPM1L | GBM,PRAD,SARC,STAD,THCA | | STAD | ENSG00000280237 | ENSG00000165572 | KBTBD6 | GBM,LGG,MESO,PCPG,UCS | PCPG | | ENSG00000280237 | ENSG00000173064 | HECTD4 | GBM,MESO,PCPG,STAD,THCA | PCPG | | ENSG00000280237 | ENSG00000173546 | CSPG4 | GBM,LGG,PRAD,SARC,STAD | | STAD | ENSG00000280237 | ENSG00000183397 | C19orf71 | GBM,MESO,PAAD,PCPG,SARC,THCA | PCPG | | ENSG00000280237 | ENSG00000197183 | NOL4L | GBM,MESO,PCPG,PRAD,UCS | PCPG | | ENSG00000280237 | ENSG00000213918 | DNASE1 | GBM,LGG,LUAD,MESO,PCPG,SARC,THCA,UCS | LUAD,PCPG | | ENSG00000280237 | ENSG00000151498 | ACAD8 | LGG,LUAD,MESO,SARC,TGCT | LUAD | | ENSG00000280237 | ENSG00000134253 | TRIM45 | LUAD,MESO,PRAD,SARC,THCA,UCS | LUAD | | ENSG00000280237 | ENSG00000197776 | KLHDC1 | LUAD,PCPG,PRAD,SARC,STAD,THCA | PCPG | STAD | ENSG00000280237 | ENSG00000064309 | CDON | MESO,STAD,TGCT,THCA,UCS | | STAD,THCA | ENSG00000280237 | ENSG00000069966 | GNB5 | MESO,PCPG,PRAD,SARC,STAD | PCPG | | ENSG00000280237 | ENSG00000088543 | C3orf18 | MESO,PRAD,SARC,STAD,THCA | | STAD | ENSG00000280237 | ENSG00000149582 | TMEM25 | MESO,PCPG,SARC,STAD,TGCT | | STAD | ENSG00000280237 | ENSG00000171368 | TPPP | MESO,PCPG,SARC,STAD,THCA | PCPG | THCA | ENSG00000280237 | ENSG00000111674 | ENO2 | PCPG,PRAD,SARC,STAD,THYM | PCPG | | ENSG00000280237 | ENSG00000132326 | PER2 | PCPG,PRAD,SARC,THCA,UCS | PCPG | |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | ENSG00000280237 | ENST00000624667 | NPC2 | ENSG00000119655 | ENST00000434013 | -0.1465 | 4712 | THCA | - | ENSG00000280237 | ENST00000624667 | NPC2 | ENSG00000119655 | ENST00000556009 | -0.1453 | 1007 | THCA | - |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000280237.1 | ENST00000624667.1 | 93 | 243 | 524 |
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