Home

Download

Statistics

Landscape

Help

Contact

lncRNA: ENSG00000280237

Summary for MIR4697HG

Gene summary

Gene information	Ensembl ID	ENSG00000280237
	Gene symbol	MIR4697HG
	Gene name
	HGNC
	Entrez ID
	Gene type	TEC
	Synonyms
	UniProtAcc

Top

Structure and expression level for MIR4697HG

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000280237	5.486764e+02	-1.487028e+00	1.279157e-01	-1.162506e+01	3.070000e-31	9.750000e-30	DOWN	THCA
ENSG00000280237	1.889789e+03	4.769349e+00	4.713898e-01	1.011763e+01	4.610000e-24	2.560000e-21	UP	PCPG
ENSG00000280237	3.553320e+02	1.157560e+00	2.472168e-01	4.682369e+00	2.840000e-06	8.660000e-06	UP	LUAD
ENSG00000280237	4.051792e+02	-1.557995e+00	3.083571e-01	-5.052566e+00	4.360000e-07	3.070000e-06	DOWN	STAD

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000280237	-3.154659e-01	1.521718e-14	THCA	2.085803e-13

Top

lncRNA-Protein interaction for MIR4697HG

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000116731	PRDM2	97.3	97.8787	Q13029	TF,Epi	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000168137	SETD5	95.1	97.9451	Q9C0A6	Epi	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000171316	CHD7	92.15	97.5072	Q9P2D1	Epi	ChIP-seq
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000140320	BAHD1	91.38	95.731	Q8TBE0	Epi	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000173575	CHD2	87.5	97.8201	O14647	Epi	ChIP-seq
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000104885	DOT1L	87.0	97.9039	Q8TEK3	TF,Epi	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000197724	PHF2	86.31	97.8917	O75151	Epi	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000118058	KMT2A	84.75	98.7828	Q03164	TF,Epi	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000182979	MTA1	82.71	92.4265	Q13330	Epi	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000101126	ADNP	77.15	97.6017	Q9H2P0	TF,Epi	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000111752	PHC1	72.07	96.575	P78364	Epi	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000167548	KMT2D	71.47	98.4668	O14686	Epi	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000272333	KMT2B	69.16	97.2216	Q9UMN6	TF,Epi	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000117625	RCOR3	59.03	96.6398	Q9P2K3	Epi	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000169057	MECP2	51.08	96.6954	P51608	TF,Epi	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000162409	PRKAA2	31.91	94.977	P54646	Epi	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000170322	NFRKB	97.44	94.27	Q6P4R8	Epi	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000181555	SETD2	96.24	97.2879	Q9BYW2	Epi	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000275023	MLLT6	86.97	96.419	P55198	Epi	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000114933	INO80D	86.71	95.924	Q53TQ3	Epi	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000196498	NCOR2	86.56	98.425	Q9Y618	Epi	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000112787	FBRSL1	79.91	96.0583	Q9HCM7	Epi	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000108799	EZH1	78.05	97.3255	Q92800	Epi	ChIP-seq
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000005339	CREBBP	76.21	98.5812	Q92793	Epi	ChIP-seq
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000115548	KDM3A	75.92	94.8889	Q9Y4C1	Epi	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000065717	TLE2	72.45	93.4218	Q04725	Epi	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000204406	MBD5	71.18	96.6945	Q9P267	Epi	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000119638	NEK9	63.51	96.683	Q8TD19	Epi	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000120071	KANSL1	61.61	97.731	Q7Z3B3	Epi	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000171456	ASXL1	60.3	97.0051	Q8IXJ9	Epi	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000111676	ATN1	53.16	94.9979	P54259	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000130254	SAFB2	97.85	97.9764	Q14151	TF,RBP	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000116731	PRDM2	97.3	97.8588	Q13029	TF,Epi	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000104885	DOT1L	87.0	97.885	Q8TEK3	TF,Epi	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000118058	KMT2A	84.75	98.7592	Q03164	TF,Epi	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000164916	FOXK1	80.45	95.7959	P85037	TF	ChIP-seq
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000101126	ADNP	77.15	97.5608	Q9H2P0	TF,Epi	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000105127	AKAP8	76.52	97.749	O43823	TF	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000272333	KMT2B	69.16	97.2346	Q9UMN6	TF,Epi	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000070476	ZXDC	66.79	96.0066	Q2QGD7	TF	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000198040	ZNF84	58.61	97.4178	P51523	TF	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000116604	MEF2D	52.6	95.791	Q14814	TF	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000169057	MECP2	51.08	96.6591	P51608	TF,Epi	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000053254	FOXN3	48.91	95.8463	O00409	TF	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000118922	KLF12	41.22	93.9176	Q9Y4X4	TF	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000185630	PBX1	40.63	96.4648	P40424	TF	ChIP-seq
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000148411	NACC2	40.42	95.9774	Q96BF6	TF	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000175395	ZNF25	28.55	97.1823	P17030	TF	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000256223	ZNF10	28.41	96.1985	P21506	TF	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000196378	ZNF34	27.3	97.1395	Q8IZ26	TF	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000278129	ZNF8	23.22	97.0944	P17098	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000130254	SAFB2	97.85	97.9532	Q14151	TF,RBP	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000004534	RBM6	80.6	97.9955	P78332	RBP	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000003756	RBM5	79.29	96.8217	P52756	RBP	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000064607	SUGP2	78.33	96.0171	Q8IX01	RBP	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000123908	AGO2	77.12	90.2465	Q9UKV8	RBP	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000163728	TTC14	64.2	97.2201	Q96N46	RBP	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000135870	RC3H1	60.46	97.2678	Q5TC82	RBP	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000100201	DDX17	59.52	96.4079	Q92841	RBP	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000164548	TRA2A	57.93	95.0075	Q13595	RBP	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000124193	SRSF6	55.05	96.9621	Q13247	RBP	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000129351	ILF3	54.89	97.7802	Q12906	RBP	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000184863	RBM33	54.84	97.2922	Q96EV2	RBP	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000167978	SRRM2	44.96	98.8478	Q9UQ35	RBP	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000149532	CPSF7	28.44	96.2982	Q8N684	RBP	PAR-CLIP
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000155858	LSM11	24.88	96.5419	P83369	RBP	NA
ENSG00000280237	ENST00000624667	MIR4697HG	ENSG00000104177	MYEF2	24.46	93.9165	Q9P2K5	RBP	NA

Top

lncRNA-DNA interaction for MIR4697HG

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

ARHGEF9,KBTBD6,ARHGEF17,NISCH,TSPYL2,DET1,TPPP,HSPG2,ATM,ACTC1,ARHGEF2,FLVCR1,ILF3,PRKAB2,MAPKBP1,RBM39,KLF12,LENG8,ANGEL2,DNAJC27,PER2,SH2B1,BRD1,PHKA2,PPP1R12C,ATN1,HSPB8,CEP57,UBE2G2,VASH1,CEP68,AKAP8,NLGN2,PRICKLE2,FAM168B,KAT7,ZXDC,TGFB1I1,MAPK8IP3,DCP1A,FEM1B,INTS3,DIP2C,SUGP2,N4BP2L2,DMTF1,ARMCX4,NEK3,TNS1,MLLT6,UNKL,NEXN,PHLDB1,CLASP1,KIAA0895L,INO80D,DNAJB5,SPIN3,MYL9,ADCY9,SAMD10,MTSS2,TBRG1,BIVM,DCAF8,PGAP1,KMT2B,PPP1R12A,KLHDC1,DMPK,CENATAC,TTC28,RNPC3,C14orf28,TENT4A,SAFB2,MSANTD2,TUBGCP6,PROSER1,WDR59,ZNF25,LRCH3,JPH2,MYO9A,ACAD8,GABBR1,RNF38,MRI1,NUMA1,DCAF16,EPN2,TCEAL1,TMEM8B,ZBED5,CCDC50,RPAP1,SGCB,GPM6B,EHBP1L1,CDON,SETD2,RICTOR,TTC14,ENAH,KLHL42,SLC4A3,NIBAN1,CCNT2,CALCOCO1,RC3H1,DACT3,AFAP1,FBXW8,EDC4,FAM76B,POGZ,NFRKB,BAHD1,ADCY5,PKD1,RIMKLB,LTO1,AGO2,TSC2,RBPMS,PHC1,PPIP5K1,CLCN6,LARGE1,ECHDC2,BMPR1A,SACS,C20orf194,SYT11,TAF1C,PPM1L,PCSK7,APBB2,ADNP,TNIK,MYEF2,SPATA6,DHX34,RNF150,ZCCHC14,CPSF7,NEK9,NCOR2,VPS26B,SH3BGR,ITGA7,LRIG2,EZH1,ZNF34,LRP6,KIAA0753,RABL2A,C3orf18,PDZD4,SESTD1,CAVIN2,TRIM45,DDX17,GNB5,SRRM2,NRBP2,CCDC9B,GSTM2,FILIP1L,SLC25A29,MIB2,SENP7,FOXN3,LMOD1,MECP2,DUSP3,MAP4K5,MBD5,ZC3H8,MARF1,ENO2,TTC21B,MCAM,HSF4,HERC2,ARGLU1,YJEFN3,PRKAA2,CTDSP2,PAXBP1,SETD5,TMOD2,FNBP4,KMT2D,WWTR1,PPP1R14A,BOD1L1,SLC25A23,SOGA1,CELF1,USP21,TLE2,LTBP4,KLC1,PRDM2,CHD2,TSTD2,AGO3,PCBP4,CRYZL1,IGSF9B,CCDC93,DFFB,PDLIM3,RASL12,BCHE,STK36,HOOK2,CACNA1H,HERC1,KANSL1,DPYSL3,ARHGEF4,ZNF8,NCKAP5L,ITPR1,NR2C2,PAN2,TRIM46,RERE,DIDO1,GOLGA8A,CDS2,SETD4,KDM2B,ALG9,FRY,RBM6,SZT2,CSPG4,NOL4L,CREBBP,TTBK2,SBF1,REEP1,AARSD1,LSM11,DUSP28,CCDC82,CLIP3,LPP,RBM5,CRMP1,NKTR,CRAMP1,MBTD1,PNN,TMEM25,DNASE1,C19orf71,MYH11,TTLL3,DOT1L,EPM2AIP1,GNG7,ZNF84,KLHL23,CENPJ,C3orf70,PARP6,SIK3,TNS2,POU6F1,TRA2A,WDR33,HECTD4,TMEM47,KMT2A,CASQ2,TPP2,REV1,TAGLN,NACC2,PARD6G,NCAM1,KHDC4,CFL2,DIXDC1,ASXL1,MEF2D,MIDEAS,STX2,PNISR,ASB2,ARHGEF25,SOS1,EIF4ENIF1,WBP1,RBM33,RNF214,ZNF10,MYLK

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

Top

lncRNA-RNA interaction for MIR4697HG

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

PRDX1,CLIC1,PPIB,DAD1,NPC2,NECAP2,RPN1,EDEM2,RHOG,ORMDL2

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000280237	ENST00000624667	exon_skip_8075	chr1:96806418-96806452	-12.71	-0.6052	PTBP2	ENST00000426398	Frame-shift
ENSG00000280237	ENST00000624667	exon_skip_97739	chr12:121244572-121244615	-12.74	-0.3861	CAMKK2	ENST00000324774,ENST00000402834,ENST00000404169	Frame-shift
ENSG00000280237	ENST00000624667	exon_skip_335378	chr2:237751199-237751271	-12.10	-0.2574	LRRFIP1	ENST00000392000	In-frame
ENSG00000280237	ENST00000624667	exon_skip_436488	chr5:96726793-96726859	-10.96	-0.2962	CAST	ENST00000341926,ENST00000395813	In-frame

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

Top

Variants for MIR4697HG

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

Top

lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000280237	ENSG00000008710	PKD1	ESCA,GBM,LUAD,MESO,PCPG,PRAD,SARC,STAD,THCA	PCPG
ENSG00000280237	ENSG00000012822	CALCOCO1	ESCA,GBM,PRAD,SARC,STAD,UCS		STAD
ENSG00000280237	ENSG00000046653	GPM6B	ESCA,PRAD,STAD,TGCT,THCA		STAD
ENSG00000280237	ENSG00000065534	MYLK	ESCA,PRAD,SARC,STAD,TGCT		STAD
ENSG00000280237	ENSG00000076706	MCAM	ESCA,PRAD,SARC,STAD,TGCT		STAD
ENSG00000280237	ENSG00000079308	TNS1	ESCA,PRAD,SARC,STAD,TGCT,THCA		STAD
ENSG00000280237	ENSG00000080854	IGSF9B	ESCA,GBM,LGG,PCPG,SARC,STAD	PCPG
ENSG00000280237	ENSG00000090006	LTBP4	ESCA,MESO,PRAD,STAD,THCA		STAD
ENSG00000280237	ENSG00000100628	ASB2	ESCA,PRAD,SARC,STAD,UCS		STAD
ENSG00000280237	ENSG00000101335	MYL9	ESCA,PRAD,SARC,STAD,TGCT		STAD
ENSG00000280237	ENSG00000103710	RASL12	ESCA,PRAD,SARC,STAD,TGCT		STAD
ENSG00000280237	ENSG00000104936	DMPK	ESCA,PRAD,SARC,STAD,THCA,UCS		STAD
ENSG00000280237	ENSG00000105270	CLIP3	ESCA,GBM,PCPG,PRAD,SARC,STAD,UCS	PCPG	STAD
ENSG00000280237	ENSG00000111077	TNS2	ESCA,MESO,PRAD,STAD,UCS		STAD
ENSG00000280237	ENSG00000114200	BCHE	ESCA,PRAD,SARC,STAD,TGCT		STAD
ENSG00000280237	ENSG00000114923	SLC4A3	ESCA,MESO,PCPG,PRAD,STAD,UCS	PCPG
ENSG00000280237	ENSG00000118729	CASQ2	ESCA,PRAD,SARC,STAD,UCS		STAD
ENSG00000280237	ENSG00000125503	PPP1R12C	ESCA,GBM,PAAD,PRAD,STAD		STAD
ENSG00000280237	ENSG00000125648	SLC25A23	ESCA,GBM,PAAD,SARC,STAD,THCA		STAD
ENSG00000280237	ENSG00000128872	TMOD2	ESCA,MESO,PCPG,PRAD,STAD	PCPG	STAD
ENSG00000280237	ENSG00000133392	MYH11	ESCA,PRAD,SARC,STAD,TGCT		STAD
ENSG00000280237	ENSG00000135842	NIBAN1	ESCA,LUAD,SARC,STAD,TGCT,THYM		STAD
ENSG00000280237	ENSG00000140682	TGFB1I1	ESCA,PRAD,SARC,STAD,TGCT		STAD
ENSG00000280237	ENSG00000145012	LPP	ESCA,PRAD,SARC,STAD,THCA		STAD
ENSG00000280237	ENSG00000147027	TMEM47	ESCA,PRAD,SARC,STAD,TGCT,THCA		STAD
ENSG00000280237	ENSG00000149591	TAGLN	ESCA,PRAD,SARC,STAD,TGCT		STAD
ENSG00000280237	ENSG00000149596	JPH2	ESCA,PRAD,SARC,STAD,TGCT		STAD
ENSG00000280237	ENSG00000150764	DIXDC1	ESCA,PRAD,SARC,STAD,THCA,UCS		STAD
ENSG00000280237	ENSG00000150995	ITPR1	ESCA,PRAD,SARC,STAD,THCA		STAD,THCA
ENSG00000280237	ENSG00000152137	HSPB8	ESCA,PRAD,SARC,STAD,TGCT		STAD
ENSG00000280237	ENSG00000154553	PDLIM3	ESCA,PRAD,SARC,STAD,TGCT,THCA,UCS		STAD,THCA
ENSG00000280237	ENSG00000159251	ACTC1	ESCA,PRAD,STAD,TGCT,UCS		STAD
ENSG00000280237	ENSG00000162409	PRKAA2	ESCA,SARC,STAD,THCA,UCS		STAD
ENSG00000280237	ENSG00000162614	NEXN	ESCA,PRAD,SARC,STAD,THCA		STAD,THCA
ENSG00000280237	ENSG00000163431	LMOD1	ESCA,PRAD,SARC,STAD,TGCT,THCA		STAD,THCA
ENSG00000280237	ENSG00000163637	PRICKLE2	ESCA,PRAD,SARC,STAD,THCA		STAD
ENSG00000280237	ENSG00000165410	CFL2	ESCA,PRAD,SARC,STAD,TGCT,THCA		STAD
ENSG00000280237	ENSG00000167641	PPP1R14A	ESCA,PRAD,SARC,STAD,TGCT		STAD
ENSG00000280237	ENSG00000168497	CAVIN2	ESCA,PRAD,STAD,TGCT,THCA		STAD,THCA
ENSG00000280237	ENSG00000170153	RNF150	ESCA,GBM,PRAD,SARC,STAD,THCA		STAD,THCA
ENSG00000280237	ENSG00000172465	TCEAL1	ESCA,PRAD,SARC,STAD,THCA		STAD
ENSG00000280237	ENSG00000173175	ADCY5	ESCA,GBM,PRAD,SARC,STAD,TGCT,THYM		STAD
ENSG00000280237	ENSG00000176533	GNG7	ESCA,MESO,PRAD,STAD,TGCT,THCA		STAD
ENSG00000280237	ENSG00000184205	TSPYL2	ESCA,LUAD,PCPG,PRAD,SARC,STAD		STAD
ENSG00000280237	ENSG00000184271	POU6F1	ESCA,GBM,PCPG,SARC,STAD,THCA	PCPG	STAD
ENSG00000280237	ENSG00000185437	SH3BGR	ESCA,PRAD,SARC,STAD,THCA		STAD
ENSG00000280237	ENSG00000187068	C3orf70	ESCA,GBM,PRAD,SARC,STAD		STAD
ENSG00000280237	ENSG00000187231	SESTD1	ESCA,PCPG,PRAD,SARC,STAD	PCPG
ENSG00000280237	ENSG00000188549	CCDC9B	ESCA,MESO,PRAD,SARC,STAD,THCA,THYM		STAD
ENSG00000280237	ENSG00000196557	CACNA1H	ESCA,GBM,PRAD,SARC,STAD,TGCT,THCA,UCS		STAD
ENSG00000280237	ENSG00000197380	DACT3	ESCA,GBM,PRAD,SARC,STAD		STAD
ENSG00000280237	ENSG00000240771	ARHGEF25	ESCA,PCPG,PRAD,STAD,THYM	PCPG	STAD
ENSG00000280237	ENSG00000067840	PDZD4	GBM,MESO,PCPG,PRAD,STAD,TGCT	PCPG	STAD
ENSG00000280237	ENSG00000072832	CRMP1	GBM,LGG,PCPG,PRAD,TGCT,UCS	PCPG
ENSG00000280237	ENSG00000111752	PHC1	GBM,MESO,PCPG,PRAD,SARC,STAD,THCA,UCS	PCPG
ENSG00000280237	ENSG00000136002	ARHGEF4	GBM,PCPG,PRAD,SARC,THCA	PCPG
ENSG00000280237	ENSG00000137094	DNAJB5	GBM,LGG,SARC,STAD,TGCT		STAD
ENSG00000280237	ENSG00000138834	MAPK8IP3	GBM,LUAD,PAAD,PCPG,UCS	LUAD,PCPG
ENSG00000280237	ENSG00000149294	NCAM1	GBM,LGG,PCPG,PRAD,STAD,THCA,UCS	PCPG	STAD,THCA
ENSG00000280237	ENSG00000151849	CENPJ	GBM,LGG,MESO,PRAD,THCA,UCS		THCA
ENSG00000280237	ENSG00000162769	FLVCR1	GBM,LGG,MESO,PCPG,SARC,TGCT	PCPG
ENSG00000280237	ENSG00000163590	PPM1L	GBM,PRAD,SARC,STAD,THCA		STAD
ENSG00000280237	ENSG00000165572	KBTBD6	GBM,LGG,MESO,PCPG,UCS	PCPG
ENSG00000280237	ENSG00000173064	HECTD4	GBM,MESO,PCPG,STAD,THCA	PCPG
ENSG00000280237	ENSG00000173546	CSPG4	GBM,LGG,PRAD,SARC,STAD		STAD
ENSG00000280237	ENSG00000183397	C19orf71	GBM,MESO,PAAD,PCPG,SARC,THCA	PCPG
ENSG00000280237	ENSG00000197183	NOL4L	GBM,MESO,PCPG,PRAD,UCS	PCPG
ENSG00000280237	ENSG00000213918	DNASE1	GBM,LGG,LUAD,MESO,PCPG,SARC,THCA,UCS	LUAD,PCPG
ENSG00000280237	ENSG00000151498	ACAD8	LGG,LUAD,MESO,SARC,TGCT	LUAD
ENSG00000280237	ENSG00000134253	TRIM45	LUAD,MESO,PRAD,SARC,THCA,UCS	LUAD
ENSG00000280237	ENSG00000197776	KLHDC1	LUAD,PCPG,PRAD,SARC,STAD,THCA	PCPG	STAD
ENSG00000280237	ENSG00000064309	CDON	MESO,STAD,TGCT,THCA,UCS		STAD,THCA
ENSG00000280237	ENSG00000069966	GNB5	MESO,PCPG,PRAD,SARC,STAD	PCPG
ENSG00000280237	ENSG00000088543	C3orf18	MESO,PRAD,SARC,STAD,THCA		STAD
ENSG00000280237	ENSG00000149582	TMEM25	MESO,PCPG,SARC,STAD,TGCT		STAD
ENSG00000280237	ENSG00000171368	TPPP	MESO,PCPG,SARC,STAD,THCA	PCPG	THCA
ENSG00000280237	ENSG00000111674	ENO2	PCPG,PRAD,SARC,STAD,THYM	PCPG
ENSG00000280237	ENSG00000132326	PER2	PCPG,PRAD,SARC,THCA,UCS	PCPG

Top

lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

Top

lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

Top

lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000280237	ENST00000624667	NPC2	ENSG00000119655	ENST00000434013	-0.1465	4712	THCA	-
ENSG00000280237	ENST00000624667	NPC2	ENSG00000119655	ENST00000556009	-0.1453	1007	THCA	-

Top

lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

Top

lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000280237.1	ENST00000624667.1	93	243	524

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential