 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | AGAP6,GGA3,NISCH,PMM2,GABPB2,TBC1D24,GPATCH8,LENG8,MZF1,UBE2G2,MYSM1,NRF1,ZXDC,MAPK8IP3,SUGP2,DMTF1,ZC3H7A,NHLRC3,TBRG1,RBM28,DCAF8,SF3B1,PRR14L,RNPC3,ANKMY1,CCDC14,PHF12,UGGT2,SETD2,CCNT2,MTG1,XPO4,POGZ,SMG1,ARHGEF38,ECHDC2,OGT,RBM25,POLG2,RBM15,MLH3,ATP11A,ATXN7,DDX17,SRRM2,SLC25A29,SLX4,RAD52,ACIN1,INO80,ENOSF1,ANKS3,ANKRD11,PAXBP1,CCNL1,WSB1,EML4,SETD5,ZFP62,GON4L,KMT2D,CELF1,KLC1,TBC1D2B,NFKBIZ,GOLGB1,CCDC93,TTC13,NBPF15,STK36,PASK,KANSL1,CCDC191,ACP6,NR2C2,DIDO1,PAM16,CREBBP,PIKFYVE,RBM5,ELF2,ATG2B,NKTR,ZFC3H1,CRAMP1,C19orf71,TTLL3,ARHGEF7,DDX42,ARHGEF11,WDR27,HECTD4,EME2,KHDC4,LRP5L,KATNIP,USP31,TEP1,GEN1,MAN2C1,TMEM63A,DYNC1LI2,DMXL2,CCDC57,RBM33,WDR37 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000280063 | ENSG00000068650 | ATP11A | CHOL,COAD,ESCA,LAML,LUAD,READ | READ | | | ENSG00000280063 | ENSG00000100068 | LRP5L | CHOL,COAD,ESCA,LUAD,READ | READ | | | ENSG00000280063 | ENSG00000132680 | KHDC4 | CHOL,COAD,ESCA,LUAD,READ | READ | | | ENSG00000280063 | ENSG00000138834 | MAPK8IP3 | CHOL,COAD,ESCA,LUAD,READ | READ | | | ENSG00000280063 | ENSG00000147162 | OGT | CHOL,COAD,ESCA,LUAD,READ | READ | | | ENSG00000280063 | ENSG00000162065 | TBC1D24 | CHOL,COAD,LAML,LUAD,READ | READ | | | ENSG00000280063 | ENSG00000162836 | ACP6 | CHOL,COAD,ESCA,LUAD,READ | READ | | | ENSG00000280063 | ENSG00000163482 | STK36 | CHOL,COAD,ESCA,LAML,LUAD,READ | READ | | | ENSG00000280063 | ENSG00000167615 | LENG8 | CHOL,COAD,ESCA,LUAD,READ | READ | | | ENSG00000280063 | ENSG00000183397 | C19orf71 | CHOL,COAD,ESCA,LUAD,READ | READ | | | ENSG00000280063 | ENSG00000184465 | WDR27 | CHOL,COAD,ESCA,LAML,READ | READ | | | ENSG00000280063 | ENSG00000196187 | TMEM63A | CHOL,COAD,ESCA,LUAD,READ | READ | | | ENSG00000280063 | ENSG00000197774 | EME2 | CHOL,COAD,LAML,LUAD,READ | READ | | | ENSG00000280063 | ENSG00000204149 | AGAP6 | CHOL,COAD,ESCA,LAML,READ | READ | | | ENSG00000280063 | ENSG00000214021 | TTLL3 | CHOL,COAD,ESCA,LAML,LUAD,READ | READ | | | ENSG00000280063 | ENSG00000115687 | PASK | COAD,ESCA,LAML,LUAD,READ | READ | | | ENSG00000280063 | ENSG00000168096 | ANKS3 | COAD,ESCA,LAML,LUAD,READ | READ | | | ENSG00000280063 | ENSG00000256525 | POLG2 | COAD,ESCA,LAML,LUAD,READ | READ | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000280063.1 | ENST00000624337.1 | 333 | 1300 | 299 |
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