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lncRNA: ENSG00000279865

Summary for RP11-69M1.6

Gene summary

Gene information	Ensembl ID	ENSG00000279865
	Gene symbol	RP11-69M1.6
	Gene name
	HGNC
	Entrez ID
	Gene type	TEC
	Synonyms
	UniProtAcc

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Structure and expression level for RP11-69M1.6

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000279865	8.012353e+01	1.018993e+00	3.040757e-01	3.351117e+00	8.048630e-04	3.118103e-03	UP	GBM

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID

Correlation

P-value

Cancer Type

Adjc.p-value

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lncRNA-Protein interaction for RP11-69M1.6

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

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lncRNA-DNA interaction for RP11-69M1.6

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

TRIR,NDUFB10,RPS17,MRPL52,BLOC1S1,C11orf1,DUT,RTRAF,UXT,ATP5F1E,ZBTB8OS,CFDP1,RPS29,MRPL55,EMG1,C12orf57,NDUFB8,PSMA2,SEM1,PET100,IMP3,SERGEF,NDUFA13,ARF5,ATP5MG,CDPF1,MRPL47,GADD45GIP1,SRP19,SNRPD2,TMUB1,EIF3F,HINT2,RPS27A,RSL24D1,RPL23,XAB2,C19orf53,BUD23,TTC1,BCL7C,MRPL28,NDUFA11,NPRL2,HSCB,RPL27,METTL5,HPF1,MIX23,RPL13A,DTYMK,RPL37A,TRAPPC2L,LSM3,ZNHIT1,UQCRB,PHKG2,BUD31,TIMM9,POLR2J,SS18L2,SWSAP1,LSM5,RFXANK,NDUFA3,COPS9,SVBP,STYXL1,STX10,ECI1,NAA38,SNU13,LRRC23,GTF2H5,TPT1,RPL36AL,CWC15,LYRM4,MPLKIP,ATP5MJ,DPY30,UBL5,RPS8,MAP2K2,RPS11,SF3B6,NELFE,METTL23,ALKBH7,TMEM258,MRPL22,STX8,BTF3,GEMIN6,NDUFB7,MVB12A,UBXN1,MRPS33,THYN1,PGLS,ATP5MK,SMDT1,YJU2,SEC61G,SUMO1,RPL35,NDUFA2,TAF10,COX4I1,C18orf21,SGF29,TIGD1,RPL36A,COA8,DYRK4,CENPS,RPS6,SERF2,RPS10,PSMB3,MRPS9,COMMD6,MRPL57,RPS24,CIAO2B,PYURF,TMA7,C2orf76,PFDN5,CCS,MRPL27,PSMG3,PSMG2,HMGN3,TPRKB,PSMB1,NDUFB1,DUSP28,SREK1IP1,POP5,NACA,CZIB,SYF2,RPS19BP1,HDDC2,COA5,RPA3,MICOS10,NSMCE1,COA6,SDHAF2,SCAND1,RPL23A,ATP5MC2,SSBP1,ATP5F1D,RPS13,CCDC12,PTRHD1,TOMM7,REX1BD,THOC7,COX7A2,ERCC5,SIRT6,RP9,NOP53,SMIM19,MRPL54,SRA1,ATP5IF1

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

Only predicted by TDF

ECI1,LAMTOR4,PSMD4,ATPIF1,RPL35,RPS23,RP9,HINT2,C6orf203,EIF3F,GTF2H5,RPSA,DYRK4,MAP2K2,PSMB3,NDUFA3,C14orf2,TIMM9,HSCB,POP5,C4orf27,PSMA2,GADD45GIP1,SGF29,ARIH2OS,PGLS,USMG5,NDUFB1,SHFM1,NDUFS5,MRPL52,UBXN1,SRP14

Exist in public source

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for RP11-69M1.6

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

TFIP11,ATP2A2,KMT2D,KIF2A,BAZ2A,VPS26C,EIF4G2,FLNA,CSNK1A1,AP3D1,MYH9,PLEKHM1,RNF123,ACTN4,SNX6,USP32,CARM1,LRP10,PI4KA,SSH1,RNF31,SMG6,ITGB1,EIF4G1,AMBRA1,SEC23A,KLHL5,MAN2B2,CLTC

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for RP11-69M1.6

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000279865	ENSG00000099385	BCL7C	DLBC,GBM,KIRP,THCA,THYM,UCS	GBM
ENSG00000279865	ENSG00000100209	HSCB	DLBC,GBM,KIRP,LAML,THCA,THYM	GBM
ENSG00000279865	ENSG00000106028	SSBP1	DLBC,GBM,KIRP,LAML,THCA,THYM	GBM
ENSG00000279865	ENSG00000106245	BUD31	DLBC,GBM,KIRP,LAML,THCA,THYM	GBM
ENSG00000279865	ENSG00000106400	ZNHIT1	DLBC,GBM,KIRP,THCA,THYM,UCS	GBM
ENSG00000279865	ENSG00000110700	RPS13	DLBC,GBM,KIRP,LAML,LGG,THCA,THYM,UCS	GBM
ENSG00000279865	ENSG00000123349	PFDN5	DLBC,GBM,KIRP,THCA,THYM,UCS	GBM
ENSG00000279865	ENSG00000125691	RPL23	DLBC,GBM,KIRP,LAML,LGG,THCA,THYM	GBM
ENSG00000279865	ENSG00000126756	UXT	DLBC,GBM,KIRP,LAML,THCA,THYM	GBM
ENSG00000279865	ENSG00000131469	RPL27	DLBC,GBM,LAML,LGG,THCA,THYM,UCS	GBM
ENSG00000279865	ENSG00000133112	TPT1	DLBC,GBM,LAML,LGG,THCA,THYM,UCS	GBM
ENSG00000279865	ENSG00000136942	RPL35	DLBC,GBM,KIRP,LAML,LGG,THCA,THYM	GBM
ENSG00000279865	ENSG00000137154	RPS6	DLBC,GBM,KIRP,LAML,LGG,THCA,THYM,UCS	GBM
ENSG00000279865	ENSG00000140264	SERF2	DLBC,GBM,KIRP,THCA,THYM,UCS	GBM
ENSG00000279865	ENSG00000142534	RPS11	DLBC,GBM,KIRP,LAML,LGG,THCA,THYM,UCS	GBM
ENSG00000279865	ENSG00000142541	RPL13A	DLBC,GBM,LAML,LGG,THCA,THYM,UCS	GBM
ENSG00000279865	ENSG00000142937	RPS8	DLBC,GBM,KIRP,LAML,LGG,THCA,THYM,UCS	GBM
ENSG00000279865	ENSG00000145337	PYURF	DLBC,GBM,KIRP,LAML,THCA,THYM,UCS	GBM
ENSG00000279865	ENSG00000167272	POP5	DLBC,GBM,KIRP,THCA,THYM	GBM
ENSG00000279865	ENSG00000188243	COMMD6	DLBC,GBM,KIRP,LAML,LGG,THCA,THYM	GBM
ENSG00000279865	ENSG00000198242	RPL23A	DLBC,GBM,LAML,LGG,THYM	GBM
ENSG00000279865	ENSG00000198258	UBL5	DLBC,GBM,KIRP,THCA,THYM	GBM
ENSG00000279865	ENSG00000213523	SRA1	DLBC,GBM,KIRP,THCA,THYM	GBM
ENSG00000279865	ENSG00000213741	RPS29	DLBC,GBM,LAML,LGG,THYM,UCS	GBM
ENSG00000279865	ENSG00000241343	RPL36A	DLBC,GBM,KIRP,LAML,THCA,THYM,UCS	GBM
ENSG00000279865	ENSG00000106399	RPA3	GBM,KIRP,LAML,THYM,UCS	GBM
ENSG00000279865	ENSG00000125743	SNRPD2	GBM,KIRP,LAML,THCA,THYM	GBM
ENSG00000279865	ENSG00000127922	SEM1	GBM,KIRP,LAML,THCA,THYM,UCS	GBM
ENSG00000279865	ENSG00000134825	TMEM258	GBM,KIRP,THCA,THYM,UCS	GBM
ENSG00000279865	ENSG00000143947	RPS27A	GBM,LAML,LGG,THCA,THYM,UCS	GBM
ENSG00000279865	ENSG00000144034	TPRKB	GBM,KIRP,LAML,THCA,THYM	GBM
ENSG00000279865	ENSG00000160124	MIX23	GBM,KIRP,LAML,THCA,THYM,UCS	GBM

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000279865	ENST00000624929	AMBRA1	ENSG00000110497	ENST00000526545	-0.6406	129	-	GBM
ENSG00000279865	ENST00000624929	RNF123	ENSG00000164068	ENST00000432042	-0.1143	342	-	GBM
ENSG00000279865	ENST00000624929	RNF123	ENSG00000164068	ENST00000443204	-0.1034	167	-	GBM
ENSG00000279865	ENST00000624929	RNF123	ENSG00000164068	ENST00000444689	-0.1055	119	-	GBM
ENSG00000279865	ENST00000624929	KMT2D	ENSG00000167548	ENST00000526209	-0.1305	113	-	GBM
ENSG00000279865	ENST00000624929	USP32	ENSG00000170832	ENST00000592339	-0.2543	1	-	GBM
ENSG00000279865	ENST00000624929	USP32	ENSG00000170832	ENST00000593071	-0.1317	608	-	GBM
ENSG00000279865	ENST00000624929	USP32	ENSG00000170832	ENST00000590297	-0.1422	671	-	GBM
ENSG00000279865	ENST00000624929	ATP2A2	ENSG00000174437	ENST00000553144	-0.1131	1203	-	GBM
ENSG00000279865	ENST00000624929	PI4KA	ENSG00000241973	ENST00000255882	-0.1074	1	-	GBM
ENSG00000279865	ENST00000624929	PI4KA	ENSG00000241973	ENST00000399213	-0.1074	1	-	GBM

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000279865.1	ENST00000624929.1	65	165	362

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential