lncRNA targets the enhancer region and positively regulates the gene expression. |
Only predicted by TDF | TNS4,LAMB3,ITGA6,DUSP7,IL4R,ITGA2,DIAPH1,TRIM29 | Exist in public source | NA |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name | LncEditing_322715 | ENSG00000279806.1 | chr17 | 40474051 | - | TEC | RP11-58O9.2 | ENST00000623381.1 | TEC | RP11-58O9.2-001 | LncEditing_322731 | ENSG00000279806.1 | chr17 | 40475171 | - | TEC | RP11-58O9.2 | ENST00000623381.1 | TEC | RP11-58O9.2-001 | LncEditing_322737 | ENSG00000279806.1 | chr17 | 40475220 | - | TEC | RP11-58O9.2 | ENST00000623381.1 | TEC | RP11-58O9.2-001 | LncEditing_322748 | ENSG00000279806.1 | chr17 | 40475278 | - | TEC | RP11-58O9.2 | ENST00000623381.1 | TEC | RP11-58O9.2-001 | LncEditing_322749 | ENSG00000279806.1 | chr17 | 40475280 | - | TEC | RP11-58O9.2 | ENST00000623381.1 | TEC | RP11-58O9.2-001 |
Edited-associated DElncRNAs in cancer. |
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LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change | ENSG00000279806 | LncEditing_322731 | HNSC | chr17_40475171_- | 1.454506e+01 | 1.002722e+01 | 1.863560e+00 | 5.785445e+00 | 7.232057e-09 | 9.193293e-09 | UP | ENSG00000279806 | LncEditing_322737 | HNSC | chr17_40475220_- | 1.464975e+01 | 8.492568e+00 | 1.271290e+00 | 9.744539e+00 | 1.946604e-22 | 4.492164e-22 | UP | ENSG00000279806 | LncEditing_322748 | HNSC | chr17_40475278_- | 1.490099e+01 | 1.012310e+01 | 1.792892e+00 | 6.264968e+00 | 3.729011e-10 | 4.994212e-10 | UP | ENSG00000279806 | LncEditing_322749 | HNSC | chr17_40475280_- | 1.399598e+01 | 1.072321e+01 | 2.602295e+00 | 4.915603e+00 | 8.850940e-07 | 1.045387e-06 | UP | ENSG00000279806 | LncEditing_322731 | CESC | chr17_40475171_- | 1.115086e+01 | 5.789125e+00 | 1.057376e+00 | 5.988602e+00 | 2.116530e-09 | 4.151654e-09 | UP | ENSG00000279806 | LncEditing_322748 | CESC | chr17_40475278_- | 1.118445e+01 | 5.845666e+00 | 1.068313e+00 | 6.125128e+00 | 9.061089e-10 | 1.873441e-09 | UP | ENSG00000279806 | LncEditing_322749 | CESC | chr17_40475280_- | 1.097626e+01 | 6.296238e+00 | 1.247156e+00 | 4.238671e+00 | 2.248465e-05 | 2.831400e-05 | UP | ENSG00000279806 | LncEditing_322731 | ESCA | chr17_40475171_- | 1.791408e+01 | 7.639938e+00 | 8.133646e-01 | 5.324813e+00 | 1.010570e-07 | 1.871162e-07 | UP | ENSG00000279806 | LncEditing_322748 | ESCA | chr17_40475278_- | 1.497750e+01 | 8.548562e+00 | 1.236029e+00 | 4.519079e+00 | 6.210915e-06 | 8.959448e-06 | UP |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value | ENSG00000279806 | LncEditing_322715 | -4.815742e-01 | 4.641893e-06 | 1.304748e-05 | ENSG00000279806 | LncEditing_322731 | -3.297975e-01 | 4.802568e-05 | 9.168540e-05 | ENSG00000279806 | LncEditing_322737 | -3.138667e-01 | 1.067882e-06 | 6.727654e-06 | ENSG00000279806 | LncEditing_322748 | -3.927654e-01 | 4.524517e-06 | 1.707720e-05 | ENSG00000279806 | LncEditing_322749 | -4.171913e-01 | 2.600491e-05 | 6.067811e-05 | ENSG00000279806 | LncEditing_322715 | -3.216581e-01 | 6.874069e-04 | 1.571955e-03 | ENSG00000279806 | LncEditing_322731 | -3.148666e-01 | 1.195680e-02 | 1.374838e-02 | ENSG00000279806 | LncEditing_322737 | -4.596207e-01 | 1.176832e-06 | 2.973385e-05 | ENSG00000279806 | LncEditing_322748 | -4.125002e-01 | 1.292211e-03 | 2.452422e-03 | ENSG00000279806 | LncEditing_322737 | -3.499165e-01 | 4.424800e-04 | 4.379649e-03 | ENSG00000279806 | LncEditing_322748 | -3.339568e-01 | 6.553215e-03 | 1.589155e-02 | ENSG00000279806 | LncEditing_322731 | -4.860300e-01 | 1.461671e-04 | 1.153096e-03 | ENSG00000279806 | LncEditing_322737 | -3.099872e-01 | 2.235176e-03 | 6.089090e-03 | ENSG00000279806 | LncEditing_322748 | -4.803880e-01 | 2.721251e-04 | 1.610073e-03 |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | ENSG00000279806 | ENSG00000091409 | ITGA6 | BLCA,HNSC,LUSC,PAAD,PRAD | LUSC | | ENSG00000279806 | ENSG00000131504 | DIAPH1 | BLCA,CESC,COAD,HNSC,READ | CESC | | ENSG00000279806 | ENSG00000131746 | TNS4 | BLCA,BRCA,CESC,COAD,ESCA,HNSC,LUSC,PAAD,PRAD,READ,STAD,THCA | CESC,COAD,ESCA,LUSC,READ,STAD | BRCA,PRAD | ENSG00000279806 | ENSG00000137699 | TRIM29 | BLCA,BRCA,CESC,PAAD,PRAD,THCA | CESC | BRCA,PRAD | ENSG00000279806 | ENSG00000164171 | ITGA2 | BLCA,BRCA,CESC,PRAD,READ | CESC | PRAD | ENSG00000279806 | ENSG00000196878 | LAMB3 | BLCA,BRCA,HNSC,PAAD,PRAD | | BRCA,PRAD |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000279806.1 | ENST00000623381.1 | 329 | 337 | 1326 |
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