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lncRNA: ENSG00000279799

Summary for AC006077.3

Gene summary

Gene information	Ensembl ID	ENSG00000279799
	Gene symbol	AC006077.3
	Gene name
	HGNC
	Entrez ID
	Gene type	TEC
	Synonyms
	UniProtAcc

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Structure and expression level for AC006077.3

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000279799	2.432484e+01	2.057828e+00	4.600735e-01	4.472825e+00	7.720000e-06	4.270000e-05	UP	CHOL
ENSG00000279799	2.734881e+01	1.270205e+00	2.955747e-01	4.297407e+00	1.730000e-05	1.124340e-04	UP	BLCA
ENSG00000279799	2.415362e+01	1.125134e+00	2.066384e-01	5.444939e+00	5.180000e-08	2.580000e-07	UP	UCEC

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000279799	5.840883e-01	2.529023e-05	CHOL	1.194892e-04

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lncRNA-Protein interaction for AC006077.3

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

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lncRNA-DNA interaction for AC006077.3

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for AC006077.3

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

TBC1D14,CNOT1,TRAF6,IDH3A,NF1,FAM168B,TNS3,NEK4,DIABLO,TXNDC5,QKI,DENND4C,SLC30A6,VPS4B,UHRF1BP1L,MYH9,SUSD6,RNF123,KDM3B,FCF1,AIDA,NT5C2,BECN1,RDX,DUSP3,HIPK1,KPNA6,RNF40,ATXN1L,FAM104A,SMCR8,UBR1,SEPTIN10,TRAPPC10,ACTR3,GNL3L,PCDHGC3,PPP1R12A,EAF1,PIP4K2C,IL1R1,PTPN11,SCYL2,TOX4,TBC1D15,ITGB1,EDEM1,BZW1,ARHGAP21,NEDD1,C11orf58,HECTD1,ADGRL2,MANEA,SLAIN2,ANKFY1,CDV3,DNAJC14,PCBP1,ARIH1,PSMC1,PUM1,VPS13B,CAP1,SEC24B,CLTC,ATRN,ITPRIPL2,MAN1A2,NCOA1,PCYOX1,ATP2A2,MRPL19,VGLL4,MACF1,SH3GLB1,NBR1,CTNNB1,ATP11B,ZC3H13,TOR1AIP1,LZIC,PKD2,PDPK1,M6PR,ATP2C1,PHF3,WWP1,SNX29,KTN1,OSBP,APAF1,BBX,CPEB4,TAF1,ILK,CDYL,STRN,TP53BP1,VPS37A,ERLIN2,PCNX1,SURF4,USP32,SH3BP5,SEC24D,VCL,KIDINS220,SGCB,IQGAP1,DYNC1I2,G3BP1,CDC27,DOCK7,ACOX1,SMARCA2,CLIP1,CLCN3,STAT3,SNTB2,CORO1C,SDCBP,SLC25A24,FBXW11,API5,ARNT,GANAB,SEC23A,GIT2,STK24,NCOA2,TMEM43,SLC25A25,UBE3C,TWF1,SNAP23,MKLN1,LUZP1,DDX3X,MPDZ,ASXL2,ROCK1,G3BP2,RNF169,MAPK1,RB1CC1,GOLGA7,UBR5,KDM1B,SMAD1,POLR2B,CNIH1,COPB2,FAM168A,TBC1D2B,MYCBP2,LPCAT3,SSR1,SPPL2A,NIPA2,ZFAND3,MYOF,ACVR1,SRFBP1,TANGO6,TPM4,PDLIM5,UEVLD,CDK17,ASH1L,DYNC1LI2,KBTBD4,BRPF3,YAP1,APP,MFSD1,ARL1,FOXN3,CERT1,NPTN,RAP1B,PTPN9,TMEM131,SSH1,OSBPL8,XRN1,SMG6,NCOA4,SF3A1,MED13L,SEPTIN2,KLHL5,BCKDHB,NUP98,BCL9L,ABHD5,IGF2R,LYSMD3,AZI2,ST13,TAF1B,ASAP1,ACTR2,SYNJ1,VAMP7,TRIP12,TRAM2,GTF2A1,GOLGA4,ABCA1,HMGXB4,TNPO1,NSF,SEC23B,PAIP2,PPP2CB,KIF2A,MED1,TFIP11,SOS1,EIF3L,TGOLN2,SNX4,HBP1,MORC3,EIF4G2,HPS5,NEK7,C21orf91,CSNK1A1,SLC30A5,YTHDF3,NAA50,CUL2,CAB39,PRKAR1A,WAC,BIRC6,ACADM,SEC31A,BACH1,MOSPD2,CYFIP1,AFF1,MIEF1,UGGT1,ABCE1,TAF2,TMEM184C,NSRP1,MRTFB,GGCX,PICALM,DENND5A,TEX2,RALB,FAM114A2,EVC,SNX18,F2R,ITFG1,SRRD,SLC30A7,FEM1B,CPSF2,ARCN1,FNDC3B,ATF1,SEC24C,HAUS2,CCNK,LATS1,NEMF,CTDSP2,AFAP1,ZHX1,FYCO1,ARFGAP3,GNA12,MCFD2,SPOPL,NDUFS1,SDAD1,NOMO2,PGM2,RAB6A

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000279799	ENST00000623591	exon_skip_430601	chr4:82842139-82842481	-36.55	-0.1125	SEC31A	ENST00000355196,ENST00000395310,ENST00000448323	In-frame
ENSG00000279799	ENST00000623591	exon_skip_44998	chr10:110132304-110132400	-9.81	-0.1557	ADD3	ENST00000356080	In-frame

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000279799	ENST00000623591	exon_skip_41813	chr10:68337857-68337996	-20.49	-0.2227	HNRNPH3	ENST00000265866	Frame-shift
ENSG00000279799	ENST00000623591	exon_skip_53559	chr10:101793912-101793998	-11.94	-0.2253	OGA	ENST00000361464	Frame-shift
ENSG00000279799	ENST00000623591	exon_skip_87733	chr12:120571190-120571291	-24.15	-0.2597	RNF10	ENST00000325954	Frame-shift
ENSG00000279799	ENST00000623591	exon_skip_92074	chr12:50142052-50142110	-6.78	-0.2825	CERS5	ENST00000317551	Frame-shift
ENSG00000279799	ENST00000623591	exon_skip_95407	chr12:95040475-95040597	-15.09	-0.1279	NR2C1	ENST00000333003	Frame-shift
ENSG00000279799	ENST00000623591	exon_skip_97655	chr12:120579773-120579923	-10.76	-0.1251	POP5	ENST00000357500	In-frame
ENSG00000279799	ENST00000623591	exon_skip_152672	chr17:42540949-42541206	-30.76	-0.1577	NAGLU	ENST00000225927	Frame-shift
ENSG00000279799	ENST00000623591	exon_skip_290158	chr17:42953723-42953778	-10.08	-0.5040	AARSD1	ENST00000427569	Frame-shift
ENSG00000279799	ENST00000623591	exon_skip_356108	chr20:34740362-34743341	-45.06	-0.1121	NCOA6	ENST00000359003,ENST00000374796	In-frame
ENSG00000279799	ENST00000623591	exon_skip_371367	chr3:9697710-9697866	-19.13	-0.1438	MTMR14	ENST00000296003	In-frame
ENSG00000279799	ENST00000623591	exon_skip_377198	chr3:123130479-123130616	-37.80	-0.3231	PDIA5	ENST00000316218	Frame-shift
ENSG00000279799	ENST00000623591	exon_skip_380242	chr3:186784961-186785101	-19.08	-0.1800	EIF4A2	ENST00000323963	Frame-shift
ENSG00000279799	ENST00000623591	exon_skip_382458	chr3:38131595-38131638	-11.06	-0.2911	ACAA1	ENST00000333167	Frame-shift
ENSG00000279799	ENST00000623591	exon_skip_387016	chr3:121788283-121788432	-15.75	-0.1079	IQCB1	ENST00000310864	Frame-shift
ENSG00000279799	ENST00000623591	exon_skip_430434	chr4:82356536-82356683	-13.76	-0.2752	HNRNPD	ENST00000313899	In-frame
ENSG00000279799	ENST00000623591	exon_skip_442657	chr5:74730259-74730398	-16.63	-0.1352	GFM2	ENST00000296805,ENST00000509430	Frame-shift
ENSG00000279799	ENST00000623591	exon_skip_445390	chr5:150403120-150403312	-32.85	-0.2147	CD74	ENST00000009530	In-frame
ENSG00000279799	ENST00000623591	exon_skip_470226	chr7:103307595-103307708	-11.01	-0.1327	PMPCB	ENST00000249269	Frame-shift
ENSG00000279799	ENST00000623591	exon_skip_476549	chr7:76013741-76013887	-21.55	-0.2134	STYXL1	ENST00000248600,ENST00000359697,ENST00000431581	Frame-shift
ENSG00000279799	ENST00000623591	exon_skip_511212	chrX:71555189-71555385	-22.74	-0.1404	OGT	ENST00000373719	Frame-shift
ENSG00000279799	ENST00000623591	exon_skip_514339	chrX:23713134-23713208	-9.45	-0.2554	ACOT9	ENST00000336430	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for AC006077.3

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000279799	ENST00000623591	ROCK1	ENSG00000067900	ENST00000399799	-0.1131	1	-	BLCA
ENSG00000279799	ENST00000623591	BZW1	ENSG00000082153	ENST00000452790	-0.2740	15	-	CHOL
ENSG00000279799	ENST00000623591	CNIH1	ENSG00000100528	ENST00000556113	-0.1631	1	-	CHOL
ENSG00000279799	ENST00000623591	SEC23A	ENSG00000100934	ENST00000548032	-0.1006	173	-	CHOL,BLCA,UCEC
ENSG00000279799	ENST00000623591	SEC23A	ENSG00000100934	ENST00000557280	-0.1387	1	-	CHOL,BLCA,UCEC
ENSG00000279799	ENST00000623591	SEC23A	ENSG00000100934	ENST00000553970	-0.1387	1	-	CHOL,BLCA,UCEC
ENSG00000279799	ENST00000623591	ABCA1	ENSG00000165029	ENST00000423487	-0.1031	59	-	CHOL
ENSG00000279799	ENST00000623591	ABCA1	ENSG00000165029	ENST00000374733	-0.1340	1	-	CHOL
ENSG00000279799	ENST00000623591	SMG6	ENSG00000070366	ENST00000536871	-0.2962	4	-	UCEC
ENSG00000279799	ENST00000623591	YAP1	ENSG00000137693	ENST00000531439	-0.7633	14	-	UCEC
ENSG00000279799	ENST00000623591	CORO1C	ENSG00000110880	ENST00000546705	-0.1219	312	-	BLCA,UCEC
ENSG00000279799	ENST00000623591	CORO1C	ENSG00000110880	ENST00000421578	-0.6182	8	-	BLCA,UCEC
ENSG00000279799	ENST00000623591	PCDHGC3	ENSG00000240184	ENST00000611950	-0.2117	106	-	BLCA,UCEC
ENSG00000279799	ENST00000623591	PCDHGC3	ENSG00000240184	ENST00000617641	-0.1024	1	-	BLCA,UCEC
ENSG00000279799	ENST00000623591	PCDHGC3	ENSG00000240184	ENST00000617222	-0.2892	316	-	BLCA,UCEC
ENSG00000279799	ENST00000623591	PCDHGC3	ENSG00000240184	ENST00000308177	-0.1024	1	-	BLCA,UCEC
ENSG00000279799	ENST00000623591	SEC24D	ENSG00000150961	ENST00000506622	-0.1154	1	-	CHOL
ENSG00000279799	ENST00000623591	NPTN	ENSG00000156642	ENST00000565325	-0.1043	1	-	UCEC
ENSG00000279799	ENST00000623591	NPTN	ENSG00000156642	ENST00000562924	-0.1077	1	-	UCEC
ENSG00000279799	ENST00000623591	PDLIM5	ENSG00000163110	ENST00000509357	-0.1356	1	-	CHOL,BLCA,UCEC
ENSG00000279799	ENST00000623591	PDLIM5	ENSG00000163110	ENST00000506632	-0.1152	16	-	CHOL,BLCA,UCEC
ENSG00000279799	ENST00000623591	SEPTIN10	ENSG00000186522	ENST00000437928	-0.1433	110	-	BLCA,UCEC
ENSG00000279799	ENST00000623591	AFAP1	ENSG00000196526	ENST00000360265	-0.1025	1	-	BLCA
ENSG00000279799	ENST00000623591	AFAP1	ENSG00000196526	ENST00000358461	-0.1025	1	-	BLCA
ENSG00000279799	ENST00000623591	AFAP1	ENSG00000196526	ENST00000420658	-0.1025	1	-	BLCA
ENSG00000279799	ENST00000623591	AFAP1	ENSG00000196526	ENST00000382543	-0.2134	1	-	BLCA
ENSG00000279799	ENST00000623591	VCL	ENSG00000035403	ENST00000624354	-0.1064	1	-	BLCA,UCEC
ENSG00000279799	ENST00000623591	EDEM1	ENSG00000134109	ENST00000443790	-0.1394	10	-	CHOL
ENSG00000279799	ENST00000623591	EDEM1	ENSG00000134109	ENST00000445686	-0.2807	1	-	CHOL
ENSG00000279799	ENST00000623591	SEC24B	ENSG00000138802	ENST00000399100	-0.2420	252	-	CHOL
ENSG00000279799	ENST00000623591	EAF1	ENSG00000144597	ENST00000449565	-0.1043	1	-	CHOL
ENSG00000279799	ENST00000623591	ABHD5	ENSG00000011198	ENST00000413300	-0.1939	126	-	CHOL
ENSG00000279799	ENST00000623591	TRAM2	ENSG00000065308	ENST00000182527	-0.1060	1	-	CHOL
ENSG00000279799	ENST00000623591	BCKDHB	ENSG00000083123	ENST00000369760	-0.2336	299	-	CHOL
ENSG00000279799	ENST00000623591	HECTD1	ENSG00000092148	ENST00000554471	-0.1151	1	-	CHOL
ENSG00000279799	ENST00000623591	TANGO6	ENSG00000103047	ENST00000261778	-0.1330	167	-	CHOL
ENSG00000279799	ENST00000623591	TANGO6	ENSG00000103047	ENST00000561856	-0.1013	81	-	CHOL
ENSG00000279799	ENST00000623591	MPDZ	ENSG00000107186	ENST00000538841	-0.1013	7	-	CHOL,BLCA,UCEC
ENSG00000279799	ENST00000623591	MPDZ	ENSG00000107186	ENST00000536827	-0.1766	7	-	CHOL,BLCA,UCEC
ENSG00000279799	ENST00000623591	MPDZ	ENSG00000107186	ENST00000447879	-0.1928	7	-	CHOL,BLCA,UCEC
ENSG00000279799	ENST00000623591	MPDZ	ENSG00000107186	ENST00000546205	-0.9900	168	-	CHOL,BLCA,UCEC
ENSG00000279799	ENST00000623591	MPDZ	ENSG00000107186	ENST00000494251	-0.1396	1	-	CHOL,BLCA,UCEC
ENSG00000279799	ENST00000623591	HPS5	ENSG00000110756	ENST00000537258	-0.1375	1	-	CHOL
ENSG00000279799	ENST00000623591	UHRF1BP1L	ENSG00000111647	ENST00000548712	-0.1092	39	-	CHOL
ENSG00000279799	ENST00000623591	LPCAT3	ENSG00000111684	ENST00000538910	-0.1146	1	-	CHOL
ENSG00000279799	ENST00000623591	MRPL19	ENSG00000115364	ENST00000358788	-0.1135	12	-	CHOL
ENSG00000279799	ENST00000623591	MRPL19	ENSG00000115364	ENST00000409374	-0.1349	1	-	CHOL
ENSG00000279799	ENST00000623591	GGCX	ENSG00000115486	ENST00000430215	-0.1725	86	-	CHOL
ENSG00000279799	ENST00000623591	GGCX	ENSG00000115486	ENST00000421496	-0.1345	1	-	CHOL
ENSG00000279799	ENST00000623591	GGCX	ENSG00000115486	ENST00000428479	-0.1046	1	-	CHOL
ENSG00000279799	ENST00000623591	IL1R1	ENSG00000115594	ENST00000409329	-0.1102	239	-	CHOL
ENSG00000279799	ENST00000623591	IL1R1	ENSG00000115594	ENST00000409288	-0.2003	109	-	CHOL
ENSG00000279799	ENST00000623591	IL1R1	ENSG00000115594	ENST00000422532	-0.1365	29	-	CHOL
ENSG00000279799	ENST00000623591	ACADM	ENSG00000117054	ENST00000420607	-0.1589	276	-	CHOL
ENSG00000279799	ENST00000623591	ACADM	ENSG00000117054	ENST00000528016	-0.1802	1	-	CHOL
ENSG00000279799	ENST00000623591	RDX	ENSG00000137710	ENST00000405097	-0.1126	1	-	CHOL
ENSG00000279799	ENST00000623591	RDX	ENSG00000137710	ENST00000528900	-0.1126	1	-	CHOL
ENSG00000279799	ENST00000623591	RDX	ENSG00000137710	ENST00000530301	-0.1126	1	-	CHOL
ENSG00000279799	ENST00000623591	RDX	ENSG00000137710	ENST00000534683	-0.1623	346	-	CHOL
ENSG00000279799	ENST00000623591	RDX	ENSG00000137710	ENST00000533678	-0.1241	56	-	CHOL
ENSG00000279799	ENST00000623591	GOLGA4	ENSG00000144674	ENST00000361924	-0.1319	1	-	CHOL
ENSG00000279799	ENST00000623591	GOLGA4	ENSG00000144674	ENST00000444882	-0.1628	1	-	CHOL
ENSG00000279799	ENST00000623591	GOLGA4	ENSG00000144674	ENST00000356847	-0.1628	1	-	CHOL
ENSG00000279799	ENST00000623591	GOLGA4	ENSG00000144674	ENST00000437131	-0.1628	1	-	CHOL
ENSG00000279799	ENST00000623591	SLC25A25	ENSG00000148339	ENST00000373068	-0.1114	1	-	CHOL,BLCA,UCEC
ENSG00000279799	ENST00000623591	SLC25A25	ENSG00000148339	ENST00000373069	-0.1114	1	-	CHOL,BLCA,UCEC
ENSG00000279799	ENST00000623591	SLC25A25	ENSG00000148339	ENST00000373066	-0.1114	1	-	CHOL,BLCA,UCEC
ENSG00000279799	ENST00000623591	SLC25A25	ENSG00000148339	ENST00000432073	-0.1114	1	-	CHOL,BLCA,UCEC
ENSG00000279799	ENST00000623591	SLC25A25	ENSG00000148339	ENST00000373064	-0.1114	1	-	CHOL,BLCA,UCEC
ENSG00000279799	ENST00000623591	ACOX1	ENSG00000161533	ENST00000588968	-0.1012	1	-	CHOL
ENSG00000279799	ENST00000623591	ACOX1	ENSG00000161533	ENST00000572047	-0.1191	1	-	CHOL
ENSG00000279799	ENST00000623591	ACOX1	ENSG00000161533	ENST00000589301	-0.1118	1	-	CHOL
ENSG00000279799	ENST00000623591	RNF123	ENSG00000164068	ENST00000327697	-0.1446	1	-	CHOL
ENSG00000279799	ENST00000623591	RNF123	ENSG00000164068	ENST00000432042	-0.1849	65	-	CHOL
ENSG00000279799	ENST00000623591	RNF123	ENSG00000164068	ENST00000457726	-0.1191	1	-	CHOL
ENSG00000279799	ENST00000623591	RNF123	ENSG00000164068	ENST00000443204	-0.1752	10	-	CHOL
ENSG00000279799	ENST00000623591	RNF123	ENSG00000164068	ENST00000433785	-0.1316	1	-	CHOL
ENSG00000279799	ENST00000623591	RNF123	ENSG00000164068	ENST00000444689	-0.1130	37	-	CHOL

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000279799.1	ENST00000623591.1	54	363	199

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential