lncRNA targets the enhancer region and positively regulates the gene expression. |
Only predicted by TDF | CLK4,SAP30L,PURA,PLSCR4,PLCD3,CCDC82,CALCOCO1,N4BP2L1,HOOK3,RNF217,FAXDC2,RBMS3,IGIP,PHF10,WDR27,MAP4,LMBRD1,SSPN,BBS2,KLHDC1,KANSL1L,ZMAT1,QKI,ZFP36L1,PLPP1 | Exist in public source | NA |
lncRNA targets the promoter region and positively regulates the gene expression. |
Only predicted by TDF | MAP4,CCDC82,RBMS3,GRAMD3,KPNA5,ZMAT1,N4BP2L1,LMBRD1,ZFP2,KANSL1L | Exist in public source | NA |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name | LncEditing_152331 | ENSG00000279118.1 | chr5 | 126496279 | + | TEC | RP11-517I3.2 | ENST00000624769.1 | TEC | RP11-517I3.2-001 | LncEditing_152333 | ENSG00000279118.1 | chr5 | 126496304 | + | TEC | RP11-517I3.2 | ENST00000624769.1 | TEC | RP11-517I3.2-001 | LncEditing_152335 | ENSG00000279118.1 | chr5 | 126496314 | + | TEC | RP11-517I3.2 | ENST00000624769.1 | TEC | RP11-517I3.2-001 | LncEditing_152336 | ENSG00000279118.1 | chr5 | 126496315 | + | TEC | RP11-517I3.2 | ENST00000624769.1 | TEC | RP11-517I3.2-001 | LncEditing_152339 | ENSG00000279118.1 | chr5 | 126496362 | + | TEC | RP11-517I3.2 | ENST00000624769.1 | TEC | RP11-517I3.2-001 | LncEditing_152342 | ENSG00000279118.1 | chr5 | 126496374 | + | TEC | RP11-517I3.2 | ENST00000624769.1 | TEC | RP11-517I3.2-001 | LncEditing_152347 | ENSG00000279118.1 | chr5 | 126496406 | + | TEC | RP11-517I3.2 | ENST00000624769.1 | TEC | RP11-517I3.2-001 | LncEditing_152348 | ENSG00000279118.1 | chr5 | 126496426 | + | TEC | RP11-517I3.2 | ENST00000624769.1 | TEC | RP11-517I3.2-001 | LncEditing_152349 | ENSG00000279118.1 | chr5 | 126496429 | + | TEC | RP11-517I3.2 | ENST00000624769.1 | TEC | RP11-517I3.2-001 | LncEditing_152351 | ENSG00000279118.1 | chr5 | 126496435 | + | TEC | RP11-517I3.2 | ENST00000624769.1 | TEC | RP11-517I3.2-001 | LncEditing_152352 | ENSG00000279118.1 | chr5 | 126496481 | + | TEC | RP11-517I3.2 | ENST00000624769.1 | TEC | RP11-517I3.2-001 | LncEditing_152353 | ENSG00000279118.1 | chr5 | 126496484 | + | TEC | RP11-517I3.2 | ENST00000624769.1 | TEC | RP11-517I3.2-001 | LncEditing_152357 | ENSG00000279118.1 | chr5 | 126497275 | + | TEC | RP11-517I3.2 | ENST00000624769.1 | TEC | RP11-517I3.2-001 | LncEditing_152360 | ENSG00000279118.1 | chr5 | 126497302 | + | TEC | RP11-517I3.2 | ENST00000624769.1 | TEC | RP11-517I3.2-001 | LncEditing_152363 | ENSG00000279118.1 | chr5 | 126497313 | + | TEC | RP11-517I3.2 | ENST00000624769.1 | TEC | RP11-517I3.2-001 |
Edited-associated DElncRNAs in cancer. |
|
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change | ENSG00000279118 | LncEditing_152336 | KIRC | chr5_126496315_+ | 2.584788e+00 | 1.984862e+00 | 2.624623e+00 | 6.803681e+00 | 1.019791e-11 | 1.605306e-11 | UP | ENSG00000279118 | LncEditing_152339 | KIRC | chr5_126496362_+ | 2.710623e+00 | 1.942634e+00 | 2.080689e+00 | 8.924173e+00 | 4.490402e-19 | 1.011021e-18 | UP | ENSG00000279118 | LncEditing_152333 | GBM | chr5_126496304_+ | 1.487369e+01 | 8.148769e+00 | 1.151930e+00 | 5.075255e+00 | 3.869776e-07 | 8.089532e-07 | UP | ENSG00000279118 | LncEditing_152335 | GBM | chr5_126496314_+ | 1.537811e+01 | 9.236821e+00 | 1.359786e+00 | 4.102022e+00 | 4.095551e-05 | 6.068316e-05 | UP | ENSG00000279118 | LncEditing_152342 | GBM | chr5_126496374_+ | 1.382899e+01 | 6.894202e+00 | 9.957780e-01 | 7.067927e+00 | 1.572650e-12 | 1.166740e-11 | UP | ENSG00000279118 | LncEditing_152347 | GBM | chr5_126496406_+ | 1.378743e+01 | 7.814774e+00 | 1.220885e+00 | 5.818723e+00 | 5.929907e-09 | 1.744471e-08 | UP | ENSG00000279118 | LncEditing_152348 | GBM | chr5_126496426_+ | 1.333408e+01 | 7.210571e+00 | 1.127481e+00 | 5.654153e+00 | 1.566164e-08 | 4.127123e-08 | UP | ENSG00000279118 | LncEditing_152351 | GBM | chr5_126496435_+ | 1.331129e+01 | 9.826154e+00 | 2.283357e+00 | 2.443572e+00 | 1.454265e-02 | 1.560345e-02 | UP | ENSG00000279118 | LncEditing_152352 | GBM | chr5_126496481_+ | 1.318291e+01 | 9.237444e+00 | 1.948926e+00 | 3.263113e+00 | 1.101956e-03 | 1.350731e-03 | UP | ENSG00000279118 | LncEditing_152353 | GBM | chr5_126496484_+ | 1.344738e+01 | 7.245454e+00 | 1.120854e+00 | 6.026305e+00 | 1.677507e-09 | 5.631133e-09 | UP | ENSG00000279118 | LncEditing_152357 | GBM | chr5_126497275_+ | 1.200293e+01 | 8.184478e+00 | 1.810203e+00 | 4.546715e+00 | 5.448981e-06 | 9.399202e-06 | UP | ENSG00000279118 | LncEditing_152360 | GBM | chr5_126497302_+ | 1.239050e+01 | 9.650523e+00 | 2.773500e+00 | 2.176419e+00 | 2.952391e-02 | 3.004383e-02 | UP | ENSG00000279118 | LncEditing_152363 | GBM | chr5_126497313_+ | 1.226325e+01 | 7.325372e+00 | 1.345230e+00 | 4.040483e+00 | 5.334130e-05 | 7.705913e-05 | UP | ENSG00000279118 | LncEditing_152331 | LGG | chr5_126496279_+ | 2.428617e+01 | 1.146878e+01 | 9.238533e-01 | 7.495456e+00 | 6.606846e-14 | 1.240541e-13 | UP | ENSG00000279118 | LncEditing_152333 | LGG | chr5_126496304_+ | 2.513498e+01 | 2.122227e+01 | 4.096391e+00 | 4.094798e+00 | 4.225368e-05 | 4.866411e-05 | UP | ENSG00000279118 | LncEditing_152335 | LGG | chr5_126496314_+ | 2.622724e+01 | 2.165325e+01 | 3.616863e+00 | 4.021208e+00 | 5.790048e-05 | 6.593184e-05 | UP | ENSG00000279118 | LncEditing_152336 | LGG | chr5_126496315_+ | 2.417225e+01 | 1.183954e+01 | 9.711199e-01 | 7.084082e+00 | 1.399693e-12 | 2.404339e-12 | UP | ENSG00000279118 | LncEditing_152342 | LGG | chr5_126496374_+ | 2.494720e+01 | 1.208158e+01 | 9.559601e-01 | 8.876108e+00 | 6.924080e-19 | 1.947570e-18 | UP | ENSG00000279118 | LncEditing_152347 | LGG | chr5_126496406_+ | 2.790316e+01 | 2.114213e+01 | 2.498079e+00 | 5.885232e+00 | 3.974953e-09 | 5.612634e-09 | UP | ENSG00000279118 | LncEditing_152348 | LGG | chr5_126496426_+ | 2.594005e+01 | 1.392280e+01 | 1.113918e+00 | 9.717911e+00 | 2.529180e-22 | 8.972871e-22 | UP | ENSG00000279118 | LncEditing_152349 | LGG | chr5_126496429_+ | 2.452873e+01 | 1.049950e+01 | 8.168925e-01 | 8.544166e+00 | 1.294681e-17 | 3.287932e-17 | UP | ENSG00000279118 | LncEditing_152353 | LGG | chr5_126496484_+ | 2.489390e+01 | 2.083881e+01 | 3.898342e+00 | 3.673311e+00 | 2.394278e-04 | 2.616657e-04 | UP | ENSG00000279118 | LncEditing_152357 | LGG | chr5_126497275_+ | 2.451149e+01 | 2.217254e+01 | 6.911592e+00 | 2.540600e+00 | 1.106625e-02 | 1.140551e-02 | UP | ENSG00000279118 | LncEditing_152331 | THCA | chr5_126496279_+ | 3.900860e+00 | 2.008822e+00 | 1.044449e+00 | 8.080320e+00 | 6.459729e-16 | 1.777880e-15 | UP | ENSG00000279118 | LncEditing_152336 | THCA | chr5_126496315_+ | 3.525839e+00 | 1.996651e+00 | 1.218941e+00 | 8.884517e+00 | 6.419913e-19 | 2.254349e-18 | UP | ENSG00000279118 | LncEditing_152339 | THCA | chr5_126496362_+ | 3.489223e+00 | 1.727207e+00 | 9.857413e-01 | 1.289451e+01 | 4.833343e-38 | 8.949008e-37 | UP |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value | ENSG00000279118 | LncEditing_152331 | -4.147757e-01 | 7.251645e-04 | 9.989021e-04 | ENSG00000279118 | LncEditing_152336 | -4.093155e-01 | 1.343662e-04 | 2.402234e-04 |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | ENSG00000279118 | ENSG00000012822 | CALCOCO1 | BRCA,GBM,KIRP,SKCM,THCA,THYM | | BRCA | ENSG00000279118 | ENSG00000114698 | PLSCR4 | BRCA,GBM,KIRP,LGG,SKCM,THYM | | BRCA | ENSG00000279118 | ENSG00000123096 | SSPN | BRCA,GBM,LGG,THCA,THYM | | BRCA | ENSG00000279118 | ENSG00000139597 | N4BP2L1 | BRCA,KIRC,KIRP,SKCM,THYM | | BRCA | ENSG00000279118 | ENSG00000149231 | CCDC82 | BRCA,KIRC,KIRP,THCA,THYM | | BRCA | ENSG00000279118 | ENSG00000170271 | FAXDC2 | BRCA,GBM,LGG,SKCM,THYM | | BRCA | ENSG00000279118 | ENSG00000197776 | KLHDC1 | BRCA,GBM,KIRC,KIRP,LGG,THYM | | BRCA |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000279118.1 | ENST00000624769.1 | 157 | 90 | 563 |
|