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lncRNA: ENSG00000279088

Summary for RP11-574K11.24

Gene summary

Gene information	Ensembl ID	ENSG00000279088
	Gene symbol	RP11-574K11.24
	Gene name
	HGNC
	Entrez ID
	Gene type	TEC
	Synonyms
	UniProtAcc

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Structure and expression level for RP11-574K11.24

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000279088	2.915901e+02	1.128623e+00	2.875320e-01	3.925207e+00	8.670000e-05	4.365610e-04	UP	GBM
ENSG00000279088	1.850204e+02	1.316448e+00	1.074098e-01	1.225631e+01	1.550000e-34	1.970000e-33	UP	KIRC
ENSG00000279088	1.427267e+02	1.050972e+00	1.539809e-01	6.825342e+00	8.770000e-12	6.690000e-11	UP	LIHC

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000279088	5.733768e-01	3.838642e-05	CHOL	1.559564e-04
ENSG00000279088	-4.656155e-01	4.268445e-06	KICH	1.017860e-05
ENSG00000279088	3.129077e-01	2.813770e-15	KIRC	1.211671e-14
ENSG00000279088	3.212225e-01	4.719808e-11	LIHC	1.954846e-10

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lncRNA-Protein interaction for RP11-574K11.24

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000279088	ENST00000625041	RP11-574K11.24	ENSG00000057935	MTA3	5.58	90.3607	Q9BTC8	Epi	NA
ENSG00000279088	ENST00000625041	RP11-574K11.24	ENSG00000147854	UHRF2	88.5	91.5065	Q96PU4	Epi	NA
ENSG00000279088	ENST00000625041	RP11-574K11.24	ENSG00000156860	FBRS	7.34	90.5478	Q9HAH7	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000279088	ENST00000625041	RP11-574K11.24	ENSG00000236287	ZBED5	46.04	92.4807	Q49AG3	TF	NA
ENSG00000279088	ENST00000625041	RP11-574K11.24	ENSG00000204231	RXRB	13.8	90.9425	P28702	TF	NA
ENSG00000279088	ENST00000625041	RP11-574K11.24	ENSG00000185507	IRF7	8.03	90.6919	Q92985	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000279088	ENST00000625041	RP11-574K11.24	ENSG00000013573	DDX11	81.62	91.5691	Q96FC9	RBP	NA
ENSG00000279088	ENST00000625041	RP11-574K11.24	ENSG00000139746	RBM26	61.85	94.1857	Q5T8P6	RBP	NA

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lncRNA-DNA interaction for RP11-574K11.24

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for RP11-574K11.24

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

ASB8,FAM168B,CPQ,DLST,VPS26C,PNPO,ATP6V1D,RMDN3,VPS4B,UHRF1BP1L,CHP1,BECN1,VPS41,DAG1,PSEN1,CLCN5,PLEKHB2,EIF4G1,SLAIN2,ATP6V0C,OS9,CLTC,ATRN,PDHX,L2HGDH,SDHC,ATP2A2,GOT2,CCDC47,BCL2L13,SNX19,VPS35L,PDPK1,KTN1,GPRC5B,EPDR1,MCCC2,HSPA8,ABCB7,CPEB4,LONP2,TMEM127,HIBCH,RNF111,USP32,LRP10,IQGAP1,ACOX1,CLIP1,RNF19B,CLPB,STRAP,ETFDH,IQGAP2,PRMT5,NCOA2,CCNI,MPDZ,SLC25A3,ALAS1,ILRUN,PRKAR2A,RAB11FIP1,USP9X,HSPA9,ZFYVE1,KIF13B,UEVLD,KBTBD4,RAB18,APP,ARL1,FOXN3,MAIP1,CERT1,WDR7,GALK2,ARF3,OSBPL8,SMG6,PCMT1,TMED1,KIAA0232,TMLHE,DDB1,ABHD5,ASCC3,SYNJ1,VAMP7,TRIP12,PPARA,NUBPL,SEC23B,OGDH,EIF4G2,SOS2,LARS2,SMG8,CAB39,ATP1A1,SDHA,CAPN1,ACADM,SEC31A,OSBPL1A,IL6ST,GOLM2,ZNF28,RPE,CHPT1,RTN4,HCCS,USP8,PICALM,ITFG1,PTGR1,ATF1,TMBIM6,ACAT1,BCKDHB,PSMD1,MCFD2,FNBP1L,NOMO2,RAB6A

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000279088	ENST00000625041	exon_skip_41813	chr10:68337857-68337996	-14.57	-0.1175	HNRNPH3	ENST00000265866	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_319223	chr19:43526200-43526349	-16.52	-0.1252	ETHE1	ENST00000292147	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_380242	chr3:186784961-186785101	-17.79	-0.1561	EIF4A2	ENST00000323963	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_6419	chr1:51756319-51756358	-6.61	-0.2066	OSBPL9	ENST00000428468	In-frame
ENSG00000279088	ENST00000625041	exon_skip_11029	chr1:154989559-154989707	-15.75	-0.1250	FLAD1	ENST00000292180	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_74009	chr11:64773429-64773505	-11.18	-0.2033	SF1	ENST00000377390	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_110959	chr14:20372732-20372857	-19.36	-0.2060	TEP1	ENST00000262715	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_114365	chr14:74290026-74290118	-12.85	-0.1669	ABCD4	ENST00000356924	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_138351	chr16:70469151-70469323	-20.04	-0.1401	FUK	ENST00000288078	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_309204	chr19:49181348-49181461	-14.21	-0.2090	TRPM4	ENST00000252826	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_319500	chr19:45413962-45414034	-11.13	-0.2226	ERCC1	ENST00000300853,ENST00000589165	In-frame
ENSG00000279088	ENST00000625041	exon_skip_370518	chr22:50247691-50247776	-12.18	-0.1504	HDAC10	ENST00000216271	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_374497	chr3:49999439-49999513	-8.91	-0.1255	RBM6	ENST00000266022	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_374551	chr3:50100531-50100605	-10.08	-0.1551	RBM5	ENST00000347869	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_377198	chr3:123130479-123130616	-13.10	-0.2673	PDIA5	ENST00000316218	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_382458	chr3:38131595-38131638	-8.79	-0.2254	ACAA1	ENST00000333167	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_446758	chr5:178212972-178213103	-16.06	-0.1656	PHYKPL	ENST00000308158	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_477099	chr7:92509328-92509411	-7.46	-0.1203	PEX1	ENST00000248633	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_4796	chr1:41007448-41007545	-16.75	-0.2094	CTPS1	ENST00000372616,ENST00000372621	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_52701	chr10:97468965-97469104	-16.34	-0.1472	MMS19	ENST00000370782,ENST00000438925	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_52891	chr10:98429790-98429889	-13.55	-0.1633	HPS1	ENST00000325103,ENST00000361490	In-frame
ENSG00000279088	ENST00000625041	exon_skip_53559	chr10:101793912-101793998	-10.17	-0.1287	OGA	ENST00000361464	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_66482	chr11:126274926-126275021	-10.02	-0.1354	FOXRED1	ENST00000263578	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_66800	chr11:130123611-130123779	-15.32	-0.1169	APLP2	ENST00000263574	In-frame
ENSG00000279088	ENST00000625041	exon_skip_79575	chr12:6727925-6728001	-8.89	-0.1778	COPS7A	ENST00000229251,ENST00000534877,ENST00000534947,ENST00000539735,ENST00000543155	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_85538	chr12:71894324-71894375	-8.91	-0.1980	TBC1D15	ENST00000550746	In-frame
ENSG00000279088	ENST00000625041	exon_skip_87733	chr12:120571190-120571291	-10.40	-0.1156	RNF10	ENST00000325954	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_92074	chr12:50142052-50142110	-7.08	-0.1416	CERS5	ENST00000317551	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_95407	chr12:95040475-95040597	-11.54	-0.1059	NR2C1	ENST00000333003	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_111863	chr14:23565815-23565892	-12.93	-0.1901	AP1G2	ENST00000308724,ENST00000397120	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_139933	chr16:90035632-90035687	-8.57	-0.2597	GAS8	ENST00000268699	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_290158	chr17:42953723-42953778	-9.67	-0.1896	AARSD1	ENST00000427569	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_292904	chr17:69251746-69251866	-11.08	-0.1086	ABCA5	ENST00000392676,ENST00000588877	In-frame
ENSG00000279088	ENST00000625041	exon_skip_302168	chr19:10680345-10680443	-11.04	-0.1299	ILF3	ENST00000590261	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_313557	chr19:5786748-5786845	-15.22	-0.1654	DUS3L	ENST00000309061	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_324294	chr2:27774423-27774530	-12.85	-0.1285	MRPL33	ENST00000296102	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_326885	chr2:74490024-74490127	-16.88	-0.1796	TTC31	ENST00000233623	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_333962	chr2:219247112-219247246	-13.44	-0.1244	STK16	ENST00000396738,ENST00000409638	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_335558	chr2:240596680-240596942	-23.90	-0.1026	CAPN10	ENST00000391984	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_353131	chr20:58669290-58669453	-19.22	-0.1216	STX16	ENST00000371141	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_358821	chr20:63943652-63943669	-4.44	-0.4036	UCKL1	ENST00000354216	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_370525	chr22:50250426-50250523	-11.45	-0.1287	HDAC10	ENST00000216271	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_384420	chr3:49812647-49812738	-13.44	-0.3840	UBA7	ENST00000333486	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_433210	chr4:177436275-177436351	-10.93	-0.1735	AGA	ENST00000264595	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_442657	chr5:74730259-74730398	-10.14	-0.1389	GFM2	ENST00000296805,ENST00000509430	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_445390	chr5:150403120-150403312	-17.38	-0.1107	CD74	ENST00000009530	In-frame
ENSG00000279088	ENST00000625041	exon_skip_466137	chr7:48103296-48103411	-18.51	-0.1833	UPP1	ENST00000331803,ENST00000395564	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_470226	chr7:103307595-103307708	-12.35	-0.1488	PMPCB	ENST00000249269	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_511212	chrX:71555189-71555385	-19.80	-0.1414	OGT	ENST00000373719	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_374581	chr3:50110378-50110463	-11.51	-0.1439	RBM5	ENST00000347869	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_129597	chr15:75363998-75364188	-18.61	-0.1011	MAN2C1	ENST00000267978	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_52671	chr10:97461495-97461622	-16.38	-0.3412	MMS19	ENST00000370782,ENST00000438925	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_374375	chr3:49675182-49675309	-17.00	-0.1683	APEH	ENST00000296456	Frame-shift
ENSG00000279088	ENST00000625041	exon_skip_476008	chr7:65970281-65970366	-13.29	-0.1726	GUSB	ENST00000304895	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID	miRNA ID	LncRNA ENST ID	Binding site in lncRNA	Score	Energy	Align Len	Public source
ENSG00000279088	hsa-mir-22	ENST00000625041	chr10:73743268-73743356	204.00	-74.24	87	NA
ENSG00000279088	hsa-mir-22	ENST00000625041	chr10:73743413-73743493	190.00	-70.55	76	NA
ENSG00000279088	hsa-mir-22	ENST00000625041	chr10:73743981-73744067	158.00	-68.56	75	NA
ENSG00000279088	hsa-mir-22	ENST00000625041	chr10:73743824-73743911	157.00	-69.21	74	NA
ENSG00000279088	hsa-mir-22	ENST00000625041	chr10:73744135-73744223	145.00	-63.25	85	NA
ENSG00000279088	hsa-mir-22	ENST00000625041	chr10:73743077-73743156	144.00	-58.79	76	NA
ENSG00000279088	hsa-mir-22	ENST00000625041	chr10:73743553-73743641	140.00	-68.02	91	NA

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Variants for RP11-574K11.24

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000279088	ENST00000625041	BCKDHB	ENSG00000083123	ENST00000369760	-0.2096	349	-	KIRC,LIHC
ENSG00000279088	ENST00000625041	L2HGDH	ENSG00000087299	ENST00000261699	-0.1992	1138	-	KIRC
ENSG00000279088	ENST00000625041	L2HGDH	ENSG00000087299	ENST00000555423	-0.1971	1014	-	KIRC
ENSG00000279088	ENST00000625041	WDR7	ENSG00000091157	ENST00000589935	-0.1074	418	-	GBM
ENSG00000279088	ENST00000625041	ARF3	ENSG00000134287	ENST00000541959	-3.6250	305	-	GBM
ENSG00000279088	ENST00000625041	APP	ENSG00000142192	ENST00000358918	-0.4338	253	-	GBM
ENSG00000279088	ENST00000625041	ATP1A1	ENSG00000163399	ENST00000440951	-0.1398	877	-	KIRC
ENSG00000279088	ENST00000625041	CHP1	ENSG00000187446	ENST00000560397	-2.9400	794	-	GBM
ENSG00000279088	ENST00000625041	CHP1	ENSG00000187446	ENST00000560965	-0.1146	189	-	GBM
ENSG00000279088	ENST00000625041	ILRUN	ENSG00000196821	ENST00000374021	-0.1537	177	-	GBM
ENSG00000279088	ENST00000625041	LARS2	ENSG00000011376	ENST00000414984	-0.2119	1102	-	KIRC
ENSG00000279088	ENST00000625041	GPRC5B	ENSG00000167191	ENST00000569847	-0.1297	1060	-	GBM,KIRC
ENSG00000279088	ENST00000625041	KIF13B	ENSG00000197892	ENST00000523130	-1.7900	251	-	GBM,KIRC
ENSG00000279088	ENST00000625041	DAG1	ENSG00000173402	ENST00000435508	-0.1883	248	-	KIRC
ENSG00000279088	ENST00000625041	UHRF1BP1L	ENSG00000111647	ENST00000548712	-0.1296	210	-	GBM
ENSG00000279088	ENST00000625041	RTN4	ENSG00000115310	ENST00000438462	-0.4633	634	-	GBM
ENSG00000279088	ENST00000625041	ACADM	ENSG00000117054	ENST00000420607	-0.1030	98	-	KIRC,LIHC
ENSG00000279088	ENST00000625041	ACADM	ENSG00000117054	ENST00000528016	-0.1235	1	-	KIRC,LIHC
ENSG00000279088	ENST00000625041	ITFG1	ENSG00000129636	ENST00000565262	-0.2984	4	-	GBM
ENSG00000279088	ENST00000625041	CLCN5	ENSG00000171365	ENST00000482218	-0.1429	888	-	KIRC
ENSG00000279088	ENST00000625041	ALAS1	ENSG00000023330	ENST00000493402	-0.2326	837	-	KIRC,LIHC
ENSG00000279088	ENST00000625041	ACAT1	ENSG00000075239	ENST00000528370	-0.1095	230	-	KIRC,LIHC
ENSG00000279088	ENST00000625041	PTGR1	ENSG00000106853	ENST00000538962	-0.1726	261	-	KIRC
ENSG00000279088	ENST00000625041	GOT2	ENSG00000125166	ENST00000568368	-0.1044	711	-	GBM,KIRC,LIHC
ENSG00000279088	ENST00000625041	IQGAP2	ENSG00000145703	ENST00000396234	-0.1436	1036	-	KIRC
ENSG00000279088	ENST00000625041	IQGAP2	ENSG00000145703	ENST00000502745	-0.4095	694	-	KIRC
ENSG00000279088	ENST00000625041	HIBCH	ENSG00000198130	ENST00000622246	-0.1204	756	-	KIRC
ENSG00000279088	ENST00000625041	HIBCH	ENSG00000198130	ENST00000410045	-0.1102	757	-	KIRC
ENSG00000279088	ENST00000625041	HIBCH	ENSG00000198130	ENST00000414928	-0.2909	1112	-	KIRC
ENSG00000279088	ENST00000625041	ATP6V1D	ENSG00000100554	ENST00000556058	-0.1032	428	-	GBM
ENSG00000279088	ENST00000625041	CERT1	ENSG00000113163	ENST00000261415	-0.6220	906	-	GBM

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID	lncRNA-miRNA-mRNA	Cancer Types
ENSG00000279088	RP11-574K11.24,hsa-mir-22,RXRB	KICH,CHOL,LGG,UVM,KIRP
ENSG00000279088	RP11-574K11.24,hsa-mir-22,CRMP1	KICH,CHOL,LGG,UVM,KIRP
ENSG00000279088	RP11-574K11.24,hsa-mir-22,ATAT1	KICH,CHOL,LGG,UVM,KIRP
ENSG00000279088	RP11-574K11.24,hsa-mir-22,USP21	KICH,CHOL,LGG,UVM,KIRP
ENSG00000279088	RP11-574K11.24,hsa-mir-22,C2orf68	KICH,CHOL,LGG,UVM,KIRP
ENSG00000279088	RP11-574K11.24,hsa-mir-22,RING1	KICH,CHOL,LGG,UVM,KIRP
ENSG00000279088	RP11-574K11.24,hsa-mir-22,BRD2	KICH,CHOL,LGG,UVM,KIRP
ENSG00000279088	RP11-574K11.24,hsa-mir-22,NCOA5	KICH,CHOL,LGG,UVM,KIRP
ENSG00000279088	RP11-574K11.24,hsa-mir-22,EHMT2	KICH,CHOL,LGG,UVM,KIRP
ENSG00000279088	RP11-574K11.24,hsa-mir-22,SMARCC2	KICH,CHOL,LGG,UVM,KIRP
ENSG00000279088	RP11-574K11.24,hsa-mir-22,SSRP1	KICH,CHOL,LGG,UVM,KIRP
ENSG00000279088	RP11-574K11.24,hsa-mir-22,GPANK1	KICH,CHOL,LGG,UVM,KIRP
ENSG00000279088	RP11-574K11.24,hsa-mir-22,DPF2	KICH,CHOL,LGG,UVM,KIRP
ENSG00000279088	RP11-574K11.24,hsa-mir-22,FBXO46	KICH,CHOL,LGG,UVM,KIRP
ENSG00000279088	RP11-574K11.24,hsa-mir-22,MDC1	KICH,CHOL,LGG,UVM,KIRP
ENSG00000279088	RP11-574K11.24,hsa-mir-22,CXXC1	KICH,CHOL,LGG,UVM,KIRP
ENSG00000279088	RP11-574K11.24,hsa-mir-22,RGL2	KICH,CHOL,LGG,UVM,KIRP
ENSG00000279088	RP11-574K11.24,hsa-mir-22,VPS52	KICH,CHOL,LGG,UVM,KIRP
ENSG00000279088	RP11-574K11.24,hsa-mir-22,WRNIP1	KICH,CHOL,LGG,UVM,KIRP
ENSG00000279088	RP11-574K11.24,hsa-mir-22,PRR3	KICH,CHOL,LGG,UVM,KIRP
ENSG00000279088	RP11-574K11.24,hsa-mir-22,KDM5B	KICH,CHOL,LGG,UVM,KIRP
ENSG00000279088	RP11-574K11.24,hsa-mir-22,CASC3	KICH,CHOL,LGG,UVM,KIRP
ENSG00000279088	RP11-574K11.24,hsa-mir-22,WBP1	KICH,CHOL,LGG,UVM,KIRP
ENSG00000279088	RP11-574K11.24,hsa-mir-22,NELFE	KICH,CHOL,LGG,UVM,KIRP

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000279088.1	ENST00000625041.1	76	18	248

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential