lncRNA targets the enhancer region and positively regulates the gene expression. |
Only predicted by TDF | TRIR,NDUFB10,MRPL52,BLOC1S1,SCNM1,PRADC1,NDUFS6,RTRAF,ARL16,PYM1,UXT,SLIRP,ATP5F1E,AP2S1,PEF1,NDUFS3,PRDX5,ZBTB8OS,UBA52,NUDC,TRMU,MRPL55,NUP43,EMG1,KRT10,C12orf57,MRPS26,NDUFB8,COX6B1,PSMA2,SEM1,SNRNP25,PSMB7,NDUFS8,PET100,NDUFA13,CHCHD5,ATP5MG,WDR83OS,DPM2,DYNC2I2,NDUFAB1,SWI5,MRPL47,GADD45GIP1,SRP19,SNRPD2,SNF8,NDUFB11,HRAS,HINT2,MPDU1,RPS27A,PCMT1,C19orf53,LSM10,TIMM13,MTIF3,TIMM17B,MRPL20,BUD23,TTC1,BCL7C,MRPL28,MRPS12,NDUFB9,TBP,NDUFA11,MRPL2,HSCB,COQ3,ARPC5L,UCHL3,MIX23,HPF1,PFDN2,NDUFAF4,RPL37A,TRAPPC2L,LSM3,ZNHIT1,GFER,UQCRB,PHKG2,PMF1,SURF1,TIMM10,BUD31,ASF1A,POLR2J,SS18L2,COMMD7,COA3,ZUP1,LSM5,RFXANK,LAMTOR2,SURF2,RAB13,HBS1L,NDUFA3,PPIH,PA2G4,SEC61B,COQ4,WDR45,COPS9,MRPL24,RMND1,MICOS13,STX10,SMPD2,UBL7,ECI1,ARMC5,PSMC3,NDUFB2,LSM4,UQCR11,C1orf50,PSMD13,NAA38,GTF2H5,USE1,TMEM223,TMEM208,JTB,RAB4B,TMEM86B,TBCA,PDCD2,UQCC2,RPL36AL,ERI3,CWC15,ILKAP,VKORC1,LYRM4,COX17,ATP5MJ,SLC25A10,PSENEN,SSU72,DPY30,DCXR,TMEM242,UBL5,PPIE,MRPL11,TXNDC17,UROD,FAM50A,MAP2K2,BAD,NAA10,HSD17B10,NELFE,COX7B,WDR83,ALKBH7,TMEM258,MRPL22,MYL6,GEMIN7,STX8,PSMA4,TXNL4A,BABAM1,MRPL14,GPATCH3,NDUFB7,C11orf98,LTV1,PIH1D1,ELP5,MZT2B,PGP,UBXN1,CHMP2A,BRMS1,MRPS15,CFAP298,MANF,MYDGF,PFDN6,THOC6,RBM42,ATP5MK,SMDT1,SEC63,YJU2,PQBP1,SEC61G,LENG1,SUMO1,RPL35,NDUFA2,AUP1,TAF10,RNF25,COX4I1,IFI27L2,CLIC1,FDX2,C18orf21,LYAR,MCAT,NFKBIL1,MBD3,POLR2L,RPL36A,COA8,CENPS,SERF2,RPS10,DYNLT1,PSMB3,OAZ1,ATOX1,COMMD1,MTLN,TRPT1,EBP,GINM1,MRPS2,NDUFA8,FAM229B,VPS4A,EIF2B3,SPATA2L,ZNF593,MRPS9,MED19,HDAC2,COMMD6,CNPY3,ARFRP1,SMIM12,RPS24,CIAO2B,MCRIP2,PYURF,TMA7,GSTO1,PFDN5,AAMDC,MRPL27,PSMG3,COX6C,NOL7,MYL6B,UQCR10,C19orf25,FRG1,ARPC4,CCDC167,TPRKB,NEDD8,NDUFB1,PSMB1,PSMC5,SREK1IP1,TSR3,NDUFA1,RPS19BP1,SMIM4,RNASEH2C,HDDC2,ELOF1,METTL26,MICOS10,COA6,NSMCE1,SDHAF2,UBE2L3,PPAN,SCAND1,ATP5MC2,KATNA1,PPP1R14B,CKLF,ATP5F1D,NDUFA6,HSPBP1,DGCR6L,CCDC12,EIF3K,PTRHD1,NDUFAF2,ISOC2,THOC7,SFT2D1,TFPT,COX7A2,SIRT6,DDT,MCRIP1,RP9,HEBP2,MRPL54,FAM174C,SNRPB2,NOSIP,SRA1,ENKD1,FKBP2,NDUFAF8,ATP5IF1,IMMP1L | Exist in public source | NA |
lncRNA targets the promoter region and positively regulates the gene expression. |
Only predicted by TDF | PA2G4,NDUFA2,RP9,VPS4A,NUDC,PSMB3,MYL6B,CCDC167,ASF1A,PFDN4,OXLD1,FAM32A,IMMP1L,MRPL52,UBXN1,PARK7,TRMU,PQBP1,TBP,GPATCH3,ELOF1,LSM10,NOSIP,PSMB6,PSMB1,PCMT1,NDUFAF4,FKBPL,NSMCE1,ATP5D,SNRPC,CHMP2A,PIH1D1,MZT2B,COX6A1,ZUFSP,NDUFB1,SHFM1,TIMM17B,MRPL24,LAMTOR4,COX17,PSMD4,PRDX5,COQ3,HINT2,JTB,C6orf203,HBS1L,UBALD2,AURKAIP1,NDUFA3,C14orf2,HSCB,COX8A,PSMA2,NDUFB11,NENF,MYL6,RBM42,SURF1,NAA10,NT5C,ADRM1,SAT2,NDUFS5,C19orf25,ECI1,SCNM1,ATPIF1,NUP43,FAM195B,C21orf59,COA6,RPL35,ARPC5L,POLR2J,GTF2H5,WDR13,MAP2K2,PPAN,BABAM1,GADD45GIP1,NDUFA8,TRMT112,USMG5,SLC25A10,UBA52,UXT | Exist in public source | NA |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | APAF1,RNF123,RNF31,DHX36,SMG6,SF3A1,BCKDHA,CARM1,GNL3L | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000278974.1 | ENST00000624757.1 | 96 | 288 | 1 |
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