lncRNA targets the enhancer region and positively regulates the gene expression. |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | CNOT1,CNIH1,SH3GLB1,HBP1,SEC62,VPS4B,MYH9,CPEB4,HUWE1,ACADM,SEC31A,KBTBD4,ATXN1L,MYADM,PSEN1,TMEM184C,DYNC1I2,NFKB1,SMG6,BTD,SEC23A,ABHD5,ACTR2,CAP1 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000278876 | ENST00000623802 | exon_skip_11029 | chr1:154989559-154989707 | -17.47 | -0.1304 | FLAD1 | ENST00000292180 | Frame-shift | ENSG00000278876 | ENST00000623802 | exon_skip_140339 | chr16:635611-635774 | -18.04 | -0.1262 | METTL26 | ENST00000301686 | Frame-shift | ENSG00000278876 | ENST00000623802 | exon_skip_382458 | chr3:38131595-38131638 | -7.23 | -0.1854 | ACAA1 | ENST00000333167 | Frame-shift |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | ENSG00000278876 | ENST00000623802 | CNIH1 | ENSG00000100528 | ENST00000395573 | -0.2756 | 1 | - | CHOL | ENSG00000278876 | ENST00000623802 | CNIH1 | ENSG00000100528 | ENST00000553660 | -0.2756 | 1 | - | CHOL | ENSG00000278876 | ENST00000623802 | CNIH1 | ENSG00000100528 | ENST00000557690 | -0.2756 | 1 | - | CHOL | ENSG00000278876 | ENST00000623802 | VPS4B | ENSG00000119541 | ENST00000591519 | -0.5871 | 170 | - | COAD,READ | ENSG00000278876 | ENST00000623802 | SEC62 | ENSG00000008952 | ENST00000487736 | -0.1059 | 1 | - | CHOL | ENSG00000278876 | ENST00000623802 | SEC23A | ENSG00000100934 | ENST00000557280 | -0.3686 | 46 | - | CHOL,BLCA,CESC,UCEC,PRAD | ENSG00000278876 | ENST00000623802 | SEC23A | ENSG00000100934 | ENST00000553970 | -0.3686 | 46 | - | CHOL,BLCA,CESC,UCEC,PRAD | ENSG00000278876 | ENST00000623802 | ACADM | ENSG00000117054 | ENST00000420607 | -0.2342 | 311 | - | CHOL,KIRP,COAD,LIHC,READ | ENSG00000278876 | ENST00000623802 | ACADM | ENSG00000117054 | ENST00000528016 | -0.1309 | 1 | - | CHOL,KIRP,COAD,LIHC,READ | ENSG00000278876 | ENST00000623802 | BTD | ENSG00000169814 | ENST00000449107 | -0.1526 | 126 | - | CHOL,CESC,LUSC,COAD | ENSG00000278876 | ENST00000623802 | SMG6 | ENSG00000070366 | ENST00000536871 | -0.2051 | 85 | - | UCEC |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000278876.1 | ENST00000623802.1 | 130 | 389 | 0 |
|