lncRNA targets the enhancer region and positively regulates the gene expression. |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | TFIP11,COPB2,DHDDS,DLST,EIF4G2,HSPA8,CSNK1A1,ARSB,MYH9,RNF123,ETHE1,COPG1,FCF1,ILK,PLIN3,BECN1,ACTN4,CALU,RNF40,SCP2,CARM1,LRP10,IQGAP1,SZRD1,PKM,RALB,CYB5R3,NCOA4,SDF4,PANK4,SF3A1,PLEKHB2,TNFSF13,IKBKG,ATP6V0C,CANT1,TLN1,GLYR1,NAPA,OS9,PSMC1,CAP1,CLTC,EMC1,NOMO2,ALAS1 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | ENSG00000278383 | ENST00000611460 | exon_skip_470077 | chr7:102397619-102397698 | -9.14 | -0.1269 | PRKRIP1 | ENST00000397912,ENST00000496391 | Frame-shift |
-lncRNA and exonskipping events are negatively correlated. |
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LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000278383 | ENST00000611460 | exon_skip_41813 | chr10:68337857-68337996 | -13.55 | -0.1652 | HNRNPH3 | ENST00000265866 | Frame-shift | ENSG00000278383 | ENST00000611460 | exon_skip_319223 | chr19:43526200-43526349 | -17.16 | -0.1442 | ETHE1 | ENST00000292147 | Frame-shift | ENSG00000278383 | ENST00000611460 | exon_skip_382458 | chr3:38131595-38131638 | -5.62 | -0.3306 | ACAA1 | ENST00000333167 | Frame-shift | ENSG00000278383 | ENST00000611460 | exon_skip_4796 | chr1:41007448-41007545 | -11.12 | -0.1737 | CTPS1 | ENST00000372616,ENST00000372621 | Frame-shift | ENSG00000278383 | ENST00000611460 | exon_skip_53559 | chr10:101793912-101793998 | -8.71 | -0.1161 | OGA | ENST00000361464 | Frame-shift | ENSG00000278383 | ENST00000611460 | exon_skip_358821 | chr20:63943652-63943669 | -4.48 | -0.3733 | UCKL1 | ENST00000354216 | Frame-shift | ENSG00000278383 | ENST00000611460 | exon_skip_377198 | chr3:123130479-123130616 | -15.16 | -0.1213 | PDIA5 | ENST00000316218 | Frame-shift | ENSG00000278383 | ENST00000611460 | exon_skip_380242 | chr3:186784961-186785101 | -16.54 | -0.1622 | EIF4A2 | ENST00000323963 | Frame-shift | ENSG00000278383 | ENST00000611460 | exon_skip_442657 | chr5:74730259-74730398 | -13.07 | -0.1257 | GFM2 | ENST00000296805,ENST00000509430 | Frame-shift | ENSG00000278383 | ENST00000611460 | exon_skip_445390 | chr5:150403120-150403312 | -18.93 | -0.1040 | CD74 | ENST00000009530 | In-frame | ENSG00000278383 | ENST00000611460 | exon_skip_470226 | chr7:103307595-103307708 | -13.13 | -0.1354 | PMPCB | ENST00000249269 | Frame-shift |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type | ENSG00000278383 | ENSG00000004534 | RBM6 | exon_skip_41813 | ENSG00000096746:chr10:68337857-68337996 | HNRNPH3 | ENST00000265866 | Frame-shift | STAD,UVM,THYM,PCPG,THCA | ENSG00000278383 | ENSG00000004534 | RBM6 | exon_skip_382458 | ENSG00000060971:chr3:38131595-38131638 | ACAA1 | ENST00000333167 | Frame-shift | STAD,UVM,READ,PCPG,THCA |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | ENSG00000278383 | ENST00000611460 | ALAS1 | ENSG00000023330 | ENST00000493402 | -0.2349 | 197 | - | CHOL,LIHC | ENSG00000278383 | ENST00000611460 | SCP2 | ENSG00000116171 | ENST00000430330 | -0.1033 | 363 | - | CHOL,COAD,LIHC,READ | ENSG00000278383 | ENST00000611460 | ETHE1 | ENSG00000105755 | ENST00000292147 | -0.1148 | 297 | - | COAD,READ | ENSG00000278383 | ENST00000611460 | ETHE1 | ENSG00000105755 | ENST00000600651 | -0.1275 | 169 | - | COAD,READ |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000278383.1 | ENST00000611460.1 | 58 | 307 | 480 |
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