lncRNA targets the enhancer region and positively regulates the gene expression. |
Only predicted by TDF | ZNF30,ILF3,GLI4,PBX2,RBM39,JMJD6,CIRBP,TIGD5,MZF1,MYSM1,NRF1,ZXDC,SUGP2,DMTF1,ZNF70,CENPB,RBM28,ZNF74,STAT2,TET3,ZFP14,RNPC3,TFE3,SAFB2,THOC1,MNT,TFAP4,ZBED5,CENPT,TTC14,ZGLP1,ZBED3,RC3H1,ZNF44,SRSF4,AGO2,RBM4B,CPSF1,PURB,MYEF2,MBD1,IKZF4,RARA,CPSF4,CPSF7,CXXC1,ZNF34,MOV10,DDX17,SRRM2,E2F6,PRR12,MECP2,PHF1,FOXJ3,ZC3H8,DEAF1,RBM41,HSF4,MEX3A,ZFP62,MEX3D,SGSM2,WIZ,SCMH1,RBM45,TIGD1,AGO3,PCBP4,MBD6,ZGPAT,FIZ1,ZMAT1,ZNF83,NXF1,ZNF8,ZNF18,HNF1B,NR2C2,PCGF2,SIX5,TEAD2,STAT6,DDX11,SOX12,ARNT,RBM6,HMGN3,RFX1,NOL3,RBM5,SRCAP,DOT1L,ZNF84,DDX42,RXRB,TRA2A,AHDC1,ZNF69,HINFP,NR2C1,ZFP3,SFPQ,RBM33 | Exist in public source | NA |
lncRNA targets the promoter region and positively regulates the gene expression. |
Only predicted by TDF | DOT1L,SRSF4,ZGLP1,DDX17,HSF4,MZF1,MLXIP,GLI4,NOL3,AGO2,RBM5,CXXC1,ZMAT1,RBM33,FOXO4,RBMS2,JMJD6,TFAP4,RARA,ZNF69,CPSF7,FOXK1,MEX3A,ILF3,RBM6,WIZ,PBX2,ZFP3,ZNF70,AGO4,RBM39,PCGF2,FOXJ2,FOXK2,BPTF,CIRBP,MEX3D | Exist in public source | NA |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
 |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000277476 | ENST00000622750 | exon_skip_470226 | chr7:103307595-103307708 | -14.98 | -0.1400 | PMPCB | ENST00000249269 | Frame-shift | ENSG00000277476 | ENST00000622750 | exon_skip_382458 | chr3:38131595-38131638 | -11.33 | -0.3062 | ACAA1 | ENST00000333167 | Frame-shift | ENSG00000277476 | ENST00000622750 | exon_skip_9446 | chr1:147270931-147271005 | -12.43 | -0.1883 | CHD1L | ENST00000369258 | Frame-shift | ENSG00000277476 | ENST00000622750 | exon_skip_38175 | chr1:234398381-234398553 | -18.58 | -0.1408 | TARBP1 | ENST00000040877 | Frame-shift | ENSG00000277476 | ENST00000622750 | exon_skip_111863 | chr14:23565815-23565892 | -22.72 | -0.3725 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | ENSG00000277476 | ENST00000622750 | exon_skip_114365 | chr14:74290026-74290118 | -21.42 | -0.3060 | ABCD4 | ENST00000356924 | Frame-shift | ENSG00000277476 | ENST00000622750 | exon_skip_139422 | chr16:89114338-89114487 | -28.27 | -0.2209 | ACSF3 | ENST00000317447,ENST00000406948 | Frame-shift | ENSG00000277476 | ENST00000622750 | exon_skip_290158 | chr17:42953723-42953778 | -11.98 | -0.2662 | AARSD1 | ENST00000427569 | Frame-shift | ENSG00000277476 | ENST00000622750 | exon_skip_302168 | chr19:10680345-10680443 | -14.17 | -0.1749 | ILF3 | ENST00000590261 | Frame-shift | ENSG00000277476 | ENST00000622750 | exon_skip_327748 | chr2:95410863-95411026 | -31.88 | -0.2070 | FAHD2A | ENST00000233379,ENST00000447036 | Frame-shift | ENSG00000277476 | ENST00000622750 | exon_skip_370518 | chr22:50247691-50247776 | -23.46 | -0.2861 | HDAC10 | ENST00000216271 | Frame-shift | ENSG00000277476 | ENST00000622750 | exon_skip_380242 | chr3:186784961-186785101 | -19.89 | -0.2801 | EIF4A2 | ENST00000323963 | Frame-shift | ENSG00000277476 | ENST00000622750 | exon_skip_436035 | chr5:79656957-79657001 | -12.16 | -0.2764 | TENT2 | ENST00000296783,ENST00000428308,ENST00000453514 | Frame-shift | ENSG00000277476 | ENST00000622750 | exon_skip_442657 | chr5:74730259-74730398 | -16.37 | -0.1289 | GFM2 | ENST00000296805,ENST00000509430 | Frame-shift | ENSG00000277476 | ENST00000622750 | exon_skip_446770 | chr5:178215275-178215430 | -28.26 | -0.2019 | PHYKPL | ENST00000308158 | Frame-shift | ENSG00000277476 | ENST00000622750 | exon_skip_462144 | chr6:125298713-125298816 | -17.14 | -0.1785 | HDDC2 | ENST00000398153 | Frame-shift | ENSG00000277476 | ENST00000622750 | exon_skip_462160 | chr6:127316449-127316502 | -10.61 | -0.4613 | ECHDC1 | ENST00000531967 | Frame-shift | ENSG00000277476 | ENST00000622750 | exon_skip_511212 | chrX:71555189-71555385 | -26.97 | -0.1586 | OGT | ENST00000373719 | Frame-shift |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types | ENSG00000277476 | ENSG00000141258 | SGSM2 | ENSG00000104885 | DOT1L | 8 | CHOL,GBM,KIRC,KIRP,LIHC,PAAD,PRAD,THCA | ENSG00000277476 | ENSG00000141258 | SGSM2 | ENSG00000116350 | SRSF4 | 5 | KIRC,KIRP,LUAD,LUSC,THCA | ENSG00000277476 | ENSG00000141258 | SGSM2 | ENSG00000100201 | DDX17 | 7 | CESC,CHOL,KIRC,KIRP,LIHC,PAAD,PRAD | ENSG00000277476 | ENSG00000141258 | SGSM2 | ENSG00000102878 | HSF4 | 10 | BLCA,CESC,CHOL,KIRC,KIRP,LAML,LUSC,PAAD,PRAD,THCA | ENSG00000277476 | ENSG00000102878 | HSF4 | ENSG00000099326 | MZF1 | 11 | BLCA,BRCA,CESC,CHOL,KIRC,KIRP,LIHC,LUSC,PAAD,PRAD,THCA | ENSG00000277476 | ENSG00000141258 | SGSM2 | ENSG00000099326 | MZF1 | 15 | BLCA,CESC,CHOL,GBM,KIRC,KIRP,LAML,LGG,LIHC,LUAD,LUSC,PAAD,PRAD,TGCT,THCA | ENSG00000277476 | ENSG00000236287 | ZBED5 | ENSG00000099326 | MZF1 | 6 | BLCA,CHOL,KIRC,KIRP,LIHC,SKCM | ENSG00000277476 | ENSG00000102878 | HSF4 | ENSG00000250571 | GLI4 | 10 | BLCA,BRCA,CHOL,KIRC,KIRP,LIHC,LUSC,PAAD,PRAD,THCA | ENSG00000277476 | ENSG00000141258 | SGSM2 | ENSG00000250571 | GLI4 | 12 | ACC,BLCA,CHOL,GBM,KIRC,KIRP,LGG,LIHC,LUAD,LUSC,PRAD,THCA | ENSG00000277476 | ENSG00000102878 | HSF4 | ENSG00000140939 | NOL3 | 6 | BRCA,CHOL,KIRC,KIRP,PAAD,THCA | ENSG00000277476 | ENSG00000102878 | HSF4 | ENSG00000003756 | RBM5 | 7 | BLCA,KIRC,KIRP,LUSC,PAAD,PRAD,THCA | ENSG00000277476 | ENSG00000141258 | SGSM2 | ENSG00000003756 | RBM5 | 13 | BLCA,CESC,CHOL,GBM,KIRC,KIRP,LAML,LGG,LIHC,LUSC,PAAD,PRAD,THCA | ENSG00000277476 | ENSG00000236287 | ZBED5 | ENSG00000003756 | RBM5 | 6 | BLCA,CHOL,KIRC,KIRP,LIHC,SKCM | ENSG00000277476 | ENSG00000102878 | HSF4 | ENSG00000154832 | CXXC1 | 9 | CHOL,KIRC,KIRP,LAML,LIHC,LUSC,PAAD,PRAD,THCA | ENSG00000277476 | ENSG00000141258 | SGSM2 | ENSG00000154832 | CXXC1 | 11 | BLCA,CHOL,GBM,KIRC,KIRP,LAML,LIHC,LUSC,PAAD,PRAD,THCA | ENSG00000277476 | ENSG00000141258 | SGSM2 | ENSG00000166432 | ZMAT1 | 7 | CHOL,GBM,KIRC,KIRP,PAAD,PRAD,THCA | ENSG00000277476 | ENSG00000102878 | HSF4 | ENSG00000184863 | RBM33 | 6 | CHOL,KIRC,KIRP,LIHC,LUSC,PAAD | ENSG00000277476 | ENSG00000141258 | SGSM2 | ENSG00000184863 | RBM33 | 12 | BLCA,CESC,CHOL,GBM,KIRC,KIRP,LGG,LIHC,LUAD,LUSC,PAAD,THCA | ENSG00000277476 | ENSG00000236287 | ZBED5 | ENSG00000184863 | RBM33 | 7 | BLCA,CHOL,ESCA,KIRC,KIRP,LIHC,SKCM | ENSG00000277476 | ENSG00000141258 | SGSM2 | ENSG00000149532 | CPSF7 | 6 | ACC,CHOL,GBM,KIRC,KIRP,LIHC | ENSG00000277476 | ENSG00000236287 | ZBED5 | ENSG00000149532 | CPSF7 | 5 | ACC,CHOL,KIRC,KIRP,LIHC | ENSG00000277476 | ENSG00000141258 | SGSM2 | ENSG00000129351 | ILF3 | 11 | ACC,BLCA,CHOL,GBM,KIRC,KIRP,LAML,LIHC,PAAD,PRAD,THCA | ENSG00000277476 | ENSG00000236287 | ZBED5 | ENSG00000129351 | ILF3 | 5 | BLCA,CHOL,KIRC,KIRP,LIHC | ENSG00000277476 | ENSG00000102878 | HSF4 | ENSG00000004534 | RBM6 | 9 | BLCA,CHOL,KIRC,KIRP,LIHC,LUSC,PAAD,PRAD,THCA | ENSG00000277476 | ENSG00000141258 | SGSM2 | ENSG00000004534 | RBM6 | 14 | ACC,BLCA,CESC,CHOL,GBM,KIRC,KIRP,LGG,LIHC,LUAD,LUSC,PAAD,PRAD,THCA | ENSG00000277476 | ENSG00000236287 | ZBED5 | ENSG00000004534 | RBM6 | 7 | ACC,BLCA,CHOL,KIRC,KIRP,LIHC,SKCM | ENSG00000277476 | ENSG00000141258 | SGSM2 | ENSG00000134698 | AGO4 | 6 | BLCA,CESC,CHOL,GBM,KIRC,KIRP | ENSG00000277476 | ENSG00000102878 | HSF4 | ENSG00000131051 | RBM39 | 9 | BLCA,CESC,CHOL,KIRC,KIRP,LUSC,PAAD,PRAD,THCA | ENSG00000277476 | ENSG00000141258 | SGSM2 | ENSG00000131051 | RBM39 | 11 | BLCA,CESC,CHOL,GBM,KIRC,KIRP,LIHC,LUSC,PAAD,PRAD,THCA | ENSG00000277476 | ENSG00000236287 | ZBED5 | ENSG00000131051 | RBM39 | 6 | BLCA,CHOL,KIRC,KIRP,LIHC,SKCM | ENSG00000277476 | ENSG00000141258 | SGSM2 | ENSG00000099622 | CIRBP | 6 | CHOL,KIRP,PAAD,PRAD,TGCT,THCA |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000277476.1 | ENST00000622750.1 | 63 | 205 | 14 |
|