lncRNA targets the enhancer region and positively regulates the gene expression. |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | UBR5,SMAD1,ZFP1,NFAT5,C1D,AGFG1,QKI,REST,CEBPZ,CDC5L,LARP4,ZBED6,ASCC1,NAF1,UHMK1,ASH1L,TEP1,MEX3C,DDX24,SP100,BACH1,ZNF28,FOXN3,PPARA,NOP9,FOXJ3,G3BP1,NCBP1,SMAD4,ARNT,STAT3,RBM41,SF3A1,KLF7,DDX6,ZNF17,ADNP2,KAT7,RFX5,MYNN,NCOA2,AHR,ATF2,ATF1,PURB,DDX60,ADAT1,CPSF2,CSTF2,GLYR1,MTF1,PUM1,NR2C2,KRR1,SYNJ1,RBM7,KLF13 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
|
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000276529 | ENST00000616815 | exon_skip_140339 | chr16:635611-635774 | -30.50 | -0.2652 | METTL26 | ENST00000301686 | Frame-shift | ENSG00000276529 | ENST00000616815 | exon_skip_326741 | chr2:73946718-73946906 | -17.86 | -0.1452 | DGUOK | ENST00000264093 | Frame-shift | ENSG00000276529 | ENST00000616815 | exon_skip_478534 | chr7:101244006-101244139 | -17.59 | -0.1691 | FIS1 | ENST00000223136 | Frame-shift | ENSG00000276529 | ENST00000616815 | exon_skip_145647 | chr16:69121052-69121170 | -15.05 | -0.1750 | CHTF8 | ENST00000398235,ENST00000448552 | Frame-shift | ENSG00000276529 | ENST00000616815 | exon_skip_445390 | chr5:150403120-150403312 | -24.25 | -0.1418 | CD74 | ENST00000009530 | In-frame | ENSG00000276529 | ENST00000616815 | exon_skip_29583 | chr1:114780109-114780215 | -14.37 | -0.1529 | SIKE1 | ENST00000060969 | Frame-shift | ENSG00000276529 | ENST00000616815 | exon_skip_30682 | chr1:151310210-151310255 | -10.07 | -0.3147 | PI4KB | ENST00000368873 | In-frame | ENSG00000276529 | ENST00000616815 | exon_skip_92074 | chr12:50142052-50142110 | -5.88 | -0.1508 | CERS5 | ENST00000317551 | Frame-shift | ENSG00000276529 | ENST00000616815 | exon_skip_128970 | chr15:72249244-72249314 | -12.51 | -0.1867 | PARP6 | ENST00000287196,ENST00000569795 | Frame-shift | ENSG00000276529 | ENST00000616815 | exon_skip_319223 | chr19:43526200-43526349 | -22.55 | -0.2301 | ETHE1 | ENST00000292147 | Frame-shift | ENSG00000276529 | ENST00000616815 | exon_skip_324294 | chr2:27774423-27774530 | -11.10 | -0.1168 | MRPL33 | ENST00000296102 | Frame-shift | ENSG00000276529 | ENST00000616815 | exon_skip_353131 | chr20:58669290-58669453 | -33.00 | -0.2260 | STX16 | ENST00000371141 | Frame-shift | ENSG00000276529 | ENST00000616815 | exon_skip_361081 | chr21:46291333-46291462 | -9.06 | -0.2384 | YBEY | ENST00000329319,ENST00000397691,ENST00000397701 | In-frame | ENSG00000276529 | ENST00000616815 | exon_skip_371367 | chr3:9697710-9697866 | -16.99 | -0.1222 | MTMR14 | ENST00000296003 | In-frame | ENSG00000276529 | ENST00000616815 | exon_skip_377198 | chr3:123130479-123130616 | -21.95 | -0.1925 | PDIA5 | ENST00000316218 | Frame-shift | ENSG00000276529 | ENST00000616815 | exon_skip_382458 | chr3:38131595-38131638 | -9.28 | -0.2442 | ACAA1 | ENST00000333167 | Frame-shift | ENSG00000276529 | ENST00000616815 | exon_skip_428703 | chr4:16170652-16170729 | -9.06 | -0.1192 | TAPT1 | ENST00000405303 | Frame-shift | ENSG00000276529 | ENST00000616815 | exon_skip_430434 | chr4:82356536-82356683 | -14.87 | -0.1144 | HNRNPD | ENST00000313899 | In-frame | ENSG00000276529 | ENST00000616815 | exon_skip_436035 | chr5:79656957-79657001 | -9.00 | -0.2368 | TENT2 | ENST00000296783,ENST00000428308,ENST00000453514 | Frame-shift | ENSG00000276529 | ENST00000616815 | exon_skip_470226 | chr7:103307595-103307708 | -14.14 | -0.1334 | PMPCB | ENST00000249269 | Frame-shift | ENSG00000276529 | ENST00000616815 | exon_skip_476549 | chr7:76013741-76013887 | -19.34 | -0.1547 | STYXL1 | ENST00000248600,ENST00000359697,ENST00000431581 | Frame-shift | ENSG00000276529 | ENST00000616815 | exon_skip_5818 | chr1:45568484-45568684 | -24.89 | -0.1368 | AKR1A1 | ENST00000351829,ENST00000372070 | Frame-shift | ENSG00000276529 | ENST00000616815 | exon_skip_52891 | chr10:98429790-98429889 | -17.51 | -0.2432 | HPS1 | ENST00000325103,ENST00000361490 | In-frame | ENSG00000276529 | ENST00000616815 | exon_skip_78771 | chr11:134248808-134248959 | -15.60 | -0.1083 | THYN1 | ENST00000341541,ENST00000392594,ENST00000392595 | Frame-shift | ENSG00000276529 | ENST00000616815 | exon_skip_153767 | chr17:48057031-48057121 | -16.10 | -0.2118 | NFE2L1 | ENST00000362042 | In-frame | ENSG00000276529 | ENST00000616815 | exon_skip_390418 | chr3:183842297-183842447 | -13.87 | -0.1101 | PARL | ENST00000317096 | In-frame | ENSG00000276529 | ENST00000616815 | exon_skip_322579 | chr19:55455635-55455845 | -26.53 | -0.1320 | ISOC2 | ENST00000425675 | In-frame |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | ENSG00000276529 | hsa-mir-22 | ENST00000616815 | chr21:44979053-44979137 | 167.00 | -77.16 | 65 | NA | ENSG00000276529 | hsa-mir-22 | ENST00000616815 | chr21:44978883-44978969 | 161.00 | -83.98 | 84 | NA | ENSG00000276529 | hsa-mir-22 | ENST00000616815 | chr21:44979113-44979197 | 153.00 | -77.94 | 67 | NA |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types | ENSG00000276529 | AP001505.10,hsa-mir-22,NRM | CHOL,MESO,THYM,KIRP,LIHC | ENSG00000276529 | AP001505.10,hsa-mir-22,RBM8A | CHOL,MESO,THYM,KIRP,LIHC | ENSG00000276529 | AP001505.10,hsa-mir-22,TONSL | CHOL,MESO,THYM,KIRP,LIHC | ENSG00000276529 | AP001505.10,hsa-mir-22,SAMD1 | CHOL,MESO,THYM,KIRP,LIHC | ENSG00000276529 | AP001505.10,hsa-mir-22,PRCC | CHOL,MESO,THYM,KIRP,LIHC | ENSG00000276529 | AP001505.10,hsa-mir-22,RBM10 | CHOL,MESO,THYM,KIRP,LIHC | ENSG00000276529 | AP001505.10,hsa-mir-22,NCAPH2 | CHOL,MESO,THYM,KIRP,LIHC | ENSG00000276529 | AP001505.10,hsa-mir-22,EHMT2 | CHOL,MESO,THYM,KIRP,LIHC | ENSG00000276529 | AP001505.10,hsa-mir-22,ISY1 | CHOL,MESO,THYM,KIRP,LIHC | ENSG00000276529 | AP001505.10,hsa-mir-22,CEP131 | CHOL,MESO,THYM,KIRP,LIHC | ENSG00000276529 | AP001505.10,hsa-mir-22,MCM7 | CHOL,MESO,THYM,KIRP,LIHC | ENSG00000276529 | AP001505.10,hsa-mir-22,ANP32A | CHOL,MESO,THYM,KIRP,LIHC | ENSG00000276529 | AP001505.10,hsa-mir-22,STMN1 | CHOL,MESO,THYM,KIRP,LIHC | ENSG00000276529 | AP001505.10,hsa-mir-22,TSEN54 | CHOL,MESO,THYM,KIRP,LIHC | ENSG00000276529 | AP001505.10,hsa-mir-22,RFC2 | CHOL,MESO,THYM,KIRP,LIHC | ENSG00000276529 | AP001505.10,hsa-mir-22,KIF22 | CHOL,MESO,THYM,KIRP,LIHC | ENSG00000276529 | AP001505.10,hsa-mir-22,FBXO46 | CHOL,MESO,THYM,KIRP,LIHC | ENSG00000276529 | AP001505.10,hsa-mir-22,CHTF18 | CHOL,MESO,THYM,KIRP,LIHC | ENSG00000276529 | AP001505.10,hsa-mir-22,HNRNPUL2 | CHOL,MESO,THYM,KIRP,LIHC | ENSG00000276529 | AP001505.10,hsa-mir-22,USF1 | CHOL,MESO,THYM,KIRP,LIHC | ENSG00000276529 | AP001505.10,hsa-mir-22,SYMPK | CHOL,MESO,THYM,KIRP,LIHC | ENSG00000276529 | AP001505.10,hsa-mir-22,CHTOP | CHOL,MESO,THYM,KIRP,LIHC | ENSG00000276529 | AP001505.10,hsa-mir-22,NASP | CHOL,MESO,THYM,KIRP,LIHC | ENSG00000276529 | AP001505.10,hsa-mir-22,TFAP4 | CHOL,MESO,THYM,KIRP,LIHC | ENSG00000276529 | AP001505.10,hsa-mir-22,BCL2L12 | CHOL,MESO,THYM,KIRP,LIHC | ENSG00000276529 | AP001505.10,hsa-mir-22,FANCG | CHOL,MESO,THYM,KIRP,LIHC | ENSG00000276529 | AP001505.10,hsa-mir-22,TEDC2 | CHOL,MESO,THYM,KIRP,LIHC | ENSG00000276529 | AP001505.10,hsa-mir-22,BUD13 | CHOL,MESO,THYM,KIRP,LIHC | ENSG00000276529 | AP001505.10,hsa-mir-22,SSBP4 | CHOL,MESO,THYM,KIRP,LIHC | ENSG00000276529 | AP001505.10,hsa-mir-22,PRR3 | CHOL,MESO,THYM,KIRP,LIHC | ENSG00000276529 | AP001505.10,hsa-mir-22,TMEM39B | CHOL,MESO,THYM,KIRP,LIHC | ENSG00000276529 | AP001505.10,hsa-mir-22,MCM5 | CHOL,MESO,THYM,KIRP,LIHC | ENSG00000276529 | AP001505.10,hsa-mir-22,CCAR2 | CHOL,MESO,THYM,KIRP,LIHC | ENSG00000276529 | AP001505.10,hsa-mir-22,HDGFL2 | CHOL,MESO,THYM,KIRP,LIHC | ENSG00000276529 | AP001505.10,hsa-mir-22,POLD1 | CHOL,MESO,THYM,KIRP,LIHC | ENSG00000276529 | AP001505.10,hsa-mir-22,CCHCR1 | CHOL,MESO,THYM,KIRP,LIHC |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000276529.1 | ENST00000616815.1 | 61 | 268 | 453 |
|