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lncRNA: ENSG00000276075

Summary for CTD-2012K14.8

Gene summary

Gene information	Ensembl ID	ENSG00000276075
	Gene symbol	CTD-2012K14.8
	Gene name
	HGNC
	Entrez ID
	Gene type	antisense
	Synonyms
	UniProtAcc

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Structure and expression level for CTD-2012K14.8

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000276075	1.557360e+02	-2.530277e+00	5.875809e-01	-4.306261e+00	1.660000e-05	8.610000e-05	DOWN	CHOL
ENSG00000276075	4.570647e+02	1.287017e+00	2.580852e-01	4.986793e+00	6.140000e-07	2.440000e-06	UP	KICH
ENSG00000276075	1.970871e+02	2.588909e+00	5.093962e-01	5.082309e+00	3.730000e-07	1.470000e-05	UP	PCPG

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000276075	-3.754557e-01	1.103796e-02	CHOL	1.285724e-02
ENSG00000276075	3.071784e-01	3.410488e-03	KICH	4.288383e-03

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lncRNA-Protein interaction for CTD-2012K14.8

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

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lncRNA-DNA interaction for CTD-2012K14.8

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for CTD-2012K14.8

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

NEK4,KPNB1,QKI,APPL2,ARID1A,CEP170,OXSR1,SENP7,RNF4,KLHL28,AIDA,NT5C2,NAF1,MAP4K3,QRICH1,WWC3,FAM104A,QTRT2,SNX6,UBR1,ACTR3,PPP1R12A,PCDHGC3,PSEN1,CHD8,LARP1,TSR1,ACTN1,MCM3AP,BZW1,HECTD1,FCHO2,PBRM1,KCTD3,ANKFY1,PKN2,FAT1,TASOR,FNDC3A,SRP72,VPS13B,RAD21,SEC24B,ATP2A2,WASF2,ZDHHC20,SON,CTNNB1,LIMA1,ATP11B,SH3GLB1,KTN1,PTPN12,PAK2,APAF1,CDYL,STRN,SLFN5,PCNX1,ZNF45,VIRMA,PHF20,KIDINS220,IQGAP1,G3BP1,CDC27,GIGYF2,IREB2,SEPTIN11,SMARCC1,SLMAP,FBXO11,SEC23A,STK24,CCNI,TWF1,BRD2,SNAP23,BCLAF1,DDX3X,CLCC1,PAG1,BCL2L2,ASXL2,MFSD14A,MAPK1,RSF1,UBR5,SMAD1,TM9SF1,MFAP3,BAZ2A,SETD5,SF3B1,PIKFYVE,NIPA2,ARSB,SCARB2,TPM4,HSPG2,PDLIM5,MED12,CRK,VEZT,POC1B,RASA1,MED13,RAP1B,TRA2B,SENP6,TMEM131,SMG6,SF3A1,MED13L,MYO10,KLHL5,EPS15,NUP98,AZI2,UBE3A,ATP11A,DCP1A,ACTR2,DCAF7,NCOA3,GPATCH8,ABL2,GTF2A1,TFIP11,TNPO1,PRKAA1,KIF2A,NUP58,GTF2I,SOS1,PLS1,SMAD5,EIF3L,MED1,HBP1,KPNA1,IPO9,EIF4G2,SOS2,PPFIBP1,CSNK1A1,PPP4R1,ZEB1,NIN,HEATR5B,TTC37,BIRC6,RANBP2,SEC31A,CTNNA1,CYFIP1,ZZEF1,BCL10,LSM12,FNBP1L,TAF2,LPP,DENND5A,SMIM15,BDP1,FYTTD1,F2R,MED23,THOC2,CPSF2,ATF1,FNDC3B,SMARCAD1,MPRIP,NEMF,AFAP1,DHX36,NCOR1,BAZ1A,SDAD1,SLC39A6,TAF5L

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for CTD-2012K14.8

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000276075	ENST00000613438	PLS1	ENSG00000120756	ENST00000497002	-0.1908	41	-	KICH
ENSG00000276075	ENST00000621378	PLS1	ENSG00000120756	ENST00000497002	-0.2159	354	-	KICH
ENSG00000276075	ENST00000613438	SLFN5	ENSG00000166750	ENST00000592325	-0.1554	235	CHOL	-
ENSG00000276075	ENST00000613438	TPM4	ENSG00000167460	ENST00000592822	-0.2090	1	CHOL	KICH
ENSG00000276075	ENST00000613438	AFAP1	ENSG00000196526	ENST00000382543	-0.1354	27	CHOL	KICH
ENSG00000276075	ENST00000613438	AFAP1	ENSG00000196526	ENST00000614385	-0.1348	318	CHOL	KICH
ENSG00000276075	ENST00000613438	PCDHGC3	ENSG00000240184	ENST00000611950	-0.1525	22	-	KICH
ENSG00000276075	ENST00000613438	PCDHGC3	ENSG00000240184	ENST00000617222	-0.2685	299	-	KICH
ENSG00000276075	ENST00000621378	SLFN5	ENSG00000166750	ENST00000592325	-0.1916	75	CHOL	-
ENSG00000276075	ENST00000621378	TPM4	ENSG00000167460	ENST00000592822	-0.2033	123	CHOL	KICH
ENSG00000276075	ENST00000621378	AFAP1	ENSG00000196526	ENST00000382543	-0.1224	353	CHOL	KICH
ENSG00000276075	ENST00000621378	AFAP1	ENSG00000196526	ENST00000614385	-0.1348	644	CHOL	KICH
ENSG00000276075	ENST00000621378	PCDHGC3	ENSG00000240184	ENST00000611950	-0.1937	135	-	KICH
ENSG00000276075	ENST00000621378	PCDHGC3	ENSG00000240184	ENST00000617222	-0.5967	308	-	KICH
ENSG00000276075	ENST00000613438	FNDC3B	ENSG00000075420	ENST00000416957	-1.6050	346	-	PCPG
ENSG00000276075	ENST00000613438	PCNX1	ENSG00000100731	ENST00000554691	-0.1007	1	-	PCPG
ENSG00000276075	ENST00000613438	PCNX1	ENSG00000100731	ENST00000555780	-0.1287	334	-	PCPG
ENSG00000276075	ENST00000621378	FNDC3B	ENSG00000075420	ENST00000423424	-0.2139	1	-	PCPG
ENSG00000276075	ENST00000621378	FNDC3B	ENSG00000075420	ENST00000416957	-1.6050	238	-	PCPG
ENSG00000276075	ENST00000621378	PCNX1	ENSG00000100731	ENST00000439984	-0.1269	159	-	PCPG
ENSG00000276075	ENST00000621378	PCNX1	ENSG00000100731	ENST00000555780	-0.1756	25	-	PCPG
ENSG00000276075	ENST00000613438	ACTN1	ENSG00000072110	ENST00000394419	-0.1901	1	-	KICH
ENSG00000276075	ENST00000613438	ACTN1	ENSG00000072110	ENST00000438964	-0.1901	1	-	KICH
ENSG00000276075	ENST00000613438	ACTN1	ENSG00000072110	ENST00000376839	-0.2339	2	-	KICH
ENSG00000276075	ENST00000613438	ACTN1	ENSG00000072110	ENST00000555075	-0.2348	38	-	KICH
ENSG00000276075	ENST00000613438	KCTD3	ENSG00000136636	ENST00000448333	-0.1380	282	-	PCPG
ENSG00000276075	ENST00000613438	KCTD3	ENSG00000136636	ENST00000452413	-0.1708	275	-	PCPG
ENSG00000276075	ENST00000613438	F2R	ENSG00000181104	ENST00000505600	-0.4417	235	-	KICH
ENSG00000276075	ENST00000621378	ACTN1	ENSG00000072110	ENST00000438964	-0.1396	264	-	KICH
ENSG00000276075	ENST00000621378	ACTN1	ENSG00000072110	ENST00000376839	-0.2485	71	-	KICH
ENSG00000276075	ENST00000621378	ACTN1	ENSG00000072110	ENST00000555075	-0.2348	364	-	KICH
ENSG00000276075	ENST00000621378	KCTD3	ENSG00000136636	ENST00000448333	-0.2782	164	-	PCPG
ENSG00000276075	ENST00000621378	KCTD3	ENSG00000136636	ENST00000452413	-0.1708	601	-	PCPG
ENSG00000276075	ENST00000621378	F2R	ENSG00000181104	ENST00000505600	-0.3775	356	-	KICH
ENSG00000276075	ENST00000613438	WWC3	ENSG00000047644	ENST00000454666	-0.1099	48	-	PCPG
ENSG00000276075	ENST00000613438	PKN2	ENSG00000065243	ENST00000370513	-0.1441	6	-	PCPG
ENSG00000276075	ENST00000613438	ATP11A	ENSG00000068650	ENST00000487903	-0.1004	1	CHOL	-
ENSG00000276075	ENST00000613438	ATP11A	ENSG00000068650	ENST00000375645	-0.1004	1	CHOL	-
ENSG00000276075	ENST00000613438	ATP11A	ENSG00000068650	ENST00000375630	-0.1004	1	CHOL	-
ENSG00000276075	ENST00000613438	ATP11A	ENSG00000068650	ENST00000471555	-0.1004	1	CHOL	-
ENSG00000276075	ENST00000613438	ATP11A	ENSG00000068650	ENST00000419631	-0.1004	1	CHOL	-
ENSG00000276075	ENST00000613438	ATP11A	ENSG00000068650	ENST00000415301	-0.1152	72	CHOL	-
ENSG00000276075	ENST00000613438	KIF2A	ENSG00000068796	ENST00000401507	-0.1175	15	CHOL	-
ENSG00000276075	ENST00000613438	KIF2A	ENSG00000068796	ENST00000407818	-0.2034	15	CHOL	-
ENSG00000276075	ENST00000613438	KIF2A	ENSG00000068796	ENST00000506857	-0.1201	1	CHOL	-
ENSG00000276075	ENST00000621378	WWC3	ENSG00000047644	ENST00000454666	-0.1099	374	-	PCPG
ENSG00000276075	ENST00000621378	PKN2	ENSG00000065243	ENST00000370513	-0.1607	190	-	PCPG
ENSG00000276075	ENST00000621378	PKN2	ENSG00000065243	ENST00000449189	-0.1146	197	-	PCPG
ENSG00000276075	ENST00000621378	ATP11A	ENSG00000068650	ENST00000418678	-0.1072	9	CHOL	-
ENSG00000276075	ENST00000621378	ATP11A	ENSG00000068650	ENST00000415301	-0.1152	398	CHOL	-
ENSG00000276075	ENST00000621378	KIF2A	ENSG00000068796	ENST00000401507	-0.1449	341	CHOL	-
ENSG00000276075	ENST00000621378	KIF2A	ENSG00000068796	ENST00000407818	-0.3165	341	CHOL	-
ENSG00000276075	ENST00000613438	BZW1	ENSG00000082153	ENST00000452790	-0.1874	32	-	PCPG
ENSG00000276075	ENST00000613438	FAT1	ENSG00000083857	ENST00000512772	-0.1084	10	CHOL	KICH
ENSG00000276075	ENST00000613438	EPS15	ENSG00000085832	ENST00000465467	-0.1026	74	-	PCPG
ENSG00000276075	ENST00000613438	SNAP23	ENSG00000092531	ENST00000568451	-0.1231	170	-	PCPG
ENSG00000276075	ENST00000613438	SNAP23	ENSG00000092531	ENST00000568331	-0.1133	349	-	PCPG
ENSG00000276075	ENST00000613438	PPFIBP1	ENSG00000110841	ENST00000535047	-0.1399	1	-	KICH
ENSG00000276075	ENST00000613438	ARSB	ENSG00000113273	ENST00000565165	-0.2607	72	-	KICH
ENSG00000276075	ENST00000621378	BZW1	ENSG00000082153	ENST00000452790	-0.2326	143	-	PCPG
ENSG00000276075	ENST00000621378	FAT1	ENSG00000083857	ENST00000512772	-0.1220	3	CHOL	KICH
ENSG00000276075	ENST00000621378	EPS15	ENSG00000085832	ENST00000465467	-0.1261	1	-	PCPG
ENSG00000276075	ENST00000621378	SNAP23	ENSG00000092531	ENST00000568451	-0.1231	496	-	PCPG
ENSG00000276075	ENST00000621378	SNAP23	ENSG00000092531	ENST00000564153	-0.1045	158	-	PCPG
ENSG00000276075	ENST00000621378	SNAP23	ENSG00000092531	ENST00000568331	-0.1032	248	-	PCPG
ENSG00000276075	ENST00000621378	SNAP23	ENSG00000092531	ENST00000568841	-0.1001	266	-	PCPG
ENSG00000276075	ENST00000621378	PPFIBP1	ENSG00000110841	ENST00000535047	-0.1430	250	-	KICH
ENSG00000276075	ENST00000621378	PPFIBP1	ENSG00000110841	ENST00000539326	-0.1081	120	-	KICH
ENSG00000276075	ENST00000621378	ARSB	ENSG00000113273	ENST00000565165	-0.2607	398	-	KICH
ENSG00000276075	ENST00000613438	ACTR3	ENSG00000115091	ENST00000535589	-0.1226	79	-	PCPG
ENSG00000276075	ENST00000613438	FNBP1L	ENSG00000137942	ENST00000424449	-0.1247	75	CHOL	-
ENSG00000276075	ENST00000621378	ACTR3	ENSG00000115091	ENST00000535589	-0.1226	405	-	PCPG
ENSG00000276075	ENST00000621378	FNBP1L	ENSG00000137942	ENST00000424449	-0.1247	401	CHOL	-
ENSG00000276075	ENST00000613438	IQGAP1	ENSG00000140575	ENST00000560738	-0.1262	1	CHOL	-
ENSG00000276075	ENST00000613438	IQGAP1	ENSG00000140575	ENST00000560373	-1.6400	159	CHOL	-
ENSG00000276075	ENST00000613438	SLC39A6	ENSG00000141424	ENST00000440549	-0.1571	18	CHOL	-
ENSG00000276075	ENST00000613438	HSPG2	ENSG00000142798	ENST00000374695	-0.1002	1	CHOL	-
ENSG00000276075	ENST00000613438	HSPG2	ENSG00000142798	ENST00000374676	-0.2373	280	CHOL	-
ENSG00000276075	ENST00000613438	HSPG2	ENSG00000142798	ENST00000412328	-0.2105	256	CHOL	-
ENSG00000276075	ENST00000613438	HSPG2	ENSG00000142798	ENST00000439717	-0.1956	303	CHOL	-
ENSG00000276075	ENST00000613438	BCL10	ENSG00000142867	ENST00000620248	-0.1707	137	-	PCPG
ENSG00000276075	ENST00000613438	ABL2	ENSG00000143322	ENST00000512653	-0.1299	163	CHOL	-
ENSG00000276075	ENST00000613438	LPP	ENSG00000145012	ENST00000415906	-0.1080	78	-	PCPG
ENSG00000276075	ENST00000613438	SLMAP	ENSG00000163681	ENST00000416658	-0.1148	1	-	PCPG
ENSG00000276075	ENST00000613438	SLMAP	ENSG00000163681	ENST00000495364	-0.2607	31	-	PCPG
ENSG00000276075	ENST00000613438	SLMAP	ENSG00000163681	ENST00000494088	-0.1148	10	-	PCPG
ENSG00000276075	ENST00000621378	IQGAP1	ENSG00000140575	ENST00000560738	-0.1089	1	CHOL	-
ENSG00000276075	ENST00000621378	IQGAP1	ENSG00000140575	ENST00000560373	-1.6400	485	CHOL	-
ENSG00000276075	ENST00000621378	SLC39A6	ENSG00000141424	ENST00000440549	-0.1527	182	CHOL	-
ENSG00000276075	ENST00000621378	HSPG2	ENSG00000142798	ENST00000374676	-0.1515	162	CHOL	-
ENSG00000276075	ENST00000621378	HSPG2	ENSG00000142798	ENST00000412328	-0.2105	582	CHOL	-
ENSG00000276075	ENST00000621378	HSPG2	ENSG00000142798	ENST00000439717	-0.2395	28	CHOL	-
ENSG00000276075	ENST00000621378	BCL10	ENSG00000142867	ENST00000620248	-0.1707	463	-	PCPG
ENSG00000276075	ENST00000621378	ABL2	ENSG00000143322	ENST00000512653	-0.1299	489	CHOL	-
ENSG00000276075	ENST00000621378	ABL2	ENSG00000143322	ENST00000392043	-0.1076	224	CHOL	-
ENSG00000276075	ENST00000621378	LPP	ENSG00000145012	ENST00000415906	-0.1080	404	-	PCPG
ENSG00000276075	ENST00000621378	SLMAP	ENSG00000163681	ENST00000495364	-0.2607	357	-	PCPG
ENSG00000276075	ENST00000621378	SLMAP	ENSG00000163681	ENST00000494088	-0.1227	336	-	PCPG

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000276075.1	ENST00000613438.1	112	23	361
ENSG00000276075.1	ENST00000621378.1	97	157	450

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential