lncRNA targets the enhancer region and positively regulates the gene expression. |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | NFAT5,DHX8,SON,AGFG1,ASCC1,BBX,FOXJ2,UHMK1,DDX24,MECP2,PPARA,IREB2,SF3A1,BPTF,GLMP,NCOA2,GLYR1,MTF1,SYNJ1 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
 |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000275632 | ENST00000619201 | exon_skip_91507 | chr12:47795905-47796016 | -14.78 | -0.1971 | HDAC7 | ENST00000427332 | In-frame | ENSG00000275632 | ENST00000619201 | exon_skip_140339 | chr16:635611-635774 | -18.26 | -0.1171 | METTL26 | ENST00000301686 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_5818 | chr1:45568484-45568684 | -15.35 | -0.1137 | AKR1A1 | ENST00000351829,ENST00000372070 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_83512 | chr12:53505134-53505262 | -13.75 | -0.1196 | TARBP2 | ENST00000266987 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_145647 | chr16:69121052-69121170 | -13.45 | -0.1245 | CHTF8 | ENST00000398235,ENST00000448552 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_301267 | chr19:6746028-6746196 | -15.61 | -0.1406 | TRIP10 | ENST00000313244 | In-frame | ENSG00000275632 | ENST00000619201 | exon_skip_309204 | chr19:49181348-49181461 | -12.53 | -0.2666 | TRPM4 | ENST00000252826 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_353131 | chr20:58669290-58669453 | -18.60 | -0.1329 | STX16 | ENST00000371141 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_365794 | chr22:40401592-40401675 | -14.09 | -0.2472 | SGSM3 | ENST00000248929 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_380242 | chr3:186784961-186785101 | -12.95 | -0.1177 | EIF4A2 | ENST00000323963 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_382458 | chr3:38131595-38131638 | -8.32 | -0.2521 | ACAA1 | ENST00000333167 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_436501 | chr5:96730779-96730860 | -10.16 | -0.2162 | CAST | ENST00000341926,ENST00000395813 | In-frame | ENSG00000275632 | ENST00000619201 | exon_skip_445390 | chr5:150403120-150403312 | -16.28 | -0.1005 | CD74 | ENST00000009530 | In-frame | ENSG00000275632 | ENST00000619201 | exon_skip_446770 | chr5:178215275-178215430 | -15.35 | -0.1290 | PHYKPL | ENST00000308158 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_478176 | chr7:100435630-100435767 | -12.91 | -0.1058 | PPP1R35 | ENST00000292330 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_4796 | chr1:41007448-41007545 | -9.73 | -0.1390 | CTPS1 | ENST00000372616,ENST00000372621 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_11029 | chr1:154989559-154989707 | -17.60 | -0.1709 | FLAD1 | ENST00000292180 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_16568 | chr1:201989382-201989531 | -13.23 | -0.1131 | RNPEP | ENST00000295640 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_29583 | chr1:114780109-114780215 | -9.25 | -0.1745 | SIKE1 | ENST00000060969 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_41813 | chr10:68337857-68337996 | -11.33 | -0.1218 | HNRNPH3 | ENST00000265866 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_52701 | chr10:97468965-97469104 | -14.90 | -0.1120 | MMS19 | ENST00000370782,ENST00000438925 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_52891 | chr10:98429790-98429889 | -12.02 | -0.1582 | HPS1 | ENST00000325103,ENST00000361490 | In-frame | ENSG00000275632 | ENST00000619201 | exon_skip_53559 | chr10:101793912-101793998 | -10.76 | -0.1993 | OGA | ENST00000361464 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_66800 | chr11:130123611-130123779 | -15.77 | -0.1325 | APLP2 | ENST00000263574 | In-frame | ENSG00000275632 | ENST00000619201 | exon_skip_74009 | chr11:64773429-64773505 | -10.99 | -0.2680 | SF1 | ENST00000377390 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_87733 | chr12:120571190-120571291 | -11.61 | -0.1319 | RNF10 | ENST00000325954 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_92074 | chr12:50142052-50142110 | -5.46 | -0.3033 | CERS5 | ENST00000317551 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_95407 | chr12:95040475-95040597 | -10.13 | -0.1055 | NR2C1 | ENST00000333003 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_96024 | chr12:109090008-109090207 | -15.51 | -0.1477 | ALKBH2 | ENST00000343075,ENST00000429722 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_114365 | chr14:74290026-74290118 | -11.22 | -0.1675 | ABCD4 | ENST00000356924 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_283774 | chr17:78171509-78171649 | -17.39 | -0.1338 | SYNGR2 | ENST00000225777,ENST00000585591 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_290158 | chr17:42953723-42953778 | -6.16 | -0.8800 | AARSD1 | ENST00000427569 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_324294 | chr2:27774423-27774530 | -8.57 | -0.1058 | MRPL33 | ENST00000296102 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_335558 | chr2:240596680-240596942 | -23.04 | -0.1280 | CAPN10 | ENST00000391984 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_358821 | chr20:63943652-63943669 | -5.43 | -0.4525 | UCKL1 | ENST00000354216 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_363747 | chr22:23877720-23877869 | -16.86 | -0.1240 | SLC2A11 | ENST00000345044 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_370518 | chr22:50247691-50247776 | -11.31 | -0.1885 | HDAC10 | ENST00000216271 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_371367 | chr3:9697710-9697866 | -14.35 | -0.1281 | MTMR14 | ENST00000296003 | In-frame | ENSG00000275632 | ENST00000619201 | exon_skip_390412 | chr3:183833723-183833825 | -10.39 | -0.1506 | PARL | ENST00000317096 | In-frame | ENSG00000275632 | ENST00000619201 | exon_skip_430434 | chr4:82356536-82356683 | -16.11 | -0.1259 | HNRNPD | ENST00000313899 | In-frame | ENSG00000275632 | ENST00000619201 | exon_skip_436035 | chr5:79656957-79657001 | -6.99 | -0.1997 | TENT2 | ENST00000296783,ENST00000428308,ENST00000453514 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_438188 | chr5:141638954-141639021 | -10.62 | -0.2004 | RELL2 | ENST00000297164,ENST00000444782 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_442657 | chr5:74730259-74730398 | -11.61 | -0.1027 | GFM2 | ENST00000296805,ENST00000509430 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_470226 | chr7:103307595-103307708 | -13.13 | -0.1563 | PMPCB | ENST00000249269 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_476535 | chr7:76000889-76001002 | -12.91 | -0.1403 | STYXL1 | ENST00000248600,ENST00000359697,ENST00000431581 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_484062 | chr8:73030335-73030395 | -8.27 | -0.1622 | TERF1 | ENST00000276603 | In-frame | ENSG00000275632 | ENST00000619201 | exon_skip_511212 | chrX:71555189-71555385 | -17.65 | -0.1044 | OGT | ENST00000373719 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_374581 | chr3:50110378-50110463 | -14.16 | -0.1967 | RBM5 | ENST00000347869 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_353954 | chr20:63875815-63875875 | -7.90 | -0.4158 | TPD52L2 | ENST00000346249 | In-frame | ENSG00000275632 | ENST00000619201 | exon_skip_356468 | chr20:35280653-35280829 | -17.64 | -0.1184 | EIF6 | ENST00000374436,ENST00000374450 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_61261 | chr11:65713347-65713503 | -19.03 | -0.1442 | KAT5 | ENST00000377046 | In-frame | ENSG00000275632 | ENST00000619201 | exon_skip_75223 | chr11:72012400-72012442 | -7.01 | -0.2417 | NUMA1 | ENST00000393695 | In-frame | ENSG00000275632 | ENST00000619201 | exon_skip_79971 | chr12:7202240-7202351 | -12.89 | -0.1591 | PEX5 | ENST00000420616,ENST00000455147 | In-frame | ENSG00000275632 | ENST00000619201 | exon_skip_153767 | chr17:48057031-48057121 | -13.29 | -0.1749 | NFE2L1 | ENST00000362042 | In-frame | ENSG00000275632 | ENST00000619201 | exon_skip_303345 | chr19:17227839-17228005 | -19.39 | -0.1204 | OCEL1 | ENST00000215061 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_494079 | chr8:144099080-144099205 | -15.74 | -0.1513 | SHARPIN | ENST00000398712 | Frame-shift | ENSG00000275632 | ENST00000619201 | exon_skip_334374 | chr2:227347225-227347384 | -13.62 | -0.1602 | MFF | ENST00000353339 | In-frame |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | ENSG00000275632 | hsa-mir-22 | ENST00000619201 | chr20:6000504-6000595 | 175.00 | -83.95 | 81 | NA | ENSG00000275632 | hsa-mir-22 | ENST00000619201 | chr20:6000684-6000767 | 156.00 | -59.96 | 67 | NA | ENSG00000275632 | hsa-mir-22 | ENST00000619201 | chr20:6000820-6000905 | 149.00 | -65.13 | 78 | NA |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,PPIH | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,CENPH | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,NRM | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,C1orf35 | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,TADA2A | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,RBM8A | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,TONSL | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,ILKAP | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,PRCC | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,RCE1 | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,NCAPH2 | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,SRSF3 | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,EHMT2 | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,ISY1 | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,EXOSC2 | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,TRABD | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,B3GALT6 | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,POLR2H | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,KDM1A | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,SAP30BP | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,CEP131 | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,C1orf159 | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,RAD9A | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,MCM7 | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,ANP32A | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,MRPL53 | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,NOC2L | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,PTMA | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,ARFIP2 | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,NOP58 | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,STMN1 | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,BANF1 | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,SF3A3 | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,UTP6 | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,FBXO46 | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,SNRPA | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,INTS11 | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,CHTF18 | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,HNRNPUL2 | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,CHTOP | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,RBM14 | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,NASP | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,BCL2L12 | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,UBXN11 | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,IRF3 | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,TEDC2 | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,BUD13 | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,ATAD3B | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,PRR3 | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,NUP85 | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,NT5C | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,C11orf49 | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,SRRT | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,TAF1D | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,TMEM39B | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,MCM5 | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,CCAR2 | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,NELFE | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,POLD1 | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,SKA2 | CHOL,ACC,THYM,KIRP,LIHC | ENSG00000275632 | RP5-967N21.11,hsa-mir-22,CCHCR1 | CHOL,ACC,THYM,KIRP,LIHC |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000275632.1 | ENST00000619201.1 | 73 | 219 | 1 |
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