lncRNA targets the enhancer region and positively regulates the gene expression. |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | RBMS3,UBR5,SMAD1,ZFP1,NFAT5,SON,BAZ2A,QKI,REST,SYNJ1,HBP1,BBX,CPEB4,ELF1,ZFR,FOXN3,NOP9,G3BP1,IREB2,MEF2D,XRN1,MBNL2,ARNT,PRDM2,DDX6,THAP5,ZBTB4,NCOA2,ATF1,FOXK1,PBX1,NFIC,GLYR1,DDX3X,PUM1,ZHX1,NR2C2,ZMAT3,PPARA,AQR,KLF13 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | ENSG00000274213 | ENST00000619432 | exon_skip_48713 | chr10:34336198-34336243 | -9.02 | -0.2653 | PARD3 | ENST00000374789 | In-frame |
-lncRNA and exonskipping events are negatively correlated. |
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LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000274213 | ENST00000619432 | exon_skip_110809 | chr14:105449358-105449409 | -11.43 | -0.2381 | MTA1 | ENST00000331320 | In-frame | ENSG00000274213 | ENST00000619432 | exon_skip_140339 | chr16:635611-635774 | -26.24 | -0.1693 | METTL26 | ENST00000301686 | Frame-shift | ENSG00000274213 | ENST00000619432 | exon_skip_287874 | chr17:29085603-29085648 | -5.56 | -0.2224 | MYO18A | ENST00000527372 | In-frame | ENSG00000274213 | ENST00000619432 | exon_skip_356108 | chr20:34740362-34743341 | -34.33 | -0.1137 | NCOA6 | ENST00000359003,ENST00000374796 | In-frame | ENSG00000274213 | ENST00000619432 | exon_skip_358606 | chr20:63202286-63203807 | -39.52 | -0.1142 | YTHDF1 | ENST00000370339 | In-frame | ENSG00000274213 | ENST00000619432 | exon_skip_390412 | chr3:183833723-183833825 | -15.13 | -0.1845 | PARL | ENST00000317096 | In-frame | ENSG00000274213 | ENST00000619432 | exon_skip_460899 | chr6:85538837-85538864 | -7.58 | -0.3790 | SNX14 | ENST00000314673 | In-frame | ENSG00000274213 | ENST00000619432 | exon_skip_484062 | chr8:73030335-73030395 | -11.15 | -0.2144 | TERF1 | ENST00000276603 | In-frame | ENSG00000274213 | ENST00000619432 | exon_skip_514339 | chrX:23713134-23713208 | -9.20 | -0.1878 | ACOT9 | ENST00000336430 | Frame-shift | ENSG00000274213 | ENST00000619432 | exon_skip_1717 | chr1:15721328-15721388 | -8.91 | -0.1856 | PLEKHM2 | ENST00000375799 | In-frame | ENSG00000274213 | ENST00000619432 | exon_skip_5818 | chr1:45568484-45568684 | -18.35 | -0.1079 | AKR1A1 | ENST00000351829,ENST00000372070 | Frame-shift | ENSG00000274213 | ENST00000619432 | exon_skip_43507 | chr10:84499874-84499959 | -16.27 | -0.2199 | CCSER2 | ENST00000224756 | Frame-shift | ENSG00000274213 | ENST00000619432 | exon_skip_90104 | chr12:10709907-10710114 | -29.58 | -0.1590 | YBX3 | ENST00000228251 | In-frame | ENSG00000274213 | ENST00000619432 | exon_skip_374552 | chr3:50104247-50104308 | -8.05 | -0.1578 | RBM5 | ENST00000347869 | Frame-shift | ENSG00000274213 | ENST00000619432 | exon_skip_380242 | chr3:186784961-186785101 | -16.38 | -0.1820 | EIF4A2 | ENST00000323963 | Frame-shift | ENSG00000274213 | ENST00000619432 | exon_skip_445390 | chr5:150403120-150403312 | -29.85 | -0.1640 | CD74 | ENST00000009530 | In-frame | ENSG00000274213 | ENST00000619432 | exon_skip_451515 | chr6:41080810-41080897 | -13.67 | -0.2680 | NFYA | ENST00000341376 | In-frame | ENSG00000274213 | ENST00000619432 | exon_skip_92074 | chr12:50142052-50142110 | -5.65 | -0.1284 | CERS5 | ENST00000317551 | Frame-shift | ENSG00000274213 | ENST00000619432 | exon_skip_95407 | chr12:95040475-95040597 | -12.63 | -0.1579 | NR2C1 | ENST00000333003 | Frame-shift | ENSG00000274213 | ENST00000619432 | exon_skip_137312 | chr16:66563121-66563217 | -11.16 | -0.2657 | CKLF | ENST00000264001 | In-frame | ENSG00000274213 | ENST00000619432 | exon_skip_358821 | chr20:63943652-63943669 | -5.04 | -0.6300 | UCKL1 | ENST00000354216 | Frame-shift | ENSG00000274213 | ENST00000619432 | exon_skip_442657 | chr5:74730259-74730398 | -12.02 | -0.1382 | GFM2 | ENST00000296805,ENST00000509430 | Frame-shift | ENSG00000274213 | ENST00000619432 | exon_skip_466113 | chr7:48099669-48099787 | -11.91 | -0.1054 | UPP1 | ENST00000331803,ENST00000395564 | Frame-shift | ENSG00000274213 | ENST00000619432 | exon_skip_466137 | chr7:48103296-48103411 | -15.41 | -0.1388 | UPP1 | ENST00000331803,ENST00000395564 | Frame-shift | ENSG00000274213 | ENST00000619432 | exon_skip_470226 | chr7:103307595-103307708 | -11.21 | -0.1218 | PMPCB | ENST00000249269 | Frame-shift | ENSG00000274213 | ENST00000619432 | exon_skip_390418 | chr3:183842297-183842447 | -13.23 | -0.1150 | PARL | ENST00000317096 | In-frame | ENSG00000274213 | ENST00000619432 | exon_skip_424741 | chr4:83458345-83458429 | -5.25 | -0.1810 | MRPS18C | ENST00000295491 | In-frame | ENSG00000274213 | ENST00000619432 | exon_skip_24749 | chr1:33021366-33021461 | -8.63 | -0.1040 | AK2 | ENST00000354858 | Frame-shift | ENSG00000274213 | ENST00000619432 | exon_skip_494079 | chr8:144099080-144099205 | -28.58 | -0.2802 | SHARPIN | ENST00000398712 | Frame-shift | ENSG00000274213 | ENST00000619432 | exon_skip_489166 | chr8:38169801-38169917 | -9.97 | -0.1084 | LSM1 | ENST00000311351 | Frame-shift |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000274213.1 | ENST00000619432.1 | 169 | 30 | 536 |
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