lncRNA targets the enhancer region and positively regulates the gene expression. |
Only predicted by TDF | DDX11,CHTOP,RBM19,TFAP4,GPBP1,LSM5,ZNF22,RBM6,ZBED5,HMGN3,THYN1,ILF3,RBM48,ZC3H8,GLI4,RBM39,EDC3,CENPT,TTC14,HSF4,THOC6,XPO1,RBM5,SRRM2,IRF3,CIRBP,LCORL,SUGP1,DDX56,LSM2,ZFP62,ZNF44,MZF1,ZNF43,MYSM1,SGSM2,NRF1,AKAP8,DOT1L,ZNF84,SUGP2,RBMX,RBM4B,DMTF1,PSPC1,CSTF3,RXRB,TIGD1,RBM26,RBM45,RNPS1,RBM14,TRA2A,DDX51,E2F4,ZBTB3,MBD4,HES6,MYEF2,PCBP4,CWC15,ZNF69,DHX34,SRSF2,SRSF7,HINFP,MBD6,ZGPAT,FIZ1,NR2C1,DDX55,TFDP2,ZFP3,CPSF7,ZMAT1,ZNF83,SFPQ,THAP9,ZFP14,USF1,CXXC1,RNPC3,ZNF3,ZFP69,SNRPA,NXF1,SAFB2,ZNF8,THOC1,RBM33,DDX17,NKRF,E2F5,EIF2D,ZNF10 | Exist in public source | NA |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
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LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000273723 | ENST00000620372 | exon_skip_43507 | chr10:84499874-84499959 | -11.98 | -0.1736 | CCSER2 | ENST00000224756 | Frame-shift | ENSG00000273723 | ENST00000620372 | exon_skip_309204 | chr19:49181348-49181461 | -18.55 | -0.1671 | TRPM4 | ENST00000252826 | Frame-shift | ENSG00000273723 | ENST00000620372 | exon_skip_319223 | chr19:43526200-43526349 | -16.68 | -0.1150 | ETHE1 | ENST00000292147 | Frame-shift | ENSG00000273723 | ENST00000620372 | exon_skip_353131 | chr20:58669290-58669453 | -23.59 | -0.1583 | STX16 | ENST00000371141 | Frame-shift | ENSG00000273723 | ENST00000620372 | exon_skip_377198 | chr3:123130479-123130616 | -17.18 | -0.1311 | PDIA5 | ENST00000316218 | Frame-shift | ENSG00000273723 | ENST00000620372 | exon_skip_382458 | chr3:38131595-38131638 | -7.07 | -0.1724 | ACAA1 | ENST00000333167 | Frame-shift | ENSG00000273723 | ENST00000620372 | exon_skip_66482 | chr11:126274926-126275021 | -13.02 | -0.2411 | FOXRED1 | ENST00000263578 | Frame-shift | ENSG00000273723 | ENST00000620372 | exon_skip_95407 | chr12:95040475-95040597 | -13.21 | -0.1573 | NR2C1 | ENST00000333003 | Frame-shift | ENSG00000273723 | ENST00000620372 | exon_skip_290158 | chr17:42953723-42953778 | -8.25 | -0.3173 | AARSD1 | ENST00000427569 | Frame-shift | ENSG00000273723 | ENST00000620372 | exon_skip_333962 | chr2:219247112-219247246 | -14.64 | -0.1408 | STK16 | ENST00000396738,ENST00000409638 | Frame-shift | ENSG00000273723 | ENST00000620372 | exon_skip_370518 | chr22:50247691-50247776 | -12.82 | -0.1732 | HDAC10 | ENST00000216271 | Frame-shift | ENSG00000273723 | ENST00000620372 | exon_skip_442657 | chr5:74730259-74730398 | -10.18 | -0.1184 | GFM2 | ENST00000296805,ENST00000509430 | Frame-shift | ENSG00000273723 | ENST00000620372 | exon_skip_470226 | chr7:103307595-103307708 | -12.99 | -0.1249 | PMPCB | ENST00000249269 | Frame-shift |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type | ENSG00000273723 | ENSG00000139746 | RBM26 | exon_skip_382458 | ENSG00000060971:chr3:38131595-38131638 | ACAA1 | ENST00000333167 | Frame-shift | STAD,READ,OV,THYM,PAAD | ENSG00000273723 | ENSG00000124193 | SRSF6 | exon_skip_382458 | ENSG00000060971:chr3:38131595-38131638 | ACAA1 | ENST00000333167 | Frame-shift | STAD,READ,UCS,THYM,PAAD |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000273723.1 | ENST00000620372.1 | 64 | 6 | 200 |
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